Wall clock time and date at job start Tue Mar 31 2020 16:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 109.52745 * 2 1 4 4 C 1.53195 * 109.49663 * 120.08486 * 2 1 3 5 5 N 1.46923 * 108.77776 * 174.58817 * 4 2 1 6 6 C 1.34770 * 120.63141 * 126.40957 * 5 4 2 7 7 O 1.21283 * 120.00270 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99673 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.46662 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46776 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47011 * 179.97438 * 10 9 8 12 12 F 1.39902 * 109.46809 * 60.00061 * 11 10 9 13 13 F 1.39901 * 109.46870 * 180.02562 * 11 10 9 14 14 F 1.39900 * 109.46813 * 300.00257 * 11 10 9 15 15 C 1.46927 * 118.73554 * 306.38601 * 5 4 2 16 16 C 1.53196 * 108.77413 * 53.60901 * 15 5 4 17 17 C 1.53031 * 109.31477 * 305.36304 * 16 15 5 18 18 H 1.08995 * 109.46212 * 301.34533 * 17 16 15 19 19 N 1.46502 * 109.46052 * 181.38564 * 17 16 15 20 20 C 1.36936 * 120.00093 * 84.93628 * 19 17 16 21 21 H 1.08003 * 119.99769 * 359.97438 * 20 19 17 22 22 C 1.38814 * 120.00121 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99850 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47017 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47029 * 119.99845 * 24 22 20 27 27 H 1.48499 * 109.47143 * 240.00138 * 24 22 20 28 28 H 1.09003 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47538 * 300.08299 * 1 2 3 30 30 H 1.09004 * 109.47024 * 60.08285 * 1 2 3 31 31 H 1.09009 * 109.58115 * 294.37266 * 4 2 1 32 32 H 1.08995 * 109.58619 * 54.79427 * 4 2 1 33 33 H 1.08996 * 109.47108 * 299.99497 * 8 6 5 34 34 H 1.08998 * 109.47155 * 60.00384 * 8 6 5 35 35 H 1.09002 * 109.47104 * 299.99832 * 9 8 6 36 36 H 1.09003 * 109.47460 * 59.99873 * 9 8 6 37 37 H 1.08995 * 109.47215 * 300.00268 * 10 9 8 38 38 H 1.08998 * 109.46914 * 60.00299 * 10 9 8 39 39 H 1.08993 * 109.58956 * 293.82344 * 15 5 4 40 40 H 1.08999 * 109.70338 * 173.46710 * 15 5 4 41 41 H 1.09004 * 109.49841 * 185.40709 * 16 15 5 42 42 H 1.09000 * 109.49679 * 65.31895 * 16 15 5 43 43 H 0.97004 * 119.99811 * 264.92896 * 19 17 16 44 44 H 0.97000 * 119.99814 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5045 -0.8292 1.1696 6 6 4.2809 -0.3865 2.1783 7 8 3.7730 0.1049 3.1640 8 6 5.7805 -0.5022 2.0816 9 6 6.4188 0.0692 3.3492 10 6 7.9412 -0.0488 3.2513 11 6 8.5796 0.5231 4.5187 12 9 8.1271 -0.1925 5.6325 13 9 9.9716 0.4158 4.4289 14 9 8.2238 1.8694 4.6533 15 6 4.1052 -1.4268 -0.0307 16 6 3.5708 -0.6951 -1.2660 17 6 2.0408 -0.7232 -1.2484 18 1 1.6967 -1.7573 -1.2353 19 7 1.5266 -0.0530 -2.4453 20 6 1.3964 -0.7492 -3.6173 21 1 1.6732 -1.7923 -3.6592 22 6 0.9096 -0.1141 -4.7516 23 7 0.5728 1.1572 -4.7005 24 14 0.7328 -1.0637 -6.3504 25 1 1.1757 -2.4662 -6.1447 26 1 -0.6892 -1.0519 -6.7784 27 1 1.5706 -0.4282 -7.3988 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5151 0.8892 30 1 -0.3633 0.5126 -0.8908 31 1 1.7637 -0.1580 2.1389 32 1 1.6051 -1.7216 1.2980 33 1 6.0580 -1.5510 1.9765 34 1 6.1326 0.0557 1.2139 35 1 6.1413 1.1180 3.4548 36 1 6.0666 -0.4890 4.2168 37 1 8.2183 -1.0977 3.1459 38 1 8.2937 0.5091 2.3838 39 1 3.8374 -2.4819 -0.0867 40 1 5.1897 -1.3269 0.0125 41 1 3.9334 -1.1897 -2.1671 42 1 3.9159 0.3387 -1.2540 43 1 1.2782 0.8840 -2.4076 44 1 0.2330 1.6011 -5.4932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753763514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:02 Heat of formation + Delta-G solvation = -219.988042 kcal Electronic energy + Delta-G solvation = -27646.606375 eV Core-core repulsion = 23182.408555 eV Total energy + Delta-G solvation = -4464.197820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.03582 -48.54477 -48.53246 -41.27818 -39.08830 -36.16622 -35.92824 -34.42423 -33.02560 -31.09276 -30.61927 -27.70408 -26.71589 -25.23113 -24.17651 -23.05176 -22.64805 -21.16943 -20.02894 -19.49384 -19.21715 -19.02280 -18.50353 -17.75387 -16.92786 -16.77744 -16.70637 -15.80407 -15.67668 -15.45363 -15.44962 -15.12016 -14.96555 -14.93007 -14.73389 -14.69494 -14.67209 -14.29322 -13.96586 -13.76515 -13.50454 -13.11746 -13.05636 -12.89301 -12.87532 -12.82170 -12.71523 -12.43294 -12.27150 -12.07054 -11.99899 -11.82945 -11.79489 -11.64111 -11.12682 -10.92628 -10.71811 -9.61172 -8.94525 -7.90008 -5.17300 1.49403 1.50170 1.59403 1.66879 1.84544 2.10014 2.59148 2.92487 3.08103 3.16491 3.43729 3.56170 3.81725 3.85102 4.00129 4.04615 4.07233 4.14948 4.24912 4.36537 4.44296 4.50249 4.54106 4.61449 4.69109 4.72451 4.82127 4.84968 4.88134 5.02371 5.03610 5.06178 5.20729 5.24278 5.35720 5.42019 5.54108 5.59429 5.68164 6.31715 6.49354 7.21026 7.38110 8.14947 8.37447 9.33896 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.002328 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.425938 B =12024.443278 C =12664.843421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 H 0.050 0.950 4 C 0.126 3.874 5 N -0.609 5.609 6 C 0.506 3.494 7 O -0.591 6.591 8 C -0.130 4.130 9 C -0.108 4.108 10 C -0.155 4.155 11 C 0.445 3.555 12 F -0.194 7.194 13 F -0.190 7.190 14 F -0.196 7.196 15 C 0.114 3.886 16 C -0.145 4.145 17 C 0.178 3.822 18 H 0.047 0.953 19 N -0.733 5.733 20 C -0.226 4.226 21 H 0.079 0.921 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.967 3.033 25 H -0.263 1.263 26 H -0.300 1.300 27 H -0.298 1.298 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.369 0.631 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.564 -6.960 16.575 24.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 H 0.069 0.931 4 C 0.003 3.997 5 N -0.341 5.341 6 C 0.297 3.703 7 O -0.472 6.472 8 C -0.169 4.169 9 C -0.146 4.146 10 C -0.193 4.193 11 C 0.392 3.608 12 F -0.176 7.176 13 F -0.172 7.172 14 F -0.178 7.178 15 C -0.008 4.008 16 C -0.185 4.185 17 C 0.069 3.931 18 H 0.065 0.935 19 N -0.372 5.372 20 C -0.358 4.358 21 H 0.097 0.903 22 C -0.271 4.271 23 N -0.624 5.624 24 Si 0.797 3.203 25 H -0.187 1.187 26 H -0.228 1.228 27 H -0.225 1.225 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.201 0.799 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.321 -6.874 16.994 24.544 hybrid contribution -0.608 0.637 -0.931 1.282 sum 15.713 -6.237 16.063 23.320 Atomic orbital electron populations 1.21584 0.94337 1.01939 1.01041 1.21603 0.96433 0.99056 0.94891 0.93111 1.21526 0.79881 1.00976 0.97360 1.48280 1.06685 1.60360 1.18782 1.21369 0.91110 0.76267 0.81587 1.90679 1.76770 1.46772 1.32997 1.21698 0.88735 1.06222 1.00282 1.21252 0.92233 1.02543 0.98544 1.22943 0.96089 1.06794 0.93443 1.21074 0.76444 0.75757 0.87559 1.93171 1.88921 1.78158 1.57333 1.93181 1.31685 1.95849 1.96447 1.93173 1.91703 1.36296 1.96642 1.21955 0.99688 0.97353 0.81847 1.22485 0.97886 1.00269 0.97904 1.20450 0.92221 0.95156 0.85224 0.93498 1.42628 1.76936 1.10854 1.06781 1.19633 1.33340 0.94415 0.88369 0.90296 1.25492 1.03368 0.96914 1.01334 1.69829 1.52264 1.11166 1.29128 0.85157 0.76480 0.78441 0.80221 1.18687 1.22754 1.22520 0.92322 0.91978 0.94187 0.90313 0.90164 0.84970 0.86124 0.91951 0.91221 0.84277 0.84897 0.89654 0.86333 0.91309 0.93525 0.79912 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.03 71.98 0.65 -3.54 16 2 C -0.10 -3.14 2.46 -10.71 -0.03 -3.16 16 3 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.13 3.31 5.72 86.36 0.49 3.80 16 5 N -0.61 -13.92 2.97 -818.90 -2.43 -16.35 16 6 C 0.51 11.65 7.70 87.66 0.67 12.32 16 7 O -0.59 -18.76 15.39 -3.04 -0.05 -18.80 16 8 C -0.13 -1.58 4.05 29.85 0.12 -1.46 16 9 C -0.11 -1.49 4.26 30.60 0.13 -1.36 16 10 C -0.16 -1.24 5.26 30.60 0.16 -1.08 16 11 C 0.45 6.50 3.16 71.98 0.23 6.73 16 12 F -0.19 -3.45 16.80 44.97 0.76 -2.69 16 13 F -0.19 -2.92 17.32 44.97 0.78 -2.14 16 14 F -0.20 -3.69 16.80 44.97 0.76 -2.94 16 15 C 0.11 2.12 6.34 86.36 0.55 2.67 16 16 C -0.14 -4.14 5.66 30.67 0.17 -3.97 16 17 C 0.18 6.25 2.19 45.02 0.10 6.35 16 18 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 19 N -0.73 -34.48 4.41 -322.81 -1.42 -35.90 16 20 C -0.23 -11.73 9.93 84.03 0.83 -10.90 16 21 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 22 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 23 N -0.97 -58.42 13.06 21.65 0.28 -58.14 16 24 Si 0.97 44.71 29.55 68.60 2.03 46.74 16 25 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.54 7.36 -2.38 -0.02 1.53 16 31 H 0.08 2.26 7.01 -2.38 -0.02 2.24 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.13 0.74 7.94 -2.39 -0.02 0.72 16 34 H 0.12 1.02 7.69 -2.39 -0.02 1.00 16 35 H 0.06 1.16 7.76 -2.39 -0.02 1.14 16 36 H 0.07 1.18 7.76 -2.39 -0.02 1.16 16 37 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.12 1.31 5.95 -2.39 -0.01 1.30 16 41 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.37 19.36 7.50 -92.70 -0.70 18.67 16 44 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -70.54 365.32 5.56 -64.97 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.31 Total: 22.79 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 4.55 Total: 2.46 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.57 Total: -110.40 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.80 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 2.29 Total: -7.77 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -70.54 5.56 -64.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753763514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.014 kcal (2) G-P(sol) polarization free energy of solvation -70.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds