Wall clock time and date at job start Tue Mar 31 2020 16:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.52047 * 2 1 4 4 C 1.53043 * 109.49486 * 239.91461 * 2 1 3 5 5 C 1.53032 * 109.54306 * 301.41556 * 4 2 1 6 6 C 1.53197 * 109.31105 * 298.63620 * 5 4 2 7 7 N 1.46928 * 108.77801 * 54.63409 * 6 5 4 8 8 C 1.34777 * 120.63266 * 126.11523 * 7 6 5 9 9 O 1.21276 * 120.00056 * 174.40868 * 8 7 6 10 10 C 1.50699 * 119.99932 * 354.40886 * 8 7 6 11 11 C 1.52994 * 109.47228 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47302 * 180.02562 * 11 10 8 13 13 F 1.39902 * 109.46744 * 59.99915 * 12 11 10 14 14 F 1.39894 * 109.47232 * 179.97438 * 12 11 10 15 15 F 1.39894 * 109.46982 * 300.00260 * 12 11 10 16 16 C 1.46927 * 118.73687 * 306.39285 * 7 6 5 17 17 H 1.08994 * 109.58980 * 293.81978 * 16 7 6 18 18 C 1.53002 * 109.58676 * 173.39091 * 16 7 6 19 19 N 1.46500 * 109.47049 * 181.78151 * 18 16 7 20 20 C 1.36939 * 119.99590 * 184.95132 * 19 18 16 21 21 H 1.08001 * 120.00167 * 0.02562 * 20 19 18 22 22 C 1.38819 * 119.99767 * 179.97438 * 20 19 18 23 23 N 1.31614 * 119.99680 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99764 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.47288 * 89.99860 * 24 22 20 26 26 H 1.48500 * 109.46891 * 210.00037 * 24 22 20 27 27 H 1.48500 * 109.47184 * 329.99546 * 24 22 20 28 28 H 1.09004 * 109.47128 * 180.08581 * 1 2 3 29 29 H 1.08999 * 109.47412 * 300.07911 * 1 2 3 30 30 H 1.08998 * 109.47307 * 60.08597 * 1 2 3 31 31 H 1.09001 * 109.45475 * 181.39213 * 4 2 1 32 32 H 1.09001 * 109.45717 * 61.44185 * 4 2 1 33 33 H 1.08998 * 109.49897 * 178.68819 * 5 4 2 34 34 H 1.09000 * 109.52661 * 58.59784 * 5 4 2 35 35 H 1.09002 * 109.58676 * 294.84951 * 6 5 4 36 36 H 1.09004 * 109.58995 * 174.42285 * 6 5 4 37 37 H 1.08997 * 109.47410 * 300.00150 * 10 8 7 38 38 H 1.09001 * 109.47340 * 59.99793 * 10 8 7 39 39 H 1.09006 * 109.46874 * 300.00138 * 11 10 8 40 40 H 1.08994 * 109.47383 * 60.00283 * 11 10 8 41 41 H 1.08997 * 109.47364 * 301.78323 * 18 16 7 42 42 H 1.09002 * 109.46683 * 61.78107 * 18 16 7 43 43 H 0.97000 * 120.00144 * 4.95130 * 19 18 16 44 44 H 0.97003 * 119.99838 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 1.5030 -2.1558 -1.2660 6 6 2.0140 -2.9040 -0.0307 7 7 1.6515 -2.1382 1.1697 8 6 0.9696 -2.7204 2.1758 9 8 0.7645 -2.1090 3.2029 10 6 0.4618 -4.1312 2.0246 11 6 -0.2728 -4.5484 3.3001 12 6 -0.7878 -5.9810 3.1468 13 9 0.2916 -6.8435 2.9269 14 9 -1.4590 -6.3627 4.3134 15 9 -1.6662 -6.0469 2.0600 16 6 2.0413 -0.7238 1.2496 17 1 3.1274 -0.6462 1.2980 18 6 1.4228 -0.0911 2.4979 19 7 1.7780 1.3292 2.5525 20 6 1.4203 2.0830 3.6383 21 1 0.8767 1.6305 4.4545 22 6 1.7572 3.4287 3.6903 23 7 1.4139 4.1531 4.7341 24 14 2.6980 4.2111 2.2789 25 1 1.7379 4.7455 1.2801 26 1 3.5393 5.3189 2.7987 27 1 3.5647 3.1910 1.6360 28 1 -0.3633 -1.0277 0.0015 29 1 -0.3634 0.5150 0.8893 30 1 -0.3634 0.5125 -0.8907 31 1 3.1305 -0.7445 -1.2352 32 1 1.6988 -0.1959 -2.1389 33 1 1.8481 -2.6629 -2.1670 34 1 0.4132 -2.1361 -1.2543 35 1 3.0979 -3.0043 -0.0866 36 1 1.5554 -3.8919 0.0139 37 1 -0.2231 -4.1821 1.1782 38 1 1.3024 -4.8035 1.8525 39 1 0.4118 -4.4974 4.1468 40 1 -1.1135 -3.8762 3.4716 41 1 0.3384 -0.1932 2.4577 42 1 1.8025 -0.5951 3.3867 43 1 2.2665 1.7355 1.8196 44 1 1.6490 5.0935 4.7704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698939487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:08 Heat of formation + Delta-G solvation = -169.677497 kcal Electronic energy + Delta-G solvation = -29073.233353 eV Core-core repulsion = 24611.217161 eV Total energy + Delta-G solvation = -4462.016191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 19.05 seconds Orbital eigenvalues (eV) -50.34884 -47.83492 -47.83375 -40.79705 -37.96609 -35.20610 -33.90762 -33.40430 -32.12645 -30.48950 -28.23914 -26.68183 -26.11601 -24.34643 -23.14637 -22.45577 -21.10598 -20.13358 -18.82332 -18.78985 -18.28995 -17.89331 -17.37035 -16.49684 -16.16390 -15.60447 -15.06296 -14.95643 -14.70791 -14.47345 -14.31900 -14.25547 -14.17643 -13.98289 -13.97362 -13.77076 -13.56860 -13.48339 -12.93327 -12.71239 -12.54983 -12.36256 -12.03538 -11.96886 -11.72555 -11.63804 -11.47959 -11.15133 -11.01571 -10.88427 -10.68743 -10.42869 -10.25660 -10.16739 -9.49378 -8.98978 -8.80647 -8.47226 -7.07840 -5.66918 -3.00683 2.45094 2.60832 2.90365 3.40302 3.42097 3.48592 3.57106 3.74122 3.82597 4.38432 4.49775 4.63640 4.64820 4.66151 4.74262 4.83993 4.99294 5.03091 5.18238 5.24459 5.32927 5.37048 5.51718 5.59287 5.63718 5.68161 5.74625 5.75705 5.83474 5.90215 5.91190 6.15087 6.20328 6.25248 6.58128 6.58422 6.98202 7.18282 7.42389 8.09325 8.24679 8.52778 9.32419 10.04472 10.24564 11.52207 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.015536 B = 0.003666 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.834163 B = 7636.307853 C = 8942.272333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.107 3.893 7 N -0.603 5.603 8 C 0.512 3.488 9 O -0.510 6.510 10 C -0.146 4.146 11 C -0.152 4.152 12 C 0.453 3.547 13 F -0.186 7.186 14 F -0.183 7.183 15 F -0.185 7.185 16 C 0.140 3.860 17 H 0.071 0.929 18 C 0.162 3.838 19 N -0.760 5.760 20 C -0.230 4.230 21 H 0.090 0.910 22 C 0.000 4.000 23 N -0.938 5.938 24 Si 0.882 3.118 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.279 1.279 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.354 0.646 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 -22.243 -13.128 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.101 0.899 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.017 4.017 7 N -0.337 5.337 8 C 0.299 3.701 9 O -0.385 6.385 10 C -0.186 4.186 11 C -0.190 4.190 12 C 0.399 3.601 13 F -0.167 7.167 14 F -0.164 7.164 15 F -0.167 7.167 16 C 0.038 3.962 17 H 0.089 0.911 18 C 0.036 3.964 19 N -0.408 5.408 20 C -0.360 4.360 21 H 0.108 0.892 22 C -0.195 4.195 23 N -0.587 5.587 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.205 1.205 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.187 0.813 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.385 -21.907 -12.341 25.182 hybrid contribution 0.685 0.443 -1.203 1.454 sum -0.700 -21.464 -13.544 25.390 Atomic orbital electron populations 1.21857 0.94588 1.01272 1.02463 1.21481 0.97156 0.99756 0.93739 0.89897 1.21580 1.00395 0.95244 0.98169 1.21961 1.01867 0.96466 0.97223 1.21762 1.00471 0.94847 0.84576 1.48050 1.56168 1.11472 1.18036 1.20215 0.78473 0.87761 0.83611 1.90877 1.56264 1.63473 1.27915 1.21689 1.02112 0.96330 0.98512 1.22638 1.04885 0.89848 1.01658 1.20637 0.75566 0.90352 0.73584 1.93179 1.55391 1.73541 1.94611 1.93200 1.81315 1.92829 1.49058 1.93181 1.70537 1.97071 1.55878 1.21646 0.98876 0.78602 0.97120 0.91128 1.21340 0.97694 0.83717 0.93603 1.42940 1.69199 1.06330 1.22299 1.19062 1.29166 0.91069 0.96697 0.89183 1.24651 1.01194 0.96308 0.97318 1.69701 1.52250 1.07237 1.29498 0.86583 0.80148 0.79057 0.82974 1.21210 1.21853 1.20536 0.93143 0.90870 0.93341 0.91947 0.91712 0.90993 0.90938 0.91183 0.89869 0.87821 0.87910 0.86236 0.86176 0.94441 0.92015 0.81284 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.19 37.16 0.30 -1.74 16 2 C -0.10 -1.42 2.53 -90.50 -0.23 -1.65 16 3 H 0.08 1.31 6.89 -51.93 -0.36 0.96 16 4 C -0.12 -1.18 5.43 -26.69 -0.14 -1.32 16 5 C -0.14 -1.09 5.74 -26.61 -0.15 -1.24 16 6 C 0.11 0.86 6.35 -3.71 -0.02 0.83 16 7 N -0.60 -7.27 2.41 -165.21 -0.40 -7.67 16 8 C 0.51 6.55 7.53 -10.99 -0.08 6.47 16 9 O -0.51 -8.81 11.54 5.56 0.06 -8.75 16 10 C -0.15 -1.22 3.81 -27.89 -0.11 -1.33 16 11 C -0.15 -1.33 4.55 -26.73 -0.12 -1.45 16 12 C 0.45 3.99 3.16 37.16 0.12 4.11 16 13 F -0.19 -1.68 16.80 2.25 0.04 -1.64 16 14 F -0.18 -1.85 17.32 2.25 0.04 -1.81 16 15 F -0.19 -1.70 16.80 2.25 0.04 -1.66 16 16 C 0.14 2.17 2.81 -67.60 -0.19 1.98 16 17 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 18 C 0.16 3.35 3.60 -4.04 -0.01 3.33 16 19 N -0.76 -18.53 5.18 -59.91 -0.31 -18.84 16 20 C -0.23 -6.74 10.47 -15.06 -0.16 -6.90 16 21 H 0.09 2.88 8.06 -52.49 -0.42 2.46 16 22 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 23 N -0.94 -30.25 13.97 55.49 0.78 -29.47 16 24 Si 0.88 22.43 27.74 -169.99 -4.71 17.71 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 28 H 0.05 0.64 5.97 -51.93 -0.31 0.33 16 29 H 0.07 1.28 6.39 -51.93 -0.33 0.95 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16 37 H 0.10 0.71 7.58 -51.93 -0.39 0.31 16 38 H 0.10 0.67 7.37 -51.93 -0.38 0.28 16 39 H 0.12 1.07 8.10 -51.93 -0.42 0.65 16 40 H 0.12 1.11 8.10 -51.93 -0.42 0.69 16 41 H 0.04 0.83 5.52 -51.93 -0.29 0.54 16 42 H 0.06 1.43 6.24 -51.93 -0.32 1.10 16 43 H 0.35 8.28 4.22 -40.82 -0.17 8.11 16 44 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 346.02 15.07 5.21 5.21 Total: -1.00 -33.98 346.02 -6.32 -40.30 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.16 Total: 5.61 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.90 Total: 1.00 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.07 Total: -55.98 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.06 Total: -8.75 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.11 Total: -5.11 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.98 -6.32 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698939487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.381 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.05 seconds