Wall clock time and date at job start Tue Mar 31 2020 16:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52472 * 2 1 4 4 C 1.53046 * 109.49679 * 120.07849 * 2 1 3 5 5 C 1.53035 * 109.53650 * 181.31756 * 4 2 1 6 6 C 1.53190 * 109.31517 * 298.63463 * 5 4 2 7 7 N 1.46922 * 108.77726 * 54.63367 * 6 5 4 8 8 C 1.34776 * 120.63013 * 126.36713 * 7 6 5 9 9 O 1.21279 * 120.00380 * 174.86968 * 8 7 6 10 10 C 1.50698 * 120.00183 * 354.87120 * 8 7 6 11 11 C 1.52999 * 109.47656 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47638 * 179.97438 * 11 10 8 13 13 F 1.39903 * 109.46921 * 59.99830 * 12 11 10 14 14 F 1.39897 * 109.47368 * 180.02562 * 12 11 10 15 15 F 1.39901 * 109.47418 * 300.00302 * 12 11 10 16 16 C 1.46927 * 118.73970 * 306.64932 * 7 6 5 17 17 H 1.09001 * 109.57924 * 293.56328 * 16 7 6 18 18 C 1.52999 * 109.58618 * 173.14035 * 16 7 6 19 19 N 1.46498 * 109.47328 * 73.20087 * 18 16 7 20 20 C 1.36930 * 120.00360 * 174.77666 * 19 18 16 21 21 H 1.08002 * 120.00072 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00269 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00113 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00174 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47070 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47034 * 120.00050 * 24 22 20 27 27 H 1.48494 * 109.47495 * 240.00717 * 24 22 20 28 28 H 1.08996 * 109.47265 * 299.92189 * 1 2 3 29 29 H 1.08997 * 109.46844 * 59.92783 * 1 2 3 30 30 H 1.09010 * 109.46835 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.45789 * 61.29926 * 4 2 1 32 32 H 1.09003 * 109.45969 * 301.33961 * 4 2 1 33 33 H 1.09005 * 109.49968 * 178.68444 * 5 4 2 34 34 H 1.08997 * 109.50356 * 58.58718 * 5 4 2 35 35 H 1.08999 * 109.58805 * 294.84800 * 6 5 4 36 36 H 1.09003 * 109.58543 * 174.42888 * 6 5 4 37 37 H 1.09006 * 109.47517 * 59.99697 * 10 8 7 38 38 H 1.09004 * 109.47320 * 300.00305 * 10 8 7 39 39 H 1.08994 * 109.47324 * 300.00583 * 11 10 8 40 40 H 1.09010 * 109.46562 * 59.99947 * 11 10 8 41 41 H 1.09002 * 109.46806 * 193.20289 * 18 16 7 42 42 H 1.08996 * 109.47080 * 313.20138 * 18 16 7 43 43 H 0.97008 * 119.99868 * 354.78164 * 19 18 16 44 44 H 0.96996 * 119.99956 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 3.5708 -0.6950 1.2661 6 6 4.1053 -1.4267 0.0309 7 7 3.5047 -0.8292 -1.1695 8 6 4.2812 -0.3857 -2.1778 9 8 3.7729 0.0196 -3.2016 10 6 5.7812 -0.3934 -2.0331 11 6 6.4197 0.1558 -3.3104 12 6 7.9426 0.1486 -3.1633 13 9 8.3840 -1.1613 -2.9473 14 9 8.5263 0.6513 -4.3311 15 9 8.3100 0.9496 -2.0767 16 6 2.0416 -0.7188 -1.2471 17 1 1.6022 -1.7150 -1.2975 18 6 1.6529 0.0800 -2.4928 19 7 1.8675 -0.7417 -3.6865 20 6 1.4874 -0.2750 -4.9164 21 1 1.0298 0.6991 -5.0066 22 6 1.6912 -1.0534 -6.0475 23 7 2.2493 -2.2404 -5.9378 24 14 1.1734 -0.4164 -7.7255 25 1 0.5753 0.9349 -7.5790 26 1 2.3612 -0.3379 -8.6133 27 1 0.1725 -1.3395 -8.3182 28 1 -0.3633 0.5126 0.8906 29 1 -0.3633 0.5149 -0.8893 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6968 -1.7572 1.2354 32 1 1.6581 -0.2244 2.1390 33 1 3.9334 -1.1896 2.1672 34 1 3.9159 0.3389 1.2541 35 1 3.8376 -2.4818 0.0869 36 1 5.1896 -1.3246 -0.0135 37 1 6.1249 -1.4142 -1.8655 38 1 6.0678 0.2301 -1.1861 39 1 6.1332 -0.4679 -4.1571 40 1 6.0761 1.1766 -3.4784 41 1 0.6020 0.3623 -2.4301 42 1 2.2673 0.9782 -2.5548 43 1 2.2788 -1.6166 -3.6056 44 1 2.3921 -2.7841 -6.7282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698939494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:56 Heat of formation + Delta-G solvation = -175.709687 kcal Electronic energy + Delta-G solvation = -29456.467036 eV Core-core repulsion = 24994.189269 eV Total energy + Delta-G solvation = -4462.277767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 32.91 seconds Orbital eigenvalues (eV) -51.11366 -48.61935 -48.57482 -41.54732 -38.63424 -36.53962 -34.89109 -34.38738 -33.53651 -31.90833 -29.10958 -27.52437 -27.04273 -25.55279 -24.11669 -23.40708 -22.15686 -21.18773 -20.11525 -19.56631 -19.33550 -18.96960 -18.41993 -17.27492 -16.82426 -16.75882 -16.50155 -15.77322 -15.53428 -15.47586 -15.40266 -15.05348 -14.99179 -14.87469 -14.84384 -14.72964 -14.67361 -14.16408 -14.11554 -13.72259 -13.60924 -13.31486 -13.13254 -12.92542 -12.88643 -12.80130 -12.63247 -12.43730 -12.31628 -12.06008 -11.88931 -11.81987 -11.58827 -11.48025 -11.06094 -10.82536 -9.90645 -9.36116 -8.59183 -7.81414 -4.98765 1.44239 1.45790 1.54861 1.69899 1.96708 2.16758 2.62930 2.83971 3.02511 3.09038 3.51620 3.66712 3.79095 3.80673 3.97173 4.00353 4.06302 4.16859 4.32327 4.38385 4.46349 4.50666 4.61154 4.66627 4.70775 4.84041 4.85625 4.88796 4.91066 4.99616 5.09073 5.16140 5.27674 5.31996 5.34041 5.44019 5.54215 5.58660 5.87692 6.39819 6.68698 7.46237 7.58727 8.28417 8.51002 9.43458 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.007706 B = 0.006247 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3632.756963 B = 4480.897130 C = 7558.650492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.109 4.109 5 C -0.128 4.128 6 C 0.100 3.900 7 N -0.613 5.613 8 C 0.471 3.529 9 O -0.504 6.504 10 C -0.129 4.129 11 C -0.145 4.145 12 C 0.465 3.535 13 F -0.185 7.185 14 F -0.191 7.191 15 F -0.180 7.180 16 C 0.153 3.847 17 H 0.053 0.947 18 C 0.165 3.835 19 N -0.700 5.700 20 C -0.203 4.203 21 H 0.060 0.940 22 C -0.084 4.084 23 N -0.972 5.972 24 Si 0.961 3.039 25 H -0.272 1.272 26 H -0.300 1.300 27 H -0.295 1.295 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.367 0.633 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.252 3.535 19.945 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.147 4.147 5 C -0.166 4.166 6 C -0.022 4.022 7 N -0.349 5.349 8 C 0.258 3.742 9 O -0.377 6.377 10 C -0.169 4.169 11 C -0.184 4.184 12 C 0.411 3.589 13 F -0.166 7.166 14 F -0.173 7.173 15 F -0.161 7.161 16 C 0.050 3.950 17 H 0.071 0.929 18 C 0.039 3.961 19 N -0.340 5.340 20 C -0.337 4.337 21 H 0.078 0.922 22 C -0.275 4.275 23 N -0.626 5.626 24 Si 0.792 3.208 25 H -0.197 1.197 26 H -0.228 1.228 27 H -0.222 1.222 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.131 0.869 38 H 0.145 0.855 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.199 0.801 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.937 3.916 19.276 21.211 hybrid contribution 0.137 -0.175 -1.571 1.587 sum 8.074 3.742 17.706 19.816 Atomic orbital electron populations 1.21837 0.94090 1.02172 1.02140 1.21336 0.96321 0.99496 0.93883 0.91398 1.21569 0.95840 1.00718 0.96545 1.21909 0.95529 1.01437 0.97712 1.22001 0.99286 0.97318 0.83555 1.48040 1.05625 1.62094 1.19182 1.20933 0.89703 0.80140 0.83428 1.91243 1.73766 1.44531 1.28173 1.21593 0.91983 1.05181 0.98130 1.22480 0.86866 1.07119 1.01920 1.20411 0.92039 0.73229 0.73262 1.93177 1.91517 1.37321 1.94616 1.93175 1.86810 1.87617 1.49694 1.93173 1.93386 1.74032 1.55554 1.21230 0.80230 0.98359 0.95210 0.92915 1.20913 0.95584 0.94111 0.85506 1.42259 1.71576 1.18219 1.01939 1.19481 1.28453 0.99277 0.86439 0.92224 1.25283 1.04143 0.97575 1.00519 1.69815 1.52610 1.12154 1.28015 0.85212 0.76793 0.77467 0.81278 1.19715 1.22777 1.22222 0.90354 0.93748 0.92616 0.91701 0.89801 0.88111 0.91459 0.91266 0.87888 0.86901 0.85505 0.88704 0.87153 0.96478 0.96610 0.80144 0.94824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.99 71.98 0.65 -2.57 16 2 C -0.09 -2.09 2.32 -10.86 -0.03 -2.12 16 3 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.11 -1.75 5.17 30.62 0.16 -1.59 16 5 C -0.13 -1.73 6.08 30.67 0.19 -1.54 16 6 C 0.10 1.79 6.35 86.36 0.55 2.34 16 7 N -0.61 -17.42 2.98 -795.84 -2.37 -19.80 16 8 C 0.47 15.84 7.31 87.66 0.64 16.49 16 9 O -0.50 -23.10 9.71 -3.03 -0.03 -23.13 16 10 C -0.13 -3.06 3.81 29.85 0.11 -2.95 16 11 C -0.15 -3.92 4.55 30.59 0.14 -3.78 16 12 C 0.46 11.19 3.16 71.98 0.23 11.42 16 13 F -0.18 -4.51 16.80 44.97 0.76 -3.75 16 14 F -0.19 -5.18 17.32 44.97 0.78 -4.40 16 15 F -0.18 -3.94 16.80 44.97 0.76 -3.19 16 16 C 0.15 4.92 2.35 44.83 0.11 5.02 16 17 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.17 7.10 4.84 86.38 0.42 7.51 16 19 N -0.70 -37.76 3.19 -343.46 -1.10 -38.85 16 20 C -0.20 -12.21 9.73 84.03 0.82 -11.40 16 21 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 22 C -0.08 -5.18 5.50 84.86 0.47 -4.71 16 23 N -0.97 -62.86 13.06 21.65 0.28 -62.58 16 24 Si 0.96 49.74 29.55 68.60 2.03 51.77 16 25 H -0.27 -13.39 7.11 99.48 0.71 -12.69 16 26 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 27 H -0.29 -15.05 7.11 99.48 0.71 -14.35 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.17 6.36 -2.39 -0.02 1.15 16 30 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.10 1.38 5.93 -2.39 -0.01 1.37 16 37 H 0.11 2.31 7.39 -2.38 -0.02 2.30 16 38 H 0.13 2.19 7.56 -2.38 -0.02 2.17 16 39 H 0.09 3.14 8.10 -2.39 -0.02 3.12 16 40 H 0.11 3.08 8.10 -2.38 -0.02 3.06 16 41 H 0.02 0.75 6.12 -2.39 -0.01 0.74 16 42 H 0.02 0.75 6.37 -2.39 -0.02 0.74 16 43 H 0.37 21.33 7.22 -92.70 -0.67 20.66 16 44 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -75.28 353.45 5.90 -69.39 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.35 Total: 22.41 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 4.44 Total: 12.13 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -3.18 Total: -121.22 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.03 Total: -23.13 kcal Atomic # 9 Polarization: -13.63 SS G_CDS: 2.29 Total: -11.34 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.03 Total: 51.77 kcal Total: -75.28 5.90 -69.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698939494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.321 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 32.91 seconds