Wall clock time and date at job start Tue Mar 31 2020 16:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34784 * 120.62853 * 233.58870 * 5 4 2 7 7 O 1.21279 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46998 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47111 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47111 * 179.97438 * 10 9 8 12 12 F 1.39908 * 109.46826 * 59.99786 * 11 10 9 13 13 F 1.39900 * 109.47208 * 179.97438 * 11 10 9 14 14 F 1.39902 * 109.46907 * 300.00275 * 11 10 9 15 15 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 16 16 C 1.53193 * 108.77550 * 306.39057 * 15 5 4 17 17 C 1.53040 * 109.31153 * 54.63854 * 16 15 5 18 18 H 1.08997 * 109.46043 * 178.61049 * 17 16 15 19 19 N 1.46505 * 109.46056 * 58.64998 * 17 16 15 20 20 C 1.36946 * 119.99484 * 84.93338 * 19 17 16 21 21 H 1.07997 * 120.00087 * 0.02562 * 20 19 17 22 22 C 1.38805 * 119.99308 * 179.97438 * 20 19 17 23 23 N 1.31618 * 120.00858 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99517 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47219 * 90.00310 * 24 22 20 26 26 H 1.48501 * 109.47017 * 210.00255 * 24 22 20 27 27 H 1.48499 * 109.47275 * 330.00242 * 24 22 20 28 28 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 30 30 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 31 31 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 32 32 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 33 33 H 1.09001 * 109.47077 * 299.99541 * 8 6 5 34 34 H 1.08999 * 109.47395 * 60.00261 * 8 6 5 35 35 H 1.09007 * 109.46993 * 300.00268 * 9 8 6 36 36 H 1.09004 * 109.46672 * 59.99544 * 9 8 6 37 37 H 1.09001 * 109.47181 * 299.99870 * 10 9 8 38 38 H 1.08999 * 109.47177 * 60.00520 * 10 9 8 39 39 H 1.09004 * 109.58885 * 66.17987 * 15 5 4 40 40 H 1.09000 * 109.58663 * 186.46129 * 15 5 4 41 41 H 1.09005 * 109.49580 * 174.58602 * 16 15 5 42 42 H 1.08994 * 109.49562 * 294.64929 * 16 15 5 43 43 H 0.96999 * 120.00270 * 264.93201 * 19 17 16 44 44 H 0.96993 * 120.00505 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3849 -2.1790 7 8 3.7723 0.1055 -3.1648 8 6 5.7803 -0.4999 -2.0825 9 6 6.4182 0.0719 -3.3503 10 6 7.9406 -0.0443 -3.2521 11 6 8.5785 0.5269 -4.5202 12 9 8.2212 1.8728 -4.6563 13 9 9.9706 0.4213 -4.4302 14 9 8.1268 -0.1903 -5.6331 15 6 4.1059 -1.4256 0.0300 16 6 3.5715 -0.6942 1.2655 17 6 2.0414 -0.7230 1.2482 18 1 1.6588 -0.2247 2.1389 19 7 1.5796 -2.1132 1.2305 20 6 1.4500 -2.8065 2.4044 21 1 1.6879 -2.3284 3.3430 22 6 1.0119 -4.1235 2.3877 23 7 0.7215 -4.7062 1.2438 24 14 0.8345 -5.0691 3.9889 25 1 -0.5372 -4.8805 4.5258 26 1 1.0744 -6.5133 3.7401 27 1 1.8251 -4.5652 4.9738 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6057 -1.7214 -1.2982 32 1 1.7633 -0.1576 -2.1389 33 1 6.1324 0.0580 -1.2148 34 1 6.0583 -1.5486 -1.9776 35 1 6.0660 -0.4863 -4.2178 36 1 6.1401 1.1206 -3.4557 37 1 8.2924 0.5143 -2.3847 38 1 8.2189 -1.0928 -3.1466 39 1 3.8386 -2.4808 0.0860 40 1 5.1903 -1.3252 -0.0159 41 1 3.9345 -1.1888 2.1664 42 1 3.9166 0.3396 1.2538 43 1 1.3656 -2.5425 0.3875 44 1 0.4150 -5.6264 1.2322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753763513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:56 