Wall clock time and date at job start Tue Mar 31 2020 16:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.49713 * 2 1 4 4 C 1.53042 * 109.52307 * 120.08043 * 2 1 3 5 5 C 1.53038 * 109.53689 * 58.59852 * 4 2 1 6 6 C 1.52755 * 109.38267 * 61.24398 * 5 4 2 7 7 N 1.46923 * 109.00975 * 305.58286 * 6 5 4 8 8 C 1.34777 * 120.63582 * 233.58578 * 7 6 5 9 9 O 1.21277 * 120.00285 * 174.07236 * 8 7 6 10 10 C 1.50700 * 119.99748 * 354.34897 * 8 7 6 11 11 C 1.52989 * 109.47133 * 179.72706 * 10 8 7 12 12 C 1.53001 * 109.47157 * 180.02562 * 11 10 8 13 13 F 1.39903 * 109.47458 * 59.99764 * 12 11 10 14 14 F 1.39905 * 109.47373 * 180.02562 * 12 11 10 15 15 F 1.39899 * 109.47089 * 299.99425 * 12 11 10 16 16 C 1.46934 * 118.73367 * 53.31045 * 7 6 5 17 17 H 1.08993 * 109.58555 * 66.43537 * 16 7 6 18 18 C 1.53003 * 109.58305 * 186.85745 * 16 7 6 19 19 N 1.46498 * 109.47108 * 292.81800 * 18 16 7 20 20 C 1.36938 * 120.00308 * 185.83042 * 19 18 16 21 21 H 1.08005 * 119.99823 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00598 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99524 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00136 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47472 * 89.99957 * 24 22 20 26 26 H 1.48503 * 109.47059 * 210.00158 * 24 22 20 27 27 H 1.48506 * 109.47297 * 329.99912 * 24 22 20 28 28 H 1.08990 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47292 * 300.07176 * 1 2 3 30 30 H 1.09001 * 109.47034 * 60.06554 * 1 2 3 31 31 H 1.08991 * 109.46167 * 178.62519 * 4 2 1 32 32 H 1.09003 * 109.45871 * 298.59762 * 4 2 1 33 33 H 1.09006 * 109.49426 * 181.31652 * 5 4 2 34 34 H 1.09001 * 109.50171 * 301.41312 * 5 4 2 35 35 H 1.09002 * 109.51150 * 185.70159 * 6 5 4 36 36 H 1.09005 * 109.43725 * 65.41858 * 6 5 4 37 37 H 1.09000 * 109.46840 * 299.72601 * 10 8 7 38 38 H 1.08995 * 109.47200 * 59.71981 * 10 8 7 39 39 H 1.09000 * 109.47172 * 299.99692 * 11 10 8 40 40 H 1.08995 * 109.47669 * 59.99563 * 11 10 8 41 41 H 1.09000 * 109.47630 * 52.81634 * 18 16 7 42 42 H 1.09002 * 109.46767 * 172.81942 * 18 16 7 43 43 H 0.97004 * 120.00116 * 5.82267 * 19 18 16 44 44 H 0.96998 * 119.99876 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0415 -0.7230 1.2482 5 6 1.5042 -2.1558 1.2659 6 6 2.0104 -2.9023 0.0329 7 7 1.6522 -2.1381 -1.1697 8 6 0.9746 -2.7219 -2.1779 9 8 0.5910 -2.0563 -3.1163 10 6 0.6882 -4.2009 -2.1362 11 6 -0.0937 -4.6044 -3.3877 12 6 -0.3850 -6.1059 -3.3451 13 9 -1.1422 -6.4019 -2.2065 14 9 -1.0995 -6.4750 -4.4899 15 9 0.8209 -6.8137 -3.3003 16 6 2.0413 -0.7235 -1.2497 17 1 3.1274 -0.6455 -1.2984 18 6 1.4223 -0.0911 -2.4978 19 7 2.0278 -0.6796 -3.6950 20 6 1.7172 -0.1845 -4.9334 21 1 1.0254 0.6395 -5.0276 22 6 2.2914 -0.7418 -6.0677 23 7 3.1348 -1.7456 -5.9529 24 14 1.8670 -0.0669 -7.7570 25 1 2.8187 1.0169 -8.1106 26 1 1.9606 -1.1555 -8.7627 27 1 0.4842 0.4745 -7.7408 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5150 0.8894 30 1 -0.3633 0.5128 -0.8906 31 1 3.1311 -0.7438 1.2349 32 1 1.6992 -0.1961 2.1389 33 1 1.8498 -2.6628 2.1669 34 1 0.4145 -2.1360 1.2543 35 1 1.5490 -3.8889 -0.0102 36 1 3.0940 -3.0056 0.0909 37 1 1.6279 -4.7521 -2.1014 38 1 0.0986 -4.4319 -1.2491 39 1 -1.0334 -4.0533 -3.4225 40 1 0.4960 -4.3734 -4.2748 41 1 0.3483 -0.2773 -2.5050 42 1 1.6047 0.9835 -2.4891 43 1 2.6490 -1.4198 -3.6104 44 1 3.5363 -2.1348 -6.7455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698939492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:24 Heat of formation + Delta-G solvation = -168.440087 kcal Electronic energy + Delta-G solvation = -29822.232733 eV Core-core repulsion = 25360.270200 eV Total energy + Delta-G solvation = -4461.962533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.10850 -48.61355 -48.57078 -41.65379 -38.66370 -36.52051 -34.80246 -34.18287 -33.51923 -31.78736 -28.96429 -27.58779 -27.17634 -25.63395 -24.18931 -23.72716 -22.33890 -20.88731 -19.69087 -19.55639 -19.38873 -18.80995 -18.30939 -17.23260 -16.89287 -16.74695 -16.40654 -15.80190 -15.72088 -15.49460 -15.32873 -15.11673 -15.02194 -14.90283 -14.79113 -14.74241 -14.62932 -14.33014 -13.99739 -13.86470 -13.59797 -13.25451 -13.18414 -12.91084 -12.80307 -12.68025 -12.56216 -12.36501 -12.30278 -12.07372 -11.97102 -11.80966 -11.57301 -11.21185 -11.14477 -10.81637 -9.79300 -9.36427 -8.53573 -7.81937 -4.98782 1.44543 1.46055 1.54122 1.71279 2.03412 2.21184 2.62816 2.85517 3.03899 3.10121 3.51613 3.70262 3.79281 3.85420 3.95906 4.02994 4.11909 4.20564 4.32034 4.40077 4.46589 4.55350 4.59985 4.71913 4.73742 4.86811 4.87646 4.90740 4.97057 5.00174 5.06967 5.17154 5.30023 5.34462 5.36075 5.44442 5.55197 5.62637 5.92132 6.39413 6.74061 7.46084 7.63582 8.26881 8.49581 9.42312 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.007569 B = 0.006894 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3698.207638 B = 4060.289584 C = 7078.585090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.079 0.921 4 C -0.108 4.108 5 C -0.130 4.130 6 C 0.102 3.898 7 N -0.610 5.610 8 C 0.471 3.529 9 O -0.499 6.499 10 C -0.129 4.129 11 C -0.143 4.143 12 C 0.464 3.536 13 F -0.179 7.179 14 F -0.192 7.192 15 F -0.186 7.186 16 C 0.152 3.848 17 H 0.055 0.945 18 C 0.165 3.835 19 N -0.700 5.700 20 C -0.207 4.207 21 H 0.059 0.941 22 C -0.081 4.081 23 N -0.970 5.970 24 Si 0.960 3.040 25 H -0.290 1.290 26 H -0.298 1.298 27 H -0.279 1.279 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.033 0.967 42 H 0.004 0.996 43 H 0.368 0.632 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 -6.370 19.526 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.145 4.145 5 C -0.168 4.168 6 C -0.020 4.020 7 N -0.346 5.346 8 C 0.257 3.743 9 O -0.371 6.371 10 C -0.169 4.169 11 C -0.182 4.182 12 C 0.410 3.590 13 F -0.160 7.160 14 F -0.173 7.173 15 F -0.168 7.168 16 C 0.048 3.952 17 H 0.073 0.927 18 C 0.039 3.961 19 N -0.341 5.341 20 C -0.340 4.340 21 H 0.077 0.923 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.792 3.208 25 H -0.217 1.217 26 H -0.225 1.225 27 H -0.205 1.205 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.050 0.950 42 H 0.022 0.978 43 H 0.200 0.800 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.551 -5.921 18.889 20.559 hybrid contribution 0.172 -0.149 -1.607 1.623 sum -5.379 -6.070 17.282 19.091 Atomic orbital electron populations 1.21785 0.94772 1.01715 1.01190 1.21436 0.96657 0.99399 0.93942 0.90229 1.21514 1.00637 0.95875 0.96514 1.21876 1.01569 0.95733 0.97658 1.21873 1.00885 0.95680 0.83568 1.47875 1.57406 1.10536 1.18831 1.20719 0.81109 0.90163 0.82328 1.91158 1.48379 1.63847 1.33731 1.21567 1.02879 0.93966 0.98446 1.22455 1.05344 0.87996 1.02397 1.20441 0.73820 0.91627 0.73132 1.93170 1.76751 1.94825 1.51297 1.93173 1.79172 1.93282 1.51689 1.93175 1.45880 1.81602 1.96120 1.21306 0.97542 0.81150 0.95194 0.92701 1.20946 0.96832 0.93034 0.85281 1.42337 1.51552 1.39054 1.01130 1.19430 1.18433 1.10339 0.85781 0.92320 1.25254 1.01587 0.99977 1.00386 1.69793 1.35970 1.28664 1.27879 0.85302 0.77570 0.76811 0.81152 1.21730 1.22535 1.20460 0.92767 0.91088 0.94660 0.91616 0.89954 0.88315 0.91259 0.88167 0.91262 0.87536 0.85499 0.86960 0.89093 0.94982 0.97838 0.80002 0.94773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.21 71.98 0.59 -2.57 16 2 C -0.09 -2.16 2.81 -10.72 -0.03 -2.19 16 3 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 4 C -0.11 -1.71 5.43 30.62 0.17 -1.54 16 5 C -0.13 -1.79 5.72 30.53 0.17 -1.62 16 6 C 0.10 1.83 6.30 86.22 0.54 2.37 16 7 N -0.61 -17.14 2.42 -795.86 -1.92 -19.06 16 8 C 0.47 15.92 6.97 87.66 0.61 16.53 16 9 O -0.50 -22.56 9.65 -3.02 -0.03 -22.59 16 10 C -0.13 -3.25 3.88 29.84 0.12 -3.13 16 11 C -0.14 -4.11 4.55 30.59 0.14 -3.98 16 12 C 0.46 11.95 3.16 71.98 0.23 12.18 16 13 F -0.18 -4.09 16.80 44.97 0.76 -3.34 16 14 F -0.19 -5.47 17.32 44.97 0.78 -4.70 16 15 F -0.19 -4.98 16.80 44.97 0.76 -4.23 16 16 C 0.15 4.80 2.66 44.97 0.12 4.92 16 17 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 18 C 0.17 7.04 4.13 86.38 0.36 7.40 16 19 N -0.70 -37.29 3.15 -343.44 -1.08 -38.37 16 20 C -0.21 -12.33 9.69 84.03 0.81 -11.51 16 21 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 22 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 23 N -0.97 -61.74 13.06 21.65 0.28 -61.45 16 24 Si 0.96 49.43 29.55 68.60 2.03 51.45 16 25 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 26 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 27 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 28 H 0.05 1.27 5.97 -2.39 -0.01 1.25 16 29 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.03 0.98 6.51 -2.39 -0.02 0.97 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.07 1.00 6.34 -2.39 -0.02 0.99 16 35 H 0.10 1.39 5.96 -2.39 -0.01 1.37 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.11 2.49 7.79 -2.39 -0.02 2.47 16 38 H 0.13 2.29 7.10 -2.39 -0.02 2.27 16 39 H 0.11 3.22 8.10 -2.39 -0.02 3.20 16 40 H 0.09 3.31 8.10 -2.39 -0.02 3.29 16 41 H 0.03 1.47 5.11 -2.39 -0.01 1.46 16 42 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.37 20.90 6.83 -92.71 -0.63 20.27 16 44 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -73.40 348.13 6.25 -67.14 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.39 Total: 22.74 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 4.30 Total: 12.41 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -2.72 Total: -118.89 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.03 Total: -22.59 kcal Atomic # 9 Polarization: -14.55 SS G_CDS: 2.29 Total: -12.26 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.03 Total: 51.45 kcal Total: -73.40 6.25 -67.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698939492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.295 kcal (2) G-P(sol) polarization free energy of solvation -73.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds