Wall clock time and date at job start Tue Mar 31 2020 16:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34784 * 120.62853 * 233.58870 * 5 4 2 7 7 O 1.21279 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46998 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47111 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47111 * 179.97438 * 10 9 8 12 12 F 1.39908 * 109.46826 * 59.99786 * 11 10 9 13 13 F 1.39900 * 109.47208 * 179.97438 * 11 10 9 14 14 F 1.39902 * 109.46907 * 300.00275 * 11 10 9 15 15 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 16 16 C 1.53193 * 108.77550 * 306.39057 * 15 5 4 17 17 C 1.53040 * 109.31153 * 54.63854 * 16 15 5 18 18 H 1.08997 * 109.46043 * 178.61049 * 17 16 15 19 19 N 1.46505 * 109.46056 * 58.64998 * 17 16 15 20 20 C 1.36946 * 119.99484 * 84.93338 * 19 17 16 21 21 H 1.07997 * 120.00087 * 0.02562 * 20 19 17 22 22 C 1.38805 * 119.99308 * 179.97438 * 20 19 17 23 23 N 1.31618 * 120.00858 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99517 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47219 * 90.00310 * 24 22 20 26 26 H 1.48501 * 109.47017 * 210.00255 * 24 22 20 27 27 H 1.48499 * 109.47275 * 330.00242 * 24 22 20 28 28 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 30 30 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 31 31 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 32 32 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 33 33 H 1.09001 * 109.47077 * 299.99541 * 8 6 5 34 34 H 1.08999 * 109.47395 * 60.00261 * 8 6 5 35 35 H 1.09007 * 109.46993 * 300.00268 * 9 8 6 36 36 H 1.09004 * 109.46672 * 59.99544 * 9 8 6 37 37 H 1.09001 * 109.47181 * 299.99870 * 10 9 8 38 38 H 1.08999 * 109.47177 * 60.00520 * 10 9 8 39 39 H 1.09004 * 109.58885 * 66.17987 * 15 5 4 40 40 H 1.09000 * 109.58663 * 186.46129 * 15 5 4 41 41 H 1.09005 * 109.49580 * 174.58602 * 16 15 5 42 42 H 1.08994 * 109.49562 * 294.64929 * 16 15 5 43 43 H 0.96999 * 120.00270 * 264.93201 * 19 17 16 44 44 H 0.96993 * 120.00505 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3849 -2.1790 7 8 3.7723 0.1055 -3.1648 8 6 5.7803 -0.4999 -2.0825 9 6 6.4182 0.0719 -3.3503 10 6 7.9406 -0.0443 -3.2521 11 6 8.5785 0.5269 -4.5202 12 9 8.2212 1.8728 -4.6563 13 9 9.9706 0.4213 -4.4302 14 9 8.1268 -0.1903 -5.6331 15 6 4.1059 -1.4256 0.0300 16 6 3.5715 -0.6942 1.2655 17 6 2.0414 -0.7230 1.2482 18 1 1.6588 -0.2247 2.1389 19 7 1.5796 -2.1132 1.2305 20 6 1.4500 -2.8065 2.4044 21 1 1.6879 -2.3284 3.3430 22 6 1.0119 -4.1235 2.3877 23 7 0.7215 -4.7062 1.2438 24 14 0.8345 -5.0691 3.9889 25 1 -0.5372 -4.8805 4.5258 26 1 1.0744 -6.5133 3.7401 27 1 1.8251 -4.5652 4.9738 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6057 -1.7214 -1.2982 32 1 1.7633 -0.1576 -2.1389 33 1 6.1324 0.0580 -1.2148 34 1 6.0583 -1.5486 -1.9776 35 1 6.0660 -0.4863 -4.2178 36 1 6.1401 1.1206 -3.4557 37 1 8.2924 0.5143 -2.3847 38 1 8.2189 -1.0928 -3.1466 39 1 3.8386 -2.4808 0.0860 40 1 5.1903 -1.3252 -0.0159 41 1 3.9345 -1.1888 2.1664 42 1 3.9166 0.3396 1.2538 43 1 1.3656 -2.5425 0.3875 44 1 0.4150 -5.6264 1.2322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753763513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:58 Heat of formation + Delta-G solvation = -199.294462 kcal Electronic energy + Delta-G solvation = -28056.550578 eV Core-core repulsion = 23593.250099 eV Total energy + Delta-G solvation = -4463.300479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -50.33057 -47.84364 -47.79410 -40.11919 -37.88315 -35.19548 -34.30917 -32.88532 -31.44507 -29.96189 -29.20241 -26.47770 -25.23089 -24.02955 -23.48166 -22.00071 -21.67231 -19.57572 -18.79527 -18.53950 -18.26482 -17.60496 -17.39003 -16.63588 -16.08630 -15.57677 -15.00087 -14.73719 -14.66784 -14.32488 -14.28937 -14.18662 -14.00559 -13.96807 -13.95092 -13.49482 -13.35151 -13.17133 -12.93402 -12.56979 -12.31924 -12.27605 -12.01840 -11.79117 -11.49622 -11.33312 -11.20634 -11.12924 -10.94647 -10.82704 -10.52543 -10.49508 -10.22738 -9.87611 -9.60650 -9.56998 -8.97555 -8.25604 -7.02352 -5.83421 -3.12128 2.50517 2.78759 3.19185 3.38187 3.43941 3.45501 3.56600 3.76714 3.78875 4.45699 4.53360 4.61448 4.76932 4.92683 5.05945 5.09319 5.17280 5.29400 5.33756 5.36578 5.49744 5.55403 5.69454 5.73195 5.77773 5.90342 5.92617 6.03879 6.05603 6.21775 6.27708 6.37185 6.47107 6.59715 6.64555 6.72731 6.89319 6.97255 7.64241 7.68840 8.35079 8.35311 9.46756 10.03317 10.38332 11.38917 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.002600 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.789412 B =10767.154794 C =11432.482646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.118 3.882 5 N -0.601 5.601 6 C 0.511 3.489 7 O -0.554 6.554 8 C -0.136 4.136 9 C -0.109 4.109 10 C -0.167 4.167 11 C 0.452 3.548 12 F -0.184 7.184 13 F -0.188 7.188 14 F -0.183 7.183 15 C 0.113 3.887 16 C -0.150 4.150 17 C 0.178 3.822 18 H 0.050 0.950 19 N -0.719 5.719 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.019 10.442 -7.260 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.299 3.701 7 O -0.433 6.433 8 C -0.176 4.176 9 C -0.147 4.147 10 C -0.205 4.205 11 C 0.398 3.602 12 F -0.165 7.165 13 F -0.169 7.169 14 F -0.164 7.164 15 C -0.010 4.010 16 C -0.191 4.191 17 C 0.068 3.932 18 H 0.068 0.932 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.746 10.623 -7.627 18.973 hybrid contribution 0.015 -0.757 0.620 0.978 sum 13.761 9.866 -7.007 18.325 Atomic orbital electron populations 1.21668 0.94252 1.03187 1.00436 1.21699 0.96506 0.98802 0.95791 0.91696 1.21644 0.78665 1.01530 0.98549 1.48145 1.07205 1.59679 1.18235 1.20460 0.89143 0.77826 0.82645 1.90673 1.75619 1.45716 1.31283 1.21605 0.92887 1.03728 0.99413 1.21342 0.90342 1.04007 0.99019 1.22931 0.98473 1.04911 0.94212 1.20620 0.76406 0.76246 0.86947 1.93193 1.91569 1.35213 1.96530 1.93185 1.31397 1.95903 1.96444 1.93196 1.88832 1.77934 1.56472 1.21750 0.96328 0.99118 0.83786 1.22523 1.00557 0.98589 0.97457 1.20210 0.90771 0.87362 0.94855 0.93167 1.42486 1.79009 1.07683 1.06953 1.19211 1.37301 0.93837 0.86566 0.91265 1.24706 1.02242 0.97208 0.96600 1.69642 1.51617 1.13115 1.23670 0.86240 0.77783 0.79372 0.83054 1.21818 1.21885 1.20843 0.91043 0.92821 0.93767 0.90695 0.89834 0.88582 0.88485 0.89707 0.89786 0.87134 0.87076 0.89659 0.91173 0.90735 0.93326 0.78089 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.06 37.16 0.34 -1.83 16 2 C -0.11 -1.71 2.67 -90.50 -0.24 -1.95 16 3 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.94 5.42 -3.71 -0.02 1.92 16 5 N -0.60 -9.03 2.97 -172.77 -0.51 -9.55 16 6 C 0.51 7.37 7.70 -10.98 -0.08 7.29 16 7 O -0.55 -9.80 15.40 5.56 0.09 -9.72 16 8 C -0.14 -1.31 4.05 -27.88 -0.11 -1.42 16 9 C -0.11 -1.00 4.26 -26.73 -0.11 -1.12 16 10 C -0.17 -1.10 5.26 -26.73 -0.14 -1.24 16 11 C 0.45 3.96 3.16 37.16 0.12 4.08 16 12 F -0.18 -1.85 16.80 2.25 0.04 -1.81 16 13 F -0.19 -1.72 17.32 2.25 0.04 -1.68 16 14 F -0.18 -1.88 16.80 2.25 0.04 -1.84 16 15 C 0.11 1.62 6.08 -3.71 -0.02 1.59 16 16 C -0.15 -2.29 5.78 -26.61 -0.15 -2.45 16 17 C 0.18 3.18 2.53 -67.89 -0.17 3.01 16 18 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 19 N -0.72 -15.98 3.64 -53.38 -0.19 -16.18 16 20 C -0.24 -6.04 9.93 -15.06 -0.15 -6.19 16 21 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -26.57 13.06 55.49 0.72 -25.84 16 24 Si 0.90 21.34 29.55 -169.99 -5.02 16.31 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.07 1.31 7.54 -51.93 -0.39 0.92 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.37 6.64 -51.93 -0.34 1.03 16 32 H 0.08 1.39 7.01 -51.93 -0.36 1.03 16 33 H 0.10 0.74 7.69 -51.93 -0.40 0.34 16 34 H 0.10 0.79 7.94 -51.93 -0.41 0.38 16 35 H 0.08 0.90 7.76 -51.93 -0.40 0.50 16 36 H 0.08 0.87 7.76 -51.93 -0.40 0.46 16 37 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.48 7.74 -51.93 -0.40 1.08 16 40 H 0.07 0.77 5.93 -51.93 -0.31 0.46 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.38 9.21 5.92 -40.82 -0.24 8.96 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -29.83 361.38 -6.81 -36.64 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.59 Total: 6.93 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.85 Total: 1.29 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.02 Total: -51.57 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.11 Total: -5.33 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.83 -6.81 -36.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753763513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.659 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds