Wall clock time and date at job start Tue Mar 31 2020 16:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52578 * 2 1 4 4 C 1.53041 * 109.49687 * 239.91713 * 2 1 3 5 5 C 1.53044 * 109.53684 * 178.68682 * 4 2 1 6 6 C 1.52759 * 109.38465 * 61.23976 * 5 4 2 7 7 N 1.46931 * 109.01119 * 305.59011 * 6 5 4 8 8 C 1.34772 * 120.63217 * 233.58925 * 7 6 5 9 9 O 1.21279 * 120.00444 * 174.04352 * 8 7 6 10 10 C 1.50706 * 119.99668 * 353.76138 * 8 7 6 11 11 C 1.53000 * 109.46732 * 180.27995 * 10 8 7 12 12 C 1.53002 * 109.46830 * 180.02562 * 11 10 8 13 13 F 1.39899 * 109.47308 * 59.99940 * 12 11 10 14 14 F 1.39902 * 109.47230 * 179.97438 * 12 11 10 15 15 F 1.39901 * 109.46917 * 299.99987 * 12 11 10 16 16 C 1.46921 * 118.73584 * 53.30439 * 7 6 5 17 17 H 1.08998 * 109.58984 * 66.43564 * 16 7 6 18 18 C 1.53006 * 109.58701 * 186.71896 * 16 7 6 19 19 N 1.46499 * 109.46633 * 293.04993 * 18 16 7 20 20 C 1.36937 * 119.99902 * 185.81844 * 19 18 16 21 21 H 1.08001 * 119.99944 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00371 * 180.02562 * 20 19 18 23 23 N 1.31620 * 119.99825 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00281 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.46953 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46794 * 120.00218 * 24 22 20 27 27 H 1.48492 * 109.47480 * 240.00220 * 24 22 20 28 28 H 1.08998 * 109.47054 * 299.92581 * 1 2 3 29 29 H 1.09002 * 109.46706 * 59.91852 * 1 2 3 30 30 H 1.08997 * 109.47484 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.45875 * 298.70572 * 4 2 1 32 32 H 1.08997 * 109.46019 * 58.67866 * 4 2 1 33 33 H 1.09002 * 109.49839 * 181.31484 * 5 4 2 34 34 H 1.08997 * 109.49524 * 301.38250 * 5 4 2 35 35 H 1.08998 * 109.51373 * 185.70391 * 6 5 4 36 36 H 1.08999 * 109.43393 * 65.42242 * 6 5 4 37 37 H 1.08998 * 109.47281 * 300.28055 * 10 8 7 38 38 H 1.08997 * 109.47181 * 60.28074 * 10 8 7 39 39 H 1.08998 * 109.47286 * 300.00056 * 11 10 8 40 40 H 1.08999 * 109.47610 * 60.00467 * 11 10 8 41 41 H 1.09000 * 109.47005 * 53.04823 * 18 16 7 42 42 H 1.08999 * 109.47514 * 173.05312 * 18 16 7 43 43 H 0.96999 * 120.00660 * 5.82207 * 19 18 16 44 44 H 0.97000 * 120.00068 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 6 4.1055 -1.4217 -0.0331 7 7 3.5046 -0.8292 1.1697 8 6 4.2811 -0.3856 2.1780 9 8 3.7817 0.1984 3.1163 10 6 5.7692 -0.6209 2.1426 11 6 6.4092 -0.0284 3.3996 12 6 7.9201 -0.2667 3.3634 13 9 8.4622 0.3484 2.2298 14 9 8.5055 0.2756 4.5125 15 9 8.1743 -1.6416 3.3144 16 6 2.0413 -0.7238 1.2496 17 1 1.6052 -1.7216 1.2980 18 6 1.6516 0.0675 2.4998 19 7 2.0088 -0.7007 3.6950 20 6 1.6468 -0.2458 4.9348 21 1 1.0984 0.6795 5.0316 22 6 1.9857 -0.9734 6.0673 23 7 2.6553 -2.1004 5.9495 24 14 1.4925 -0.3524 7.7587 25 1 0.7533 0.9279 7.6197 26 1 0.6217 -1.3571 8.4203 27 1 2.7100 -0.1349 8.5806 28 1 -0.3633 0.5127 0.8906 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6967 -1.7573 -1.2352 32 1 1.6584 -0.2244 -2.1389 33 1 3.9335 -1.1899 -2.1670 34 1 3.9159 0.3387 -1.2546 35 1 5.1895 -1.3162 0.0101 36 1 3.8412 -2.4775 -0.0914 37 1 5.9669 -1.6922 2.1046 38 1 6.1919 -0.1420 1.2594 39 1 