Wall clock time and date at job start Tue Mar 31 2020 16:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52578 * 2 1 4 4 C 1.53041 * 109.49687 * 239.91713 * 2 1 3 5 5 C 1.53044 * 109.53684 * 178.68682 * 4 2 1 6 6 C 1.52759 * 109.38465 * 61.23976 * 5 4 2 7 7 N 1.46931 * 109.01119 * 305.59011 * 6 5 4 8 8 C 1.34772 * 120.63217 * 233.58925 * 7 6 5 9 9 O 1.21279 * 120.00444 * 174.04352 * 8 7 6 10 10 C 1.50706 * 119.99668 * 353.76138 * 8 7 6 11 11 C 1.53000 * 109.46732 * 180.27995 * 10 8 7 12 12 C 1.53002 * 109.46830 * 180.02562 * 11 10 8 13 13 F 1.39899 * 109.47308 * 59.99940 * 12 11 10 14 14 F 1.39902 * 109.47230 * 179.97438 * 12 11 10 15 15 F 1.39901 * 109.46917 * 299.99987 * 12 11 10 16 16 C 1.46921 * 118.73584 * 53.30439 * 7 6 5 17 17 H 1.08998 * 109.58984 * 66.43564 * 16 7 6 18 18 C 1.53006 * 109.58701 * 186.71896 * 16 7 6 19 19 N 1.46499 * 109.46633 * 293.04993 * 18 16 7 20 20 C 1.36937 * 119.99902 * 185.81844 * 19 18 16 21 21 H 1.08001 * 119.99944 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00371 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99825 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00281 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.46953 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46794 * 120.00218 * 24 22 20 27 27 H 1.48492 * 109.47480 * 240.00220 * 24 22 20 28 28 H 1.08998 * 109.47054 * 299.92581 * 1 2 3 29 29 H 1.09002 * 109.46706 * 59.91852 * 1 2 3 30 30 H 1.08997 * 109.47484 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.45875 * 298.70572 * 4 2 1 32 32 H 1.08997 * 109.46019 * 58.67866 * 4 2 1 33 33 H 1.09002 * 109.49839 * 181.31484 * 5 4 2 34 34 H 1.08997 * 109.49524 * 301.38250 * 5 4 2 35 35 H 1.08998 * 109.51373 * 185.70391 * 6 5 4 36 36 H 1.08999 * 109.43393 * 65.42242 * 6 5 4 37 37 H 1.08998 * 109.47281 * 300.28055 * 10 8 7 38 38 H 1.08997 * 109.47181 * 60.28074 * 10 8 7 39 39 H 1.08998 * 109.47286 * 300.00056 * 11 10 8 40 40 H 1.08999 * 109.47610 * 60.00467 * 11 10 8 41 41 H 1.09000 * 109.47005 * 53.04823 * 18 16 7 42 42 H 1.08999 * 109.47514 * 173.05312 * 18 16 7 43 43 H 0.96999 * 120.00660 * 5.82207 * 19 18 16 44 44 H 0.97000 * 120.00068 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 6 4.1055 -1.4217 -0.0331 7 7 3.5046 -0.8292 1.1697 8 6 4.2811 -0.3856 2.1780 9 8 3.7817 0.1984 3.1163 10 6 5.7692 -0.6209 2.1426 11 6 6.4092 -0.0284 3.3996 12 6 7.9201 -0.2667 3.3634 13 9 8.4622 0.3484 2.2298 14 9 8.5055 0.2756 4.5125 15 9 8.1743 -1.6416 3.3144 16 6 2.0413 -0.7238 1.2496 17 1 1.6052 -1.7216 1.2980 18 6 1.6516 0.0675 2.4998 19 7 2.0088 -0.7007 3.6950 20 6 1.6468 -0.2458 4.9348 21 1 1.0984 0.6795 5.0316 22 6 1.9857 -0.9734 6.0673 23 7 2.6553 -2.1004 5.9495 24 14 1.4925 -0.3524 7.7587 25 1 0.7533 0.9279 7.6197 26 1 0.6217 -1.3571 8.4203 27 1 2.7100 -0.1349 8.5806 28 1 -0.3633 0.5127 0.8906 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6967 -1.7573 -1.2352 32 1 1.6584 -0.2244 -2.1389 33 1 3.9335 -1.1899 -2.1670 34 1 3.9159 0.3387 -1.2546 35 1 5.1895 -1.3162 0.0101 36 1 3.8412 -2.4775 -0.0914 37 1 5.9669 -1.6922 2.1046 38 1 6.1919 -0.1420 1.2594 39 1 6.2115 1.0428 3.4376 40 1 5.9866 -0.5074 4.2829 41 1 2.1827 1.0193 2.5075 42 1 0.5771 0.2509 2.4935 43 1 2.5017 -1.5316 3.6082 44 1 2.8925 -2.6086 6.7410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698939489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:11 Heat of formation + Delta-G solvation = -153.422982 kcal Electronic energy + Delta-G solvation = -29582.060653 eV Core-core repulsion = 25120.749310 eV Total energy + Delta-G solvation = -4461.311343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 11.77 seconds Orbital eigenvalues (eV) -49.98464 -47.48637 -47.45520 -40.27439 -37.41516 -34.90765 -33.42367 -33.17229 -32.08998 -30.23353 -27.75973 -26.30023 -25.83135 -23.95034 -22.54551 -22.25788 -20.90258 -20.14980 -18.90893 -18.44498 -18.02513 -17.45121 -16.88331 -15.98179 -15.50022 -15.45093 -14.75691 -14.69129 -14.39360 -14.35961 -14.02365 -13.90145 -13.68819 -13.64659 -13.60181 -13.36585 -13.30104 -12.96215 -12.72169 -12.40535 -12.39484 -12.03745 -11.94613 -11.68634 -11.46496 -11.45188 -11.16229 -10.96727 -10.86451 -10.72418 -10.61409 -10.55800 -10.14361 -9.78917 -9.52199 -8.73281 -8.35387 -8.06096 -6.49287 -5.57516 -2.76640 2.86986 3.31100 3.37008 3.54174 3.58962 3.60765 3.99592 4.17021 4.23461 4.70952 4.72895 4.80967 4.88777 4.99617 5.04571 5.12547 5.20620 5.34139 5.42363 5.55214 5.59126 5.70358 5.74886 5.79431 5.80814 5.87076 5.87680 5.91026 6.00741 6.09597 6.11698 6.16429 6.31436 6.43953 6.58673 6.67333 6.94653 7.26989 7.86242 7.95350 8.60666 8.92224 9.72294 10.31868 10.66150 11.66317 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.007479 B = 0.006763 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.974854 B = 4139.012318 C = 7369.374031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.111 3.889 7 N -0.617 5.617 8 C 0.471 3.529 9 O -0.438 6.438 10 C -0.137 4.137 11 C -0.149 4.149 12 C 0.452 3.548 13 F -0.190 7.190 14 F -0.185 7.185 15 F -0.185 7.185 16 C 0.148 3.852 17 H 0.067 0.933 18 C 0.161 3.839 19 N -0.693 5.693 20 C -0.207 4.207 21 H 0.065 0.935 22 C -0.021 4.021 23 N -0.938 5.938 24 Si 0.900 3.100 25 H -0.283 1.283 26 H -0.296 1.296 27 H -0.295 1.295 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.037 0.963 42 H 0.019 0.981 43 H 0.379 0.621 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.292 2.232 -16.695 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.173 4.173 6 C -0.013 4.013 7 N -0.355 5.355 8 C 0.256 3.744 9 O -0.305 6.305 10 C -0.177 4.177 11 C -0.187 4.187 12 C 0.398 3.602 13 F -0.172 7.172 14 F -0.166 7.166 15 F -0.166 7.166 16 C 0.045 3.955 17 H 0.085 0.915 18 C 0.034 3.966 19 N -0.336 5.336 20 C -0.339 4.339 21 H 0.083 0.917 22 C -0.216 4.216 23 N -0.589 5.589 24 Si 0.732 3.268 25 H -0.209 1.209 26 H -0.223 1.223 27 H -0.222 1.222 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.144 0.856 41 H 0.055 0.945 42 H 0.037 0.963 43 H 0.213 0.787 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.982 2.690 -15.982 17.276 hybrid contribution 0.365 -0.179 0.851 0.943 sum 6.347 2.510 -15.131 16.599 Atomic orbital electron populations 1.21839 0.94565 1.02051 1.01942 1.21474 0.95946 0.99973 0.94496 0.90956 1.21567 0.95040 1.00822 0.97593 1.21847 0.96452 1.01302 0.97684 1.21507 0.97964 0.97070 0.84728 1.47786 1.06094 1.63543 1.18063 1.20055 0.87712 0.83838 0.82834 1.91178 1.71743 1.35911 1.31674 1.21570 0.95323 1.03209 0.97612 1.22618 0.86280 1.06695 1.03137 1.20757 0.92636 0.73748 0.73078 1.93148 1.88529 1.83094 1.52381 1.93183 1.86710 1.85934 1.50817 1.93176 1.95565 1.31803 1.96095 1.21500 0.79037 0.99381 0.95605 0.91509 1.20920 0.95711 0.95225 0.84769 1.42295 1.65616 1.25059 1.00617 1.19192 1.26759 1.03854 0.84065 0.91717 1.24589 1.02015 0.97751 0.97215 1.69657 1.45574 1.16060 1.27596 0.86193 0.77454 0.77604 0.85506 1.20880 1.22348 1.22246 0.91643 0.92945 0.92624 0.91878 0.92051 0.91167 0.91679 0.90255 0.91937 0.88712 0.89111 0.86872 0.85577 0.94541 0.96344 0.78699 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.97 37.16 0.33 -1.37 16 2 C -0.10 -1.23 2.34 -90.50 -0.21 -1.45 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.11 -1.12 5.17 -26.69 -0.14 -1.25 16 5 C -0.13 -1.23 6.06 -26.83 -0.16 -1.40 16 6 C 0.11 1.20 6.29 -3.93 -0.02 1.18 16 7 N -0.62 -9.24 2.98 -165.48 -0.49 -9.73 16 8 C 0.47 8.15 6.96 -10.98 -0.08 8.07 16 9 O -0.44 -9.68 9.64 5.56 0.05 -9.63 16 10 C -0.14 -1.85 3.88 -27.88 -0.11 -1.96 16 11 C -0.15 -2.16 4.55 -26.73 -0.12 -2.28 16 12 C 0.45 6.12 3.16 37.16 0.12 6.24 16 13 F -0.19 -2.42 16.80 2.25 0.04 -2.38 16 14 F -0.19 -2.71 17.32 2.25 0.04 -2.67 16 15 F -0.18 -2.61 16.80 2.25 0.04 -2.57 16 16 C 0.15 2.38 2.41 -67.60 -0.16 2.22 16 17 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 18 C 0.16 3.34 4.77 -4.04 -0.02 3.32 16 19 N -0.69 -17.79 3.15 -59.91 -0.19 -17.98 16 20 C -0.21 -5.95 9.69 -15.06 -0.15 -6.10 16 21 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 23 N -0.94 -28.90 13.06 55.49 0.72 -28.18 16 24 Si 0.90 23.36 29.55 -169.99 -5.02 18.34 16 25 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 26 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 27 H -0.29 -7.74 7.11 56.52 0.40 -7.33 16 28 H 0.06 0.85 6.48 -51.93 -0.34 0.51 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.73 5.97 -51.93 -0.31 0.42 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.22 7.79 -51.93 -0.40 0.81 16 38 H 0.09 0.99 7.11 -51.93 -0.37 0.62 16 39 H 0.11 1.62 8.10 -51.93 -0.42 1.20 16 40 H 0.13 2.20 8.10 -51.93 -0.42 1.78 16 41 H 0.04 0.82 6.50 -51.93 -0.34 0.49 16 42 H 0.02 0.39 6.35 -51.93 -0.33 0.06 16 43 H 0.38 10.37 6.81 -40.82 -0.28 10.09 16 44 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -32.57 352.99 -6.87 -39.43 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.56 Total: 5.57 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -0.82 Total: 4.49 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.04 Total: -55.89 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.05 Total: -9.63 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.11 Total: -7.62 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.57 -6.87 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698939489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.989 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.77 seconds