Wall clock time and date at job start Tue Mar 31 2020 16:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 109.52745 * 2 1 4 4 C 1.53195 * 109.49663 * 120.08486 * 2 1 3 5 5 N 1.46923 * 108.77776 * 174.58817 * 4 2 1 6 6 C 1.34770 * 120.63141 * 126.40957 * 5 4 2 7 7 O 1.21283 * 120.00270 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99673 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.46662 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46776 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47011 * 179.97438 * 10 9 8 12 12 F 1.39902 * 109.46809 * 60.00061 * 11 10 9 13 13 F 1.39901 * 109.46870 * 180.02562 * 11 10 9 14 14 F 1.39900 * 109.46813 * 300.00257 * 11 10 9 15 15 C 1.46927 * 118.73554 * 306.38601 * 5 4 2 16 16 C 1.53196 * 108.77413 * 53.60901 * 15 5 4 17 17 C 1.53031 * 109.31477 * 305.36304 * 16 15 5 18 18 H 1.08995 * 109.46212 * 301.34533 * 17 16 15 19 19 N 1.46502 * 109.46052 * 181.38564 * 17 16 15 20 20 C 1.36936 * 120.00093 * 84.93628 * 19 17 16 21 21 H 1.08003 * 119.99769 * 359.97438 * 20 19 17 22 22 C 1.38814 * 120.00121 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99850 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47017 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47029 * 119.99845 * 24 22 20 27 27 H 1.48499 * 109.47143 * 240.00138 * 24 22 20 28 28 H 1.09003 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47538 * 300.08299 * 1 2 3 30 30 H 1.09004 * 109.47024 * 60.08285 * 1 2 3 31 31 H 1.09009 * 109.58115 * 294.37266 * 4 2 1 32 32 H 1.08995 * 109.58619 * 54.79427 * 4 2 1 33 33 H 1.08996 * 109.47108 * 299.99497 * 8 6 5 34 34 H 1.08998 * 109.47155 * 60.00384 * 8 6 5 35 35 H 1.09002 * 109.47104 * 299.99832 * 9 8 6 36 36 H 1.09003 * 109.47460 * 59.99873 * 9 8 6 37 37 H 1.08995 * 109.47215 * 300.00268 * 10 9 8 38 38 H 1.08998 * 109.46914 * 60.00299 * 10 9 8 39 39 H 1.08993 * 109.58956 * 293.82344 * 15 5 4 40 40 H 1.08999 * 109.70338 * 173.46710 * 15 5 4 41 41 H 1.09004 * 109.49841 * 185.40709 * 16 15 5 42 42 H 1.09000 * 109.49679 * 65.31895 * 16 15 5 43 43 H 0.97004 * 119.99811 * 264.92896 * 19 17 16 44 44 H 0.97000 * 119.99814 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5045 -0.8292 1.1696 6 6 4.2809 -0.3865 2.1783 7 8 3.7730 0.1049 3.1640 8 6 5.7805 -0.5022 2.0816 9 6 6.4188 0.0692 3.3492 10 6 7.9412 -0.0488 3.2513 11 6 8.5796 0.5231 4.5187 12 9 8.1271 -0.1925 5.6325 13 9 9.9716 0.4158 4.4289 14 9 8.2238 1.8694 4.6533 15 6 4.1052 -1.4268 -0.0307 16 6 3.5708 -0.6951 -1.2660 17 6 2.0408 -0.7232 -1.2484 18 1 1.6967 -1.7573 -1.2353 19 7 1.5266 -0.0530 -2.4453 20 6 1.3964 -0.7492 -3.6173 21 1 1.6732 -1.7923 -3.6592 22 6 0.9096 -0.1141 -4.7516 23 7 0.5728 1.1572 -4.7005 24 14 0.7328 -1.0637 -6.3504 25 1 1.1757 -2.4662 -6.1447 26 1 -0.6892 -1.0519 -6.7784 27 1 1.5706 -0.4282 -7.3988 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5151 0.8892 30 1 -0.3633 0.5126 -0.8908 31 1 1.7637 -0.1580 2.1389 32 1 1.6051 -1.7216 1.2980 33 1 6.0580 -1.5510 1.9765 34 1 6.1326 0.0557 1.2139 35 1 6.1413 1.1180 3.4548 36 1 6.0666 -0.4890 4.2168 37 1 8.2183 -1.0977 3.1459 38 1 8.2937 0.5091 2.3838 39 1 3.8374 -2.4819 -0.0867 40 1 5.1897 -1.3269 0.0125 41 1 3.9334 -1.1897 -2.1671 42 1 3.9159 0.3387 -1.2540 43 1 1.2782 0.8840 -2.4076 44 1 0.2330 1.6011 -5.4932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753763514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:03 Heat of formation + Delta-G solvation = -201.641464 kcal Electronic energy + Delta-G solvation = -27645.810808 eV Core-core repulsion = 23182.408555 eV Total energy + Delta-G solvation = -4463.402253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 4.18 seconds Orbital eigenvalues (eV) -50.38062 -47.89266 -47.84507 -40.23117 -37.85157 -35.29701 -34.66587 -32.91798 -31.52578 -30.09759 -29.30512 -26.59863 -25.23524 -24.21741 -22.82976 -22.06327 -21.66450 -19.89580 -19.00440 -18.84574 -18.54319 -17.76229 -17.13535 -16.82894 -16.18031 -15.74826 -15.00441 -14.96716 -14.77885 -14.39017 -14.26202 -14.17552 -14.02153 -14.00253 -13.80896 -13.69001 -13.38465 -13.24467 -13.04576 -12.57678 -12.42667 -12.23899 -12.10836 -11.89907 -11.62103 -11.60138 -11.22579 -11.18677 -10.98944 -10.85565 -10.68142 -10.44812 -10.20477 -9.83017 -9.72934 -9.66313 -8.95654 -8.52166 -7.01382 -5.82297 -3.11161 2.44635 2.62018 3.01314 3.38436 3.44088 3.46551 3.49947 3.69430 3.73296 4.33217 4.52857 4.53978 4.66756 4.80589 4.95334 5.00052 5.04237 5.21554 5.23700 5.27297 5.31185 5.48367 5.56560 5.63196 5.65005 5.75362 5.83420 5.92874 6.04343 6.10378 6.24998 6.33977 6.39409 6.48651 6.58690 6.76280 6.88309 7.00314 7.46605 7.64281 8.17853 8.35884 9.47418 10.04779 10.39468 11.40206 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.002328 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.425938 B =12024.443278 C =12664.843421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.119 3.881 5 N -0.606 5.606 6 C 0.513 3.487 7 O -0.549 6.549 8 C -0.137 4.137 9 C -0.110 4.110 10 C -0.167 4.167 11 C 0.452 3.548 12 F -0.184 7.184 13 F -0.187 7.187 14 F -0.183 7.183 15 C 0.106 3.894 16 C -0.153 4.153 17 C 0.184 3.816 18 H 0.048 0.952 19 N -0.721 5.721 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.498 -4.638 16.332 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.003 4.003 5 N -0.339 5.339 6 C 0.301 3.699 7 O -0.427 6.427 8 C -0.177 4.177 9 C -0.148 4.148 10 C -0.205 4.205 11 C 0.398 3.602 12 F -0.165 7.165 13 F -0.169 7.169 14 F -0.164 7.164 15 C -0.017 4.017 16 C -0.194 4.194 17 C 0.073 3.927 18 H 0.066 0.934 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.213 -4.497 16.722 22.403 hybrid contribution 0.041 -0.091 -0.975 0.980 sum 14.254 -4.588 15.748 21.730 Atomic orbital electron populations 1.21661 0.94120 1.01762 1.01877 1.21741 0.96604 1.00025 0.94612 0.91285 1.21711 0.78483 1.00777 0.99352 1.48182 1.07266 1.60289 1.18135 1.20499 0.89203 0.77635 0.82535 1.90690 1.75625 1.45087 1.31309 1.21619 0.92685 1.03653 0.99749 1.21348 0.90443 1.04168 0.98821 1.22928 0.98385 1.04859 0.94365 1.20607 0.76444 0.76312 0.86855 1.93192 1.88815 1.78037 1.56461 1.93189 1.31375 1.95889 1.96436 1.93199 1.91593 1.35091 1.96523 1.21883 0.97596 0.97436 0.84802 1.22696 1.00483 1.00401 0.95820 1.20188 0.90330 0.95693 0.86443 0.93446 1.42422 1.76474 1.11444 1.05763 1.19250 1.35890 0.94110 0.87662 0.91192 1.24738 1.02059 0.96025 0.98083 1.69669 1.50001 1.09489 1.28811 0.86156 0.77347 0.78846 0.84046 1.20592 1.21903 1.21928 0.93058 0.93806 0.90750 0.89386 0.91641 0.88544 0.88310 0.89648 0.89745 0.87123 0.87036 0.91428 0.90432 0.90539 0.92171 0.78216 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.03 37.16 0.34 -1.83 16 2 C -0.11 -1.74 2.46 -90.50 -0.22 -1.97 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.12 1.66 5.72 -3.71 -0.02 1.64 16 5 N -0.61 -7.76 2.97 -172.77 -0.51 -8.27 16 6 C 0.51 6.53 7.70 -10.98 -0.08 6.45 16 7 O -0.55 -8.92 15.39 5.55 0.09 -8.83 16 8 C -0.14 -1.11 4.05 -27.88 -0.11 -1.23 16 9 C -0.11 -0.89 4.26 -26.73 -0.11 -1.01 16 10 C -0.17 -0.96 5.26 -26.72 -0.14 -1.10 16 11 C 0.45 3.68 3.16 37.16 0.12 3.79 16 12 F -0.18 -1.73 16.80 2.25 0.04 -1.69 16 13 F -0.19 -1.61 17.32 2.25 0.04 -1.57 16 14 F -0.18 -1.78 16.80 2.25 0.04 -1.74 16 15 C 0.11 1.21 6.34 -3.71 -0.02 1.18 16 16 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 17 C 0.18 3.31 2.19 -67.89 -0.15 3.16 16 18 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 19 N -0.72 -16.77 4.41 -53.39 -0.24 -17.00 16 20 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 21 H 0.07 1.78 7.83 -52.48 -0.41 1.36 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 24 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.39 7.36 -51.93 -0.38 1.01 16 31 H 0.09 1.29 7.01 -51.92 -0.36 0.93 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.57 7.94 -51.93 -0.41 0.16 16 34 H 0.10 0.68 7.69 -51.93 -0.40 0.28 16 35 H 0.08 0.83 7.76 -51.93 -0.40 0.43 16 36 H 0.08 0.78 7.76 -51.93 -0.40 0.37 16 37 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.66 5.95 -51.93 -0.31 0.35 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.38 9.72 7.50 -40.82 -0.31 9.41 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -31.08 365.32 -6.90 -37.98 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.75 Total: 5.74 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -0.81 Total: -0.22 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.02 Total: -51.77 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.11 Total: -5.00 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.08 -6.90 -37.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753763514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.662 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.18 seconds