Wall clock time and date at job start Tue Mar 31 2020 15:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.52047 * 2 1 4 4 C 1.53043 * 109.49486 * 239.91461 * 2 1 3 5 5 C 1.53032 * 109.54306 * 301.41556 * 4 2 1 6 6 C 1.53197 * 109.31105 * 298.63620 * 5 4 2 7 7 N 1.46928 * 108.77801 * 54.63409 * 6 5 4 8 8 C 1.34777 * 120.63266 * 126.11523 * 7 6 5 9 9 O 1.21276 * 120.00056 * 174.40868 * 8 7 6 10 10 C 1.50699 * 119.99932 * 354.40886 * 8 7 6 11 11 C 1.52994 * 109.47228 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47302 * 180.02562 * 11 10 8 13 13 F 1.39902 * 109.46744 * 59.99915 * 12 11 10 14 14 F 1.39894 * 109.47232 * 179.97438 * 12 11 10 15 15 F 1.39894 * 109.46982 * 300.00260 * 12 11 10 16 16 C 1.46927 * 118.73687 * 306.39285 * 7 6 5 17 17 H 1.08994 * 109.58980 * 293.81978 * 16 7 6 18 18 C 1.53002 * 109.58676 * 173.39091 * 16 7 6 19 19 N 1.46500 * 109.47049 * 181.78151 * 18 16 7 20 20 C 1.36939 * 119.99590 * 184.95132 * 19 18 16 21 21 H 1.08001 * 120.00167 * 0.02562 * 20 19 18 22 22 C 1.38819 * 119.99767 * 179.97438 * 20 19 18 23 23 N 1.31614 * 119.99680 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99764 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.47288 * 89.99860 * 24 22 20 26 26 H 1.48500 * 109.46891 * 210.00037 * 24 22 20 27 27 H 1.48500 * 109.47184 * 329.99546 * 24 22 20 28 28 H 1.09004 * 109.47128 * 180.08581 * 1 2 3 29 29 H 1.08999 * 109.47412 * 300.07911 * 1 2 3 30 30 H 1.08998 * 109.47307 * 60.08597 * 1 2 3 31 31 H 1.09001 * 109.45475 * 181.39213 * 4 2 1 32 32 H 1.09001 * 109.45717 * 61.44185 * 4 2 1 33 33 H 1.08998 * 109.49897 * 178.68819 * 5 4 2 34 34 H 1.09000 * 109.52661 * 58.59784 * 5 4 2 35 35 H 1.09002 * 109.58676 * 294.84951 * 6 5 4 36 36 H 1.09004 * 109.58995 * 174.42285 * 6 5 4 37 37 H 1.08997 * 109.47410 * 300.00150 * 10 8 7 38 38 H 1.09001 * 109.47340 * 59.99793 * 10 8 7 39 39 H 1.09006 * 109.46874 * 300.00138 * 11 10 8 40 40 H 1.08994 * 109.47383 * 60.00283 * 11 10 8 41 41 H 1.08997 * 109.47364 * 301.78323 * 18 16 7 42 42 H 1.09002 * 109.46683 * 61.78107 * 18 16 7 43 43 H 0.97000 * 120.00144 * 4.95130 * 19 18 16 44 44 H 0.97003 * 119.99838 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 1.5030 -2.1558 -1.2660 6 6 2.0140 -2.9040 -0.0307 7 7 1.6515 -2.1382 1.1697 8 6 0.9696 -2.7204 2.1758 9 8 0.7645 -2.1090 3.2029 10 6 0.4618 -4.1312 2.0246 11 6 -0.2728 -4.5484 3.3001 12 6 -0.7878 -5.9810 3.1468 13 9 0.2916 -6.8435 2.9269 14 9 -1.4590 -6.3627 4.3134 15 9 -1.6662 -6.0469 2.0600 16 6 2.0413 -0.7238 1.2496 17 1 3.1274 -0.6462 1.2980 18 6 1.4228 -0.0911 2.4979 19 7 1.7780 1.3292 2.5525 20 6 1.4203 2.0830 3.6383 21 1 0.8767 1.6305 4.4545 22 6 1.7572 3.4287 3.6903 23 7 1.4139 4.1531 4.7341 24 14 2.6980 4.2111 2.2789 25 1 1.7379 4.7455 1.2801 26 1 3.5393 5.3189 2.7987 27 1 3.5647 3.1910 1.6360 28 1 -0.3633 -1.0277 0.0015 29 1 -0.3634 0.5150 0.8893 30 1 -0.3634 0.5125 -0.8907 31 1 3.1305 -0.7445 -1.2352 32 1 1.6988 -0.1959 -2.1389 33 1 1.8481 -2.6629 -2.1670 34 1 0.4132 -2.1361 -1.2543 35 1 3.0979 -3.0043 -0.0866 36 1 1.5554 -3.8919 0.0139 37 1 -0.2231 -4.1821 1.1782 38 1 1.3024 -4.8035 1.8525 39 1 0.4118 -4.4974 4.1468 40 1 -1.1135 -3.8762 3.4716 41 1 0.3384 -0.1932 2.4577 42 1 1.8025 -0.5951 3.3867 43 1 2.2665 1.7355 1.8196 44 1 1.6490 5.0935 4.7704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698939487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:49 Heat of formation + Delta-G solvation = -191.933289 kcal Electronic energy + Delta-G solvation = -29074.198436 eV Core-core repulsion = 24611.217161 eV Total energy + Delta-G solvation = -4462.981275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 4.73 seconds Orbital eigenvalues (eV) -51.08194 -48.59057 -48.54757 -41.84143 -39.00647 -36.81865 -35.03703 -34.34157 -33.79216 -32.12538 -29.35579 -27.69945 -27.34540 -25.48402 -24.51963 -23.56154 -22.41859 -21.11718 -19.85825 -19.63356 -19.53436 -19.04159 -18.48494 -17.49496 -17.26158 -16.64695 -16.35387 -16.08724 -15.79593 -15.46171 -15.42085 -15.30564 -15.01923 -14.98318 -14.80757 -14.72103 -14.71495 -14.59954 -14.40755 -13.87706 -13.76613 -13.45077 -13.31803 -13.13125 -12.82728 -12.73424 -12.60631 -12.38963 -12.33675 -12.12938 -11.98308 -11.91015 -11.79970 -11.36933 -11.24869 -10.96571 -10.18848 -9.57835 -9.20403 -8.02503 -5.35515 1.33405 1.39553 1.46717 1.61748 1.68470 2.01709 2.47634 2.83125 3.01049 3.11169 3.28225 3.51583 3.66940 3.82332 3.85300 3.92188 3.98149 3.99534 4.13903 4.23626 4.35727 4.42823 4.54438 4.63221 4.67878 4.70195 4.78675 4.84089 4.90948 4.96516 5.06258 5.15272 5.23790 5.29281 5.34377 5.38184 5.56583 5.69748 5.76155 6.20907 6.47626 7.06638 7.23714 7.84021 8.06087 9.20097 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.015536 B = 0.003666 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.834163 B = 7636.307853 C = 8942.272333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 H 0.061 0.939 4 C -0.111 4.111 5 C -0.133 4.133 6 C 0.099 3.901 7 N -0.600 5.600 8 C 0.504 3.496 9 O -0.568 6.568 10 C -0.134 4.134 11 C -0.150 4.150 12 C 0.462 3.538 13 F -0.183 7.183 14 F -0.192 7.192 15 F -0.184 7.184 16 C 0.149 3.851 17 H 0.071 0.929 18 C 0.172 3.828 19 N -0.757 5.757 20 C -0.229 4.229 21 H 0.043 0.957 22 C -0.067 4.067 23 N -0.988 5.988 24 Si 0.959 3.041 25 H -0.274 1.274 26 H -0.293 1.293 27 H -0.250 1.250 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.019 0.981 42 H 0.032 0.968 43 H 0.363 0.637 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 -24.388 -17.271 29.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.170 4.170 6 C -0.022 4.022 7 N -0.333 5.333 8 C 0.294 3.706 9 O -0.447 6.447 10 C -0.173 4.173 11 C -0.189 4.189 12 C 0.408 3.592 13 F -0.165 7.165 14 F -0.173 7.173 15 F -0.165 7.165 16 C 0.045 3.955 17 H 0.089 0.911 18 C 0.046 3.954 19 N -0.405 5.405 20 C -0.360 4.360 21 H 0.061 0.939 22 C -0.258 4.258 23 N -0.639 5.639 24 Si 0.786 3.214 25 H -0.200 1.200 26 H -0.220 1.220 27 H -0.174 1.174 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.037 0.963 42 H 0.050 0.950 43 H 0.197 0.803 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.065 -24.126 -16.549 29.256 hybrid contribution 0.203 1.044 0.179 1.078 sum 0.138 -23.082 -16.370 28.298 Atomic orbital electron populations 1.21782 0.95044 1.01798 1.00926 1.21466 0.96710 0.98989 0.94963 0.92086 1.21557 1.00928 0.96388 0.95947 1.21975 1.01682 0.95013 0.98364 1.22174 1.01857 0.95660 0.82511 1.48151 1.55592 1.10141 1.19452 1.21021 0.77650 0.89211 0.82761 1.90868 1.58397 1.65234 1.30238 1.21687 1.03426 0.93304 0.98907 1.22573 1.04532 0.89752 1.02047 1.20473 0.75423 0.90032 0.73252 1.93185 1.55235 1.73476 1.94560 1.93185 1.81541 1.92884 1.49704 1.93184 1.70563 1.97058 1.55742 1.21291 0.98301 0.80877 0.95075 0.91127 1.21207 0.96821 0.81671 0.95654 1.42870 1.68973 1.07675 1.20994 1.18939 1.28413 0.91792 0.96887 0.93921 1.25561 1.02750 0.96710 1.00735 1.69910 1.54052 1.07613 1.32304 0.85348 0.78852 0.78169 0.79079 1.20022 1.21957 1.17405 0.91615 0.95366 0.91788 0.91064 0.90580 0.87698 0.91179 0.89696 0.86572 0.85268 0.84938 0.86885 0.87213 0.96278 0.95003 0.80327 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.19 71.98 0.59 -3.20 16 2 C -0.10 -2.66 2.53 -10.71 -0.03 -2.69 16 3 H 0.06 1.85 6.89 -2.39 -0.02 1.84 16 4 C -0.11 -1.80 5.43 30.62 0.17 -1.63 16 5 C -0.13 -1.42 5.74 30.67 0.18 -1.24 16 6 C 0.10 1.12 6.35 86.36 0.55 1.67 16 7 N -0.60 -13.27 2.41 -795.00 -1.92 -15.19 16 8 C 0.50 12.50 7.53 87.66 0.66 13.16 16 9 O -0.57 -20.72 11.54 -3.02 -0.03 -20.76 16 10 C -0.13 -1.88 3.81 29.85 0.11 -1.77 16 11 C -0.15 -2.52 4.55 30.59 0.14 -2.38 16 12 C 0.46 7.39 3.16 71.98 0.23 7.62 16 13 F -0.18 -2.86 16.80 44.97 0.76 -2.10 16 14 F -0.19 -3.73 17.32 44.97 0.78 -2.95 16 15 F -0.18 -2.95 16.80 44.97 0.76 -2.20 16 16 C 0.15 4.49 2.81 44.98 0.13 4.62 16 17 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 18 C 0.17 7.45 3.60 86.38 0.31 7.76 16 19 N -0.76 -38.19 5.18 -343.44 -1.78 -39.98 16 20 C -0.23 -14.18 10.47 84.03 0.88 -13.30 16 21 H 0.04 2.98 8.06 -2.91 -0.02 2.95 16 22 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 23 N -0.99 -66.30 13.97 21.65 0.30 -66.00 16 24 Si 0.96 46.82 27.74 68.60 1.90 48.72 16 25 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 26 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 27 H -0.25 -10.86 6.52 99.48 0.65 -10.21 16 28 H 0.06 1.56 5.97 -2.39 -0.01 1.55 16 29 H 0.03 1.01 6.39 -2.39 -0.02 0.99 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 0.56 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.83 6.34 -2.39 -0.02 0.82 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.12 0.61 5.93 -2.38 -0.01 0.59 16 37 H 0.13 1.22 7.58 -2.39 -0.02 1.20 16 38 H 0.13 1.13 7.37 -2.39 -0.02 1.12 16 39 H 0.11 2.05 8.10 -2.38 -0.02 2.03 16 40 H 0.11 2.08 8.10 -2.39 -0.02 2.06 16 41 H 0.02 0.91 5.52 -2.39 -0.01 0.90 16 42 H 0.03 1.59 6.24 -2.39 -0.01 1.57 16 43 H 0.36 16.93 4.22 -92.71 -0.39 16.53 16 44 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 Total: -1.00 -80.42 346.02 5.72 -74.70 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.58 Total: 20.81 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 4.38 Total: 4.95 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -3.39 Total: -121.16 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.03 Total: -20.76 kcal Atomic # 9 Polarization: -9.54 SS G_CDS: 2.29 Total: -7.25 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.90 Total: 48.72 kcal Total: -80.42 5.72 -74.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698939487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.236 kcal (2) G-P(sol) polarization free energy of solvation -80.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.73 seconds