Heat of formation + Delta-G solvation = -216.016719 kcal Electronic energy + Delta-G solvation = -28057.275710 eV Core-core repulsion = 23593.250099 eV Total energy + Delta-G solvation = -4464.025611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.02 seconds Orbital eigenvalues (eV) -51.03439 -48.54349 -48.52877 -41.32017 -39.18374 -35.95268 -35.81756 -34.43364 -32.95054 -30.91555 -30.69446 -27.68090 -26.58595 -25.35773 -24.80853 -23.02023 -22.67125 -20.73530 -19.59873 -19.49150 -19.27423 -19.14794 -18.47473 -17.70627 -16.99313 -16.74549 -16.48324 -15.89347 -15.77666 -15.50936 -15.44759 -15.14979 -14.95717 -14.81016 -14.72035 -14.69181 -14.65244 -14.29602 -14.15824 -13.67180 -13.58208 -13.09263 -12.97034 -12.90130 -12.82629 -12.81328 -12.63466 -12.40214 -12.23598 -12.09042 -11.92851 -11.85085 -11.79424 -11.55278 -11.12879 -10.89388 -10.70216 -9.53805 -8.89798 -7.86927 -5.12922 1.50808 1.51999 1.59330 1.68290 1.84457 2.11705 2.61460 2.92282 3.08245 3.16560 3.47108 3.57172 3.87109 3.90650 4.00021 4.04571 4.12120 4.14718 4.24223 4.37244 4.44221 4.50337 4.55262 4.63431 4.70708 4.73684 4.75245 4.88037 5.01063 5.04339 5.07695 5.16206 5.21999 5.27935 5.33150 5.36321 5.50099 5.62905 5.69497 6.35085 6.54609 7.21849 7.42577 8.19595 8.42543 9.36397 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.002600 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.789412 B =10767.154794 C =11432.482646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 H 0.085 0.915 4 C 0.123 3.877 5 N -0.603 5.603 6 C 0.505 3.495 7 O -0.592 6.592 8 C -0.129 4.129 9 C -0.106 4.106 10 C -0.155 4.155 11 C 0.447 3.553 12 F -0.194 7.194 13 F -0.190 7.190 14 F -0.196 7.196 15 C 0.118 3.882 16 C -0.143 4.143 17 C 0.171 3.829 18 H 0.045 0.955 19 N -0.725 5.725 20 C -0.223 4.223 21 H 0.076 0.924 22 C -0.074 4.074 23 N -0.970 5.970 24 Si 0.962 3.038 25 H -0.295 1.295 26 H -0.302 1.302 27 H -0.268 1.268 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.050 0.950 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.373 0.627 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.295 11.768 -5.973 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.117 4.117 3 H 0.104 0.896 4 C 0.000 4.000 5 N -0.335 5.335 6 C 0.296 3.704 7 O -0.474 6.474 8 C -0.168 4.168 9 C -0.144 4.144 10 C -0.193 4.193 11 C 0.393 3.607 12 F -0.176 7.176 13 F -0.171 7.171 14 F -0.177 7.177 15 C -0.004 4.004 16 C -0.183 4.183 17 C 0.062 3.938 18 H 0.063 0.937 19 N -0.367 5.367 20 C -0.356 4.356 21 H 0.094 0.906 22 C -0.266 4.266 23 N -0.621 5.621 24 Si 0.793 3.207 25 H -0.223 1.223 26 H -0.229 1.229 27 H -0.193 1.193 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.068 0.932 40 H 0.134 0.866 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.206 0.794 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.059 11.998 -6.311 21.016 hybrid contribution -0.702 -1.056 0.159 1.279 sum 15.356 10.942 -6.151 19.834 Atomic orbital electron populations 1.21611 0.94466 1.01362 1.01644 1.21615 0.96319 0.99336 0.94463 0.89626 1.21424 0.80169 0.99832 0.98605 1.48213 1.06499 1.59844 1.18896 1.21375 0.91141 0.76476 0.81457 1.90661 1.76778 1.47319 1.32616 1.21678 0.88713 1.05691 1.00730 1.21239 0.92244 1.02727 0.98194 1.22937 0.96036 1.06634 0.93682 1.21035 0.76429 0.75790 0.87469 1.93173 1.91653 1.36127 1.96624 1.93180 1.31614 1.95871 1.96440 1.93173 1.88974 1.78151 1.57447 1.21736 0.98830 0.96823 0.83034 1.22391 0.97848 1.00474 0.97608 1.20460 0.92827 0.85001 0.95513 0.93716 1.42610 1.79186 1.09304 1.05559 1.19564 1.34540 0.93743 0.87718 0.90636 1.25377 1.03718 0.98515 0.99020 1.69798 1.53971 1.12873 1.25502 0.85293 0.77555 0.77559 0.80267 1.22325 1.22942 1.19292 0.94297 0.92235 0.91937 0.93586 0.90352 0.85269 0.86277 0.91806 0.91225 0.84377 0.84856 0.93171 0.86606 0.91363 0.90296 0.79375 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.06 71.98 0.65 -3.51 16 2 C -0.10 -2.98 2.67 -10.72 -0.03 -3.01 16 3 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.12 4.03 5.42 86.36 0.47 4.50 16 5 N -0.60 -17.17 2.97 -818.91 -2.43 -19.60 16 6 C 0.50 13.58 7.70 87.65 0.67 14.26 16 7 O -0.59 -20.65 15.40 -3.03 -0.05 -20.70 16 8 C -0.13 -1.98 4.05 29.85 0.12 -1.85 16 9 C -0.11 -1.69 4.26 30.59 0.13 -1.56 16 10 C -0.16 -1.50 5.26 30.59 0.16 -1.34 16 11 C 0.45 7.01 3.16 71.98 0.23 7.23 16 12 F -0.19 -3.67 16.80 44.97 0.76 -2.91 16 13 F -0.19 -3.08 17.32 44.97 0.78 -2.30 16 14 F -0.20 -3.85 16.80 44.97 0.76 -3.09 16 15 C 0.12 3.08 6.08 86.36 0.53 3.61 16 16 C -0.14 -3.95 5.78 30.67 0.18 -3.77 16 17 C 0.17 5.87 2.53 45.02 0.11 5.98 16 18 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 19 N -0.73 -32.49 3.64 -322.81 -1.18 -33.66 16 20 C -0.22 -11.32 9.93 84.03 0.83 -10.49 16 21 H 0.08 3.67 7.83 -2.91 -0.02 3.65 16 22 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 23 N -0.97 -56.90 13.06 21.65 0.28 -56.62 16 24 Si 0.96 44.24 29.55 68.60 2.03 46.27 16 25 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 26 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 H 0.04 1.46 7.54 -2.39 -0.02 1.44 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.77 6.64 -2.39 -0.02 1.75 16 32 H 0.08 2.64 7.01 -2.38 -0.02 2.62 16 33 H 0.13 1.21 7.69 -2.39 -0.02 1.19 16 34 H 0.12 1.39 7.94 -2.39 -0.02 1.37 16 35 H 0.06 1.29 7.76 -2.38 -0.02 1.27 16 36 H 0.07 1.32 7.76 -2.38 -0.02 1.30 16 37 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.05 1.70 7.74 -2.38 -0.02 1.68 16 40 H 0.12 1.97 5.93 -2.39 -0.01 1.96 16 41 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.37 18.48 5.92 -92.71 -0.55 17.93 16 44 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -67.30 361.38 5.93 -61.36 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.47 Total: 24.76 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 4.52 Total: 6.49 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -3.33 Total: -109.88 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.05 Total: -20.70 kcal Atomic # 9 Polarization: -10.59 SS G_CDS: 2.29 Total: -8.30 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -67.30 5.93 -61.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753763513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.652 kcal (2) G-P(sol) polarization free energy of solvation -67.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.02 seconds