Wall clock time and date at job start Tue Mar 31 2020 16:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52472 * 2 1 4 4 C 1.53046 * 109.49679 * 120.07849 * 2 1 3 5 5 C 1.53035 * 109.53650 * 181.31756 * 4 2 1 6 6 C 1.53190 * 109.31517 * 298.63463 * 5 4 2 7 7 N 1.46922 * 108.77726 * 54.63367 * 6 5 4 8 8 C 1.34776 * 120.63013 * 126.36713 * 7 6 5 9 9 O 1.21279 * 120.00380 * 174.86968 * 8 7 6 10 10 C 1.50698 * 120.00183 * 354.87120 * 8 7 6 11 11 C 1.52999 * 109.47656 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47638 * 179.97438 * 11 10 8 13 13 F 1.39903 * 109.46921 * 59.99830 * 12 11 10 14 14 F 1.39897 * 109.47368 * 180.02562 * 12 11 10 15 15 F 1.39901 * 109.47418 * 300.00302 * 12 11 10 16 16 C 1.46927 * 118.73970 * 306.64932 * 7 6 5 17 17 H 1.09001 * 109.57924 * 293.56328 * 16 7 6 18 18 C 1.52999 * 109.58618 * 173.14035 * 16 7 6 19 19 N 1.46498 * 109.47328 * 73.20087 * 18 16 7 20 20 C 1.36930 * 120.00360 * 174.77666 * 19 18 16 21 21 H 1.08002 * 120.00072 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00269 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00113 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00174 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47070 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47034 * 120.00050 * 24 22 20 27 27 H 1.48494 * 109.47495 * 240.00717 * 24 22 20 28 28 H 1.08996 * 109.47265 * 299.92189 * 1 2 3 29 29 H 1.08997 * 109.46844 * 59.92783 * 1 2 3 30 30 H 1.09010 * 109.46835 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.45789 * 61.29926 * 4 2 1 32 32 H 1.09003 * 109.45969 * 301.33961 * 4 2 1 33 33 H 1.09005 * 109.49968 * 178.68444 * 5 4 2 34 34 H 1.08997 * 109.50356 * 58.58718 * 5 4 2 35 35 H 1.08999 * 109.58805 * 294.84800 * 6 5 4 36 36 H 1.09003 * 109.58543 * 174.42888 * 6 5 4 37 37 H 1.09006 * 109.47517 * 59.99697 * 10 8 7 38 38 H 1.09004 * 109.47320 * 300.00305 * 10 8 7 39 39 H 1.08994 * 109.47324 * 300.00583 * 11 10 8 40 40 H 1.09010 * 109.46562 * 59.99947 * 11 10 8 41 41 H 1.09002 * 109.46806 * 193.20289 * 18 16 7 42 42 H 1.08996 * 109.47080 * 313.20138 * 18 16 7 43 43 H 0.97008 * 119.99868 * 354.78164 * 19 18 16 44 44 H 0.96996 * 119.99956 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 3.5708 -0.6950 1.2661 6 6 4.1053 -1.4267 0.0309 7 7 3.5047 -0.8292 -1.1695 8 6 4.2812 -0.3857 -2.1778 9 8 3.7729 0.0196 -3.2016 10 6 5.7812 -0.3934 -2.0331 11 6 6.4197 0.1558 -3.3104 12 6 7.9426 0.1486 -3.1633 13 9 8.3840 -1.1613 -2.9473 14 9 8.5263 0.6513 -4.3311 15 9 8.3100 0.9496 -2.0767 16 6 2.0416 -0.7188 -1.2471 17 1 1.6022 -1.7150 -1.2975 18 6 1.6529 0.0800 -2.4928 19 7 1.8675 -0.7417 -3.6865 20 6 1.4874 -0.2750 -4.9164 21 1 1.0298 0.6991 -5.0066 22 6 1.6912 -1.0534 -6.0475 23 7 2.2493 -2.2404 -5.9378 24 14 1.1734 -0.4164 -7.7255 25 1 0.5753 0.9349 -7.5790 26 1 2.3612 -0.3379 -8.6133 27 1 0.1725 -1.3395 -8.3182 28 1 -0.3633 0.5126 0.8906 29 1 -0.3633 0.5149 -0.8893 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6968 -1.7572 1.2354 32 1 1.6581 -0.2244 2.1390 33 1 3.9334 -1.1896 2.1672 34 1 3.9159 0.3389 1.2541 35 1 3.8376 -2.4818 0.0869 36 1 5.1896 -1.3246 -0.0135 37 1 6.1249 -1.4142 -1.8655 38 1 6.0678 0.2301 -1.1861 39 1 6.1332 -0.4679 -4.1571 40 1 6.0761 1.1766 -3.4784 41 1 0.6020 0.3623 -2.4301 42 1 2.2673 0.9782 -2.5548 43 1 2.2788 -1.6166 -3.6056 44 1 2.3921 -2.7841 -6.7282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698939494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:35 Heat of formation + Delta-G solvation = -155.518778 kcal Electronic energy + Delta-G solvation = -29455.591493 eV Core-core repulsion = 24994.189269 eV Total energy + Delta-G solvation = -4461.402223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 12.09 seconds Orbital eigenvalues (eV) -50.05941 -47.55460 -47.53642 -40.29922 -37.46437 -34.90802 -33.44636 -33.25129 -32.08398 -30.21062 -27.79235 -26.34203 -25.83736 -23.95990 -22.59060 -22.30817 -20.89311 -20.15282 -18.93454 -18.52135 -18.07684 -17.51913 -16.86294 -16.03972 -15.60433 -15.47206 -14.75128 -14.69283 -14.47047 -14.38053 -14.06156 -13.97116 -13.74038 -13.71444 -13.65859 -13.48331 -13.30334 -12.95356 -12.67742 -12.47182 -12.33960 -12.00997 -11.97505 -11.77730 -11.51280 -11.47202 -11.21500 -10.98031 -10.88029 -10.70454 -10.62799 -10.58001 -10.13487 -9.77647 -9.49493 -8.66953 -8.47693 -8.05947 -6.48998 -5.53693 -2.73186 2.79195 3.24432 3.30520 3.55203 3.60326 3.62258 3.91659 4.09044 4.15143 4.69278 4.73236 4.78903 4.86980 4.92660 5.01958 5.06734 5.10674 5.30978 5.39313 5.49656 5.57986 5.70269 5.73566 5.76349 5.79479 5.81279 5.87396 5.89773 5.97516 6.00973 6.10001 6.16661 6.30893 6.43301 6.60329 6.67590 6.92926 7.24720 7.88289 7.89418 8.64487 8.86290 9.76310 10.37474 10.71997 11.70392 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.007706 B = 0.006247 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3632.756963 B = 4480.897130 C = 7558.650492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.135 4.135 6 C 0.109 3.891 7 N -0.615 5.615 8 C 0.476 3.524 9 O -0.439 6.439 10 C -0.140 4.140 11 C -0.149 4.149 12 C 0.452 3.548 13 F -0.186 7.186 14 F -0.184 7.184 15 F -0.189 7.189 16 C 0.147 3.853 17 H 0.068 0.932 18 C 0.162 3.838 19 N -0.695 5.695 20 C -0.205 4.205 21 H 0.064 0.936 22 C -0.022 4.022 23 N -0.938 5.938 24 Si 0.899 3.101 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.296 1.296 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.021 0.979 42 H 0.032 0.968 43 H 0.380 0.620 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 3.177 17.118 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.173 4.173 6 C -0.014 4.014 7 N -0.352 5.352 8 C 0.261 3.739 9 O -0.307 6.307 10 C -0.181 4.181 11 C -0.188 4.188 12 C 0.398 3.602 13 F -0.167 7.167 14 F -0.166 7.166 15 F -0.170 7.170 16 C 0.044 3.956 17 H 0.086 0.914 18 C 0.034 3.966 19 N -0.338 5.338 20 C -0.337 4.337 21 H 0.082 0.918 22 C -0.217 4.217 23 N -0.589 5.589 24 Si 0.732 3.268 25 H -0.209 1.209 26 H -0.223 1.223 27 H -0.224 1.224 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.038 0.962 42 H 0.050 0.950 43 H 0.213 0.787 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.196 3.541 16.368 18.227 hybrid contribution 0.355 -0.101 -0.803 0.884 sum 7.550 3.440 15.565 17.638 Atomic orbital electron populations 1.21851 0.94440 1.02143 1.01969 1.21393 0.96060 0.99937 0.94482 0.91024 1.21572 0.95010 1.00874 0.97608 1.21923 0.96460 1.01236 0.97670 1.21628 0.97978 0.97073 0.84737 1.47877 1.06271 1.62892 1.18202 1.20194 0.87882 0.81842 0.84019 1.91274 1.72287 1.41272 1.25818 1.21620 0.95371 1.03454 0.97616 1.22620 0.85962 1.07933 1.02263 1.20737 0.92933 0.73206 0.73323 1.93173 1.91590 1.37313 1.94644 1.93186 1.86789 1.87504 1.49106 1.93156 1.93522 1.74261 1.56088 1.21412 0.78910 0.99614 0.95632 0.91382 1.20888 0.96225 0.94475 0.85015 1.42192 1.71911 1.18355 1.01301 1.19180 1.29878 0.99776 0.84864 0.91829 1.24580 1.02853 0.97018 0.97212 1.69662 1.50645 1.10972 1.27668 0.86205 0.77511 0.77598 0.85520 1.20912 1.22314 1.22377 0.92946 0.91534 0.92576 0.91841 0.92012 0.91169 0.91642 0.91750 0.90214 0.88720 0.88835 0.85874 0.86641 0.96201 0.95046 0.78674 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.99 37.16 0.33 -1.38 16 2 C -0.10 -1.22 2.32 -90.72 -0.21 -1.43 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.11 5.17 -26.69 -0.14 -1.25 16 5 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 6 C 0.11 1.15 6.35 -3.71 -0.02 1.13 16 7 N -0.61 -9.05 2.98 -165.48 -0.49 -9.54 16 8 C 0.48 8.02 7.31 -10.99 -0.08 7.94 16 9 O -0.44 -9.66 9.71 5.56 0.05 -9.60 16 10 C -0.14 -1.78 3.81 -27.88 -0.11 -1.88 16 11 C -0.15 -2.02 4.55 -26.73 -0.12 -2.15 16 12 C 0.45 5.72 3.16 37.16 0.12 5.84 16 13 F -0.19 -2.42 16.80 2.25 0.04 -2.38 16 14 F -0.18 -2.55 17.32 2.25 0.04 -2.51 16 15 F -0.19 -2.29 16.80 2.25 0.04 -2.25 16 16 C 0.15 2.37 2.35 -67.82 -0.16 2.21 16 17 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 18 C 0.16 3.34 4.84 -4.04 -0.02 3.32 16 19 N -0.69 -17.99 3.19 -59.91 -0.19 -18.18 16 20 C -0.20 -5.95 9.73 -15.06 -0.15 -6.09 16 21 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 22 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 23 N -0.94 -29.34 13.06 55.49 0.72 -28.61 16 24 Si 0.90 23.52 29.55 -169.99 -5.02 18.49 16 25 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 27 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.87 6.36 -51.93 -0.33 0.54 16 30 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.70 5.93 -51.93 -0.31 0.40 16 37 H 0.09 1.09 7.39 -51.93 -0.38 0.71 16 38 H 0.09 0.97 7.56 -51.93 -0.39 0.58 16 39 H 0.12 1.94 8.10 -51.93 -0.42 1.52 16 40 H 0.12 1.58 8.10 -51.92 -0.42 1.16 16 41 H 0.02 0.42 6.12 -51.93 -0.32 0.10 16 42 H 0.03 0.71 6.37 -51.93 -0.33 0.38 16 43 H 0.38 10.55 7.22 -40.82 -0.29 10.25 16 44 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -33.19 353.45 -6.85 -40.04 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.55 Total: 5.09 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -0.81 Total: 4.13 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.04 Total: -56.34 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.05 Total: -9.60 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 0.11 Total: -7.14 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.49 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.19 -6.85 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698939494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.478 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.09 seconds