Wall clock time and date at job start Tue Mar 31 2020 15:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.52255 * 2 1 4 4 C 1.53037 * 109.49358 * 120.08235 * 2 1 3 5 5 C 1.53047 * 109.53819 * 181.31779 * 4 2 1 6 6 C 1.53191 * 109.30707 * 298.63585 * 5 4 2 7 7 N 1.46922 * 108.77995 * 54.63554 * 6 5 4 8 8 C 1.34777 * 120.63751 * 126.36547 * 7 6 5 9 9 O 1.21279 * 120.00658 * 183.36548 * 8 7 6 10 10 C 1.50703 * 119.99286 * 3.36401 * 8 7 6 11 11 C 1.53009 * 109.46949 * 179.97438 * 10 8 7 12 12 F 1.39901 * 109.46563 * 59.99865 * 11 10 8 13 13 F 1.39899 * 109.47086 * 179.97438 * 11 10 8 14 14 F 1.39895 * 109.47045 * 300.00460 * 11 10 8 15 15 C 1.46926 * 118.73619 * 306.39052 * 7 6 5 16 16 H 1.09006 * 109.58424 * 293.67471 * 15 7 6 17 17 C 1.53001 * 109.58929 * 173.39750 * 15 7 6 18 18 C 1.53002 * 109.46864 * 291.78143 * 17 15 7 19 19 N 1.46496 * 109.47160 * 173.65868 * 18 17 15 20 20 C 1.36938 * 120.00050 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00134 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00184 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99835 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00072 * 179.72562 * 22 20 19 25 25 H 1.48505 * 109.47284 * 180.27636 * 24 22 20 26 26 H 1.48498 * 109.47246 * 300.27168 * 24 22 20 27 27 H 1.48491 * 109.47203 * 60.27807 * 24 22 20 28 28 H 1.09001 * 109.47034 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47206 * 300.08276 * 1 2 3 30 30 H 1.09003 * 109.47306 * 60.07803 * 1 2 3 31 31 H 1.08998 * 109.46484 * 61.29838 * 4 2 1 32 32 H 1.09007 * 109.45006 * 301.32709 * 4 2 1 33 33 H 1.08991 * 109.49756 * 178.68313 * 5 4 2 34 34 H 1.09001 * 109.52346 * 58.59689 * 5 4 2 35 35 H 1.08996 * 109.58898 * 294.84037 * 6 5 4 36 36 H 1.09002 * 109.58503 * 174.41776 * 6 5 4 37 37 H 1.08996 * 109.47428 * 299.99415 * 10 8 7 38 38 H 1.09001 * 109.47344 * 60.00167 * 10 8 7 39 39 H 1.08994 * 109.47518 * 171.77882 * 17 15 7 40 40 H 1.09000 * 109.47132 * 51.77345 * 17 15 7 41 41 H 1.08996 * 109.47247 * 53.65740 * 18 17 15 42 42 H 1.09005 * 109.46771 * 293.65374 * 18 17 15 43 43 H 0.96998 * 120.00312 * 359.97438 * 19 18 17 44 44 H 0.97002 * 120.00064 * 359.72856 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7231 1.2483 5 6 3.5708 -0.6951 1.2661 6 6 4.1052 -1.4267 0.0308 7 7 3.5046 -0.8291 -1.1695 8 6 4.2811 -0.3856 -2.1779 9 8 3.7773 0.1610 -3.1361 10 6 5.7757 -0.5687 -2.1145 11 6 6.4153 0.0182 -3.3745 12 9 6.1156 1.3822 -3.4575 13 9 7.8027 -0.1513 -3.3154 14 9 5.9122 -0.6392 -4.5023 15 6 2.0414 -0.7238 -1.2495 16 1 1.6054 -1.7215 -1.3006 17 6 1.6518 0.0705 -2.4978 18 6 2.0823 1.5290 -2.3292 19 7 1.8475 2.2552 -3.5797 20 6 2.1584 3.5859 -3.6674 21 1 2.5763 4.1002 -2.8146 22 6 1.9364 4.2739 -4.8524 23 7 1.4276 3.6470 -5.8919 24 14 2.3534 6.0909 -4.9697 25 1 2.0187 6.5890 -6.3281 26 1 1.5691 6.8450 -3.9590 27 1 3.8036 6.2834 -4.7154 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5151 0.8892 30 1 -0.3634 0.5126 -0.8907 31 1 1.6967 -1.7573 1.2353 32 1 1.6581 -0.2243 2.1388 33 1 3.9333 -1.1897 2.1671 34 1 3.9164 0.3386 1.2544 35 1 3.8375 -2.4818 0.0868 36 1 5.1895 -1.3246 -0.0137 37 1 6.1675 -0.0568 -1.2356 38 1 6.0091 -1.6315 -2.0502 39 1 0.5716 0.0241 -2.6356 40 1 2.1479 -0.3562 -3.3695 41 1 3.1426 1.5684 -2.0798 42 1 1.5032 1.9884 -1.5281 43 1 1.4718 1.7934 -4.3455 44 1 1.2114 2.7033 -5.8311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691718612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:29 Heat of formation + Delta-G solvation = -151.284683 kcal Electronic energy + Delta-G solvation = -30152.903381 eV Core-core repulsion = 25691.684762 eV Total energy + Delta-G solvation = -4461.218619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 12.07 seconds Orbital eigenvalues (eV) -49.88189 -47.45760 -47.23800 -40.94812 -37.78751 -35.45233 -33.93661 -32.91823 -31.70311 -30.68791 -28.23667 -26.53275 -25.28995 -23.75796 -23.14062 -22.22500 -21.35472 -20.29771 -19.08164 -18.32854 -18.24551 -17.28079 -17.03386 -16.67441 -15.83202 -15.70118 -14.86906 -14.84038 -14.38189 -14.29588 -14.04968 -13.93166 -13.76329 -13.63621 -13.47599 -13.45259 -13.41891 -13.39058 -13.09103 -12.77907 -12.63679 -12.39789 -12.00026 -11.89233 -11.66397 -11.43347 -11.06199 -10.91610 -10.77914 -10.49611 -10.46391 -10.24034 -10.10906 -9.82667 -9.02564 -8.82260 -8.65148 -8.36913 -6.64125 -5.85911 -2.80010 2.51313 2.59124 3.02028 3.62856 3.68596 3.78743 3.85170 3.98268 4.10638 4.44585 4.58510 4.64782 4.70098 4.82694 4.87414 4.94565 4.97766 5.07096 5.12720 5.29727 5.42035 5.50052 5.53819 5.59018 5.67565 5.77505 5.82132 5.92129 5.95402 6.06537 6.20976 6.27197 6.40062 6.45663 6.50843 6.66262 7.09831 7.21948 7.34675 8.02892 8.21857 9.01360 9.53910 10.40309 10.57903 11.63955 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.006049 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.414836 B = 4627.420851 C = 6768.704025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.107 3.893 7 N -0.607 5.607 8 C 0.496 3.504 9 O -0.456 6.456 10 C -0.195 4.195 11 C 0.469 3.531 12 F -0.162 7.162 13 F -0.190 7.190 14 F -0.173 7.173 15 C 0.163 3.837 16 H 0.069 0.931 17 C -0.136 4.136 18 C 0.181 3.819 19 N -0.733 5.733 20 C -0.314 4.314 21 H 0.057 0.943 22 C -0.052 4.052 23 N -0.950 5.950 24 Si 1.077 2.923 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.298 1.298 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.025 0.975 42 H -0.001 1.001 43 H 0.364 0.636 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 -16.033 17.033 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.104 0.896 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.016 4.016 7 N -0.342 5.342 8 C 0.281 3.719 9 O -0.328 6.328 10 C -0.236 4.236 11 C 0.415 3.585 12 F -0.143 7.143 13 F -0.171 7.171 14 F -0.155 7.155 15 C 0.061 3.939 16 H 0.087 0.913 17 C -0.173 4.173 18 C 0.054 3.946 19 N -0.377 5.377 20 C -0.446 4.446 21 H 0.075 0.925 22 C -0.248 4.248 23 N -0.597 5.597 24 Si 0.909 3.091 25 H -0.212 1.212 26 H -0.226 1.226 27 H -0.225 1.225 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.043 0.957 42 H 0.016 0.984 43 H 0.197 0.803 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.370 -14.251 15.637 22.403 hybrid contribution 0.199 -1.447 0.952 1.744 sum 7.569 -15.698 16.589 24.061 Atomic orbital electron populations 1.21785 0.94320 1.01524 1.02598 1.21667 0.96324 1.01038 0.93846 0.89603 1.21593 0.94759 1.00679 0.98111 1.21929 0.96724 1.01581 0.97237 1.21750 0.97970 0.97261 0.84668 1.47882 1.06819 1.61826 1.17699 1.19712 0.87244 0.80528 0.84405 1.91101 1.72157 1.37200 1.32353 1.23044 0.97029 1.05952 0.97594 1.19740 0.75667 0.77551 0.85574 1.93321 1.92651 1.31789 1.96586 1.93168 1.31868 1.95421 1.96663 1.93222 1.86971 1.80681 1.54596 1.21319 0.77749 0.98644 0.96222 0.91327 1.22448 0.99821 0.97792 0.97273 1.20671 0.96677 0.88297 0.88994 1.42198 1.77168 1.07970 1.10404 1.19980 1.38439 0.86698 0.99459 0.92490 1.25632 1.01018 1.06010 0.92176 1.70837 1.46902 1.11120 1.30858 0.83279 0.75456 0.74880 0.75480 1.21151 1.22587 1.22543 0.92959 0.92606 0.91539 0.91980 0.91680 0.90767 0.91215 0.91181 0.90085 0.85127 0.85187 0.92872 0.87968 0.95748 0.98351 0.80315 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.97 37.16 0.33 -1.30 16 2 C -0.11 -1.29 1.92 -90.50 -0.17 -1.46 16 3 H 0.09 1.25 6.14 -51.93 -0.32 0.93 16 4 C -0.11 -0.97 5.17 -26.69 -0.14 -1.10 16 5 C -0.14 -1.00 6.08 -26.61 -0.16 -1.16 16 6 C 0.11 0.78 6.34 -3.71 -0.02 0.76 16 7 N -0.61 -7.10 2.93 -165.23 -0.48 -7.59 16 8 C 0.50 7.15 6.37 -10.98 -0.07 7.08 16 9 O -0.46 -9.05 8.28 5.56 0.05 -9.01 16 10 C -0.20 -2.05 4.13 -27.88 -0.11 -2.17 16 11 C 0.47 6.86 2.89 37.16 0.11 6.97 16 12 F -0.16 -3.09 16.40 2.25 0.04 -3.06 16 13 F -0.19 -2.46 17.32 2.25 0.04 -2.42 16 14 F -0.17 -2.93 16.40 2.25 0.04 -2.89 16 15 C 0.16 2.12 2.67 -67.60 -0.18 1.94 16 16 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 17 C -0.14 -2.43 4.16 -26.73 -0.11 -2.54 16 18 C 0.18 4.04 4.23 -4.04 -0.02 4.02 16 19 N -0.73 -20.55 5.54 -59.91 -0.33 -20.88 16 20 C -0.31 -9.73 9.99 -15.06 -0.15 -9.88 16 21 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.05 -1.63 5.50 -17.43 -0.10 -1.72 16 23 N -0.95 -31.74 13.70 55.49 0.76 -30.98 16 24 Si 1.08 28.12 29.92 -169.99 -5.09 23.03 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.90 6.81 -51.93 -0.35 0.55 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.42 5.95 -51.93 -0.31 0.11 16 37 H 0.13 1.02 7.55 -51.93 -0.39 0.62 16 38 H 0.13 0.89 8.06 -51.93 -0.42 0.47 16 39 H 0.05 0.94 7.05 -51.93 -0.37 0.57 16 40 H 0.10 2.06 5.69 -53.32 -0.30 1.75 16 41 H 0.02 0.58 5.37 -51.93 -0.28 0.30 16 42 H 0.00 -0.02 6.61 -51.93 -0.34 -0.37 16 43 H 0.36 10.62 6.50 -40.82 -0.27 10.36 16 44 H 0.25 8.45 6.77 -40.82 -0.28 8.17 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -37.80 345.69 -6.78 -44.59 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.21 Total: 4.56 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.80 Total: -0.56 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.06 Total: -59.45 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.05 Total: -9.01 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 0.11 Total: -8.37 kcal Atomic # 14 Polarization: 28.12 SS G_CDS: -5.09 Total: 23.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.80 -6.78 -44.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691718612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.699 kcal (2) G-P(sol) polarization free energy of solvation -37.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.07 seconds