6.2115 1.0428 3.4376 40 1 5.9866 -0.5074 4.2829 41 1 2.1827 1.0193 2.5075 42 1 0.5771 0.2509 2.4935 43 1 2.5017 -1.5316 3.6082 44 1 2.8925 -2.6086 6.7410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698939489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:10 Heat of formation + Delta-G solvation = -172.961833 kcal Electronic energy + Delta-G solvation = -29582.907921 eV Core-core repulsion = 25120.749310 eV Total energy + Delta-G solvation = -4462.158611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -51.11323 -48.61866 -48.57432 -41.55210 -38.60306 -36.54734 -34.87481 -34.36577 -33.54162 -31.91966 -29.11093 -27.50767 -27.04172 -25.56949 -24.08742 -23.38930 -22.17957 -21.19852 -20.13227 -19.56537 -19.34908 -18.96544 -18.41218 -17.26052 -16.81102 -16.69943 -16.51188 -15.79427 -15.51973 -15.47010 -15.41540 -15.07214 -15.02247 -14.86454 -14.80969 -14.72557 -14.65108 -14.19287 -14.10681 -13.72981 -13.62869 -13.33581 -13.10529 -12.94079 -12.86115 -12.80221 -12.62964 -12.43128 -12.32433 -12.05359 -11.88781 -11.82887 -11.58394 -11.45502 -11.06354 -10.84248 -9.83129 -9.40607 -8.54557 -7.82555 -4.99636 1.44233 1.45567 1.54677 1.70412 2.00279 2.19210 2.62270 2.84656 3.03251 3.09636 3.51147 3.68940 3.79338 3.80226 3.96876 4.00748 4.09620 4.18745 4.32218 4.38645 4.45965 4.50650 4.61198 4.68683 4.72546 4.84907 4.87441 4.89826 4.91765 4.99862 5.08455 5.16566 5.28428 5.31709 5.36899 5.43114 5.54298 5.59343 5.88807 6.38711 6.71189 7.45376 7.60516 8.25490 8.48501 9.41824 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.007479 B = 0.006763 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.974854 B = 4139.012318 C = 7369.374031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.128 4.128 6 C 0.101 3.899 7 N -0.615 5.615 8 C 0.469 3.531 9 O -0.500 6.500 10 C -0.128 4.128 11 C -0.143 4.143 12 C 0.464 3.536 13 F -0.179 7.179 14 F -0.192 7.192 15 F -0.186 7.186 16 C 0.153 3.847 17 H 0.056 0.944 18 C 0.165 3.835 19 N -0.699 5.699 20 C -0.206 4.206 21 H 0.059 0.941 22 C -0.081 4.081 23 N -0.970 5.970 24 Si 0.960 3.040 25 H -0.273 1.273 26 H -0.295 1.295 27 H -0.299 1.299 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.368 0.632 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.938 2.304 -19.538 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.166 4.166 6 C -0.020 4.020 7 N -0.352 5.352 8 C 0.255 3.745 9 O -0.372 6.372 10 C -0.168 4.168 11 C -0.182 4.182 12 C 0.410 3.590 13 F -0.160 7.160 14 F -0.173 7.173 15 F -0.167 7.167 16 C 0.050 3.950 17 H 0.074 0.926 18 C 0.039 3.961 19 N -0.340 5.340 20 C -0.339 4.339 21 H 0.077 0.923 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.792 3.208 25 H -0.198 1.198 26 H -0.222 1.222 27 H -0.227 1.227 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.200 0.800 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.617 2.771 -18.904 20.219 hybrid contribution 0.182 -0.160 1.611 1.629 sum 6.800 2.611 -17.293 18.764 Atomic orbital electron populations 1.21825 0.94035 1.02235 1.02113 1.21414 0.96365 0.99361 0.93923 0.91652 1.21565 0.95735 1.00789 0.96529 1.21836 0.95663 1.01355 0.97776 1.21887 0.99184 0.97481 0.83493 1.47961 1.05555 1.62662 1.18993 1.20770 0.89344 0.82047 0.82291 1.91158 1.73205 1.39048 1.33805 1.21563 0.92529 1.04252 0.98413 1.22458 0.87069 1.06346 1.02341 1.20424 0.91787 0.73636 0.73129 1.93169 1.88290 1.82893 1.51681 1.93173 1.86721 1.86045 1.51370 1.93176 1.95516 1.31949 1.96103 1.21344 0.80190 0.98365 0.95151 0.92605 1.20919 0.94981 0.94796 0.85389 1.42336 1.65545 1.24976 1.01130 1.19468 1.25516 1.03205 0.85711 0.92263 1.25262 1.03138 0.98406 1.00408 1.69801 1.47363 1.17258 1.27875 0.85229 0.76818 0.77381 0.81413 1.19817 1.22231 1.22704 0.93780 0.90441 0.92433 0.91520 0.89871 0.88047 0.91772 0.88091 0.91161 0.87464 0.85450 0.86975 0.89118 0.96322 0.96708 0.80009 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.97 71.98 0.65 -2.52 16 2 C -0.09 -2.11 2.34 -10.71 -0.03 -2.14 16 3 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.11 -1.76 5.17 30.62 0.16 -1.60 16 5 C -0.13 -1.80 6.06 30.53 0.19 -1.62 16 6 C 0.10 1.86 6.29 86.22 0.54 2.40 16 7 N -0.62 -17.77 2.98 -795.84 -2.37 -20.14 16 8 C 0.47 16.21 6.96 87.66 0.61 16.82 16 9 O -0.50 -22.99 9.64 -3.03 -0.03 -23.02 16 10 C -0.13 -3.27 3.88 29.85 0.12 -3.16 16 11 C -0.14 -4.18 4.55 30.60 0.14 -4.04 16 12 C 0.46 12.07 3.16 71.98 0.23 12.30 16 13 F -0.18 -4.13 16.80 44.97 0.76 -3.37 16 14 F -0.19 -5.52 17.32 44.97 0.78 -4.74 16 15 F -0.19 -5.01 16.80 44.97 0.76 -4.26 16 16 C 0.15 4.91 2.41 44.98 0.11 5.01 16 17 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 18 C 0.17 7.11 4.77 86.38 0.41 7.52 16 19 N -0.70 -37.36 3.15 -343.44 -1.08 -38.44 16 20 C -0.21 -12.29 9.69 84.03 0.81 -11.47 16 21 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 22 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 23 N -0.97 -61.74 13.06 21.65 0.28 -61.46 16 24 Si 0.96 49.42 29.55 68.60 2.03 51.45 16 25 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 27 H -0.30 -15.48 7.11 99.48 0.71 -14.77 16 28 H 0.04 1.14 6.48 -2.39 -0.02 1.12 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 1.43 5.97 -2.39 -0.01 1.41 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.11 2.54 7.79 -2.39 -0.02 2.52 16 38 H 0.13 2.34 7.11 -2.39 -0.02 2.32 16 39 H 0.11 3.26 8.10 -2.39 -0.02 3.24 16 40 H 0.09 3.34 8.10 -2.39 -0.02 3.32 16 41 H 0.02 0.89 6.50 -2.39 -0.02 0.87 16 42 H 0.02 0.66 6.35 -2.39 -0.02 0.64 16 43 H 0.37 20.97 6.81 -92.71 -0.63 20.34 16 44 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -73.82 352.99 5.90 -67.91 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.39 Total: 23.01 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 4.40 Total: 13.05 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -3.17 Total: -120.04 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.03 Total: -23.02 kcal Atomic # 9 Polarization: -14.66 SS G_CDS: 2.29 Total: -12.37 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.03 Total: 51.45 kcal Total: -73.82 5.90 -67.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698939489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.048 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds