Wall clock time and date at job start Tue Mar 31 2020 16:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52537 * 2 1 4 4 C 1.53195 * 109.49760 * 120.07960 * 2 1 3 5 5 N 1.46919 * 108.89273 * 174.65835 * 4 2 1 6 6 C 1.34780 * 120.63395 * 126.29715 * 5 4 2 7 7 O 1.21284 * 119.99750 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00162 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46896 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47063 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47344 * 179.97438 * 10 9 8 12 12 F 1.39903 * 109.47052 * 59.99670 * 11 10 9 13 13 F 1.39899 * 109.47459 * 179.97438 * 11 10 9 14 14 F 1.39905 * 109.46935 * 300.00121 * 11 10 9 15 15 C 1.46933 * 118.74003 * 306.32349 * 5 4 2 16 16 C 1.53188 * 108.77495 * 53.60503 * 15 5 4 17 17 C 1.53034 * 109.31404 * 305.36890 * 16 15 5 18 18 H 1.08996 * 109.45916 * 181.37287 * 17 16 15 19 19 N 1.46506 * 109.46080 * 301.34180 * 17 16 15 20 20 C 1.36932 * 120.00206 * 275.00497 * 19 17 16 21 21 H 1.07995 * 120.00021 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99589 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00727 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99741 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47035 * 60.00042 * 24 22 20 26 26 H 1.48496 * 109.47143 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47296 * 300.00074 * 24 22 20 28 28 H 1.09005 * 109.46904 * 299.91811 * 1 2 3 29 29 H 1.08994 * 109.46936 * 59.92176 * 1 2 3 30 30 H 1.08994 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.58720 * 54.79865 * 4 2 1 32 32 H 1.08996 * 109.58651 * 294.51761 * 4 2 1 33 33 H 1.09000 * 109.47171 * 299.99537 * 8 6 5 34 34 H 1.08993 * 109.47429 * 60.00485 * 8 6 5 35 35 H 1.08999 * 109.47240 * 299.99805 * 9 8 6 36 36 H 1.09003 * 109.47483 * 59.99982 * 9 8 6 37 37 H 1.09004 * 109.47236 * 299.99654 * 10 9 8 38 38 H 1.09000 * 109.47541 * 59.99685 * 10 9 8 39 39 H 1.08994 * 109.58580 * 173.39910 * 15 5 4 40 40 H 1.09006 * 109.57831 * 293.67403 * 15 5 4 41 41 H 1.08994 * 109.49494 * 65.32533 * 16 15 5 42 42 H 1.09000 * 109.49460 * 185.41816 * 16 15 5 43 43 H 0.97007 * 119.99656 * 95.00201 * 19 17 16 44 44 H 0.96991 * 120.00497 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5047 -0.8290 1.1731 6 6 4.2790 -0.3843 2.1827 7 8 3.7687 0.1079 3.1667 8 6 5.7787 -0.4988 2.0890 9 6 6.4142 0.0747 3.3572 10 6 7.9368 -0.0409 3.2618 11 6 8.5724 0.5331 4.5296 12 9 8.1192 -0.1821 5.6433 13 9 9.9646 0.4269 4.4426 14 9 8.2143 1.8790 4.6624 15 6 4.1083 -1.4277 -0.0253 16 6 3.5766 -0.6973 -1.2625 17 6 2.0466 -0.7256 -1.2483 18 1 1.6659 -0.2277 -2.1401 19 7 1.5842 -2.1156 -1.2305 20 6 1.4555 -2.8095 -2.4039 21 1 1.6945 -2.3320 -3.3426 22 6 1.0179 -4.1267 -2.3868 23 7 0.7271 -4.7090 -1.2428 24 14 0.8416 -5.0732 -3.9877 25 1 2.1589 -5.1416 -4.6699 26 1 0.3621 -6.4487 -3.6993 27 1 -0.1356 -4.3818 -4.8665 28 1 -0.3633 0.5126 0.8908 29 1 -0.3633 0.5150 -0.8892 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6053 -1.7216 1.2981 32 1 1.7616 -0.1592 2.1390 33 1 6.0573 -1.5475 1.9858 34 1 6.1321 0.0582 1.2213 35 1 6.1356 1.1234 3.4609 36 1 6.0608 -0.4826 4.2247 37 1 8.2158 -1.0895 3.1579 38 1 8.2900 0.5166 2.3943 39 1 5.1924 -1.3254 0.0216 40 1 3.8429 -2.4836 -0.0794 41 1 3.9216 0.3365 -1.2508 42 1 3.9413 -1.1929 -2.1622 43 1 1.3692 -2.5445 -0.3873 44 1 0.4217 -5.6295 -1.2309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753763515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:12 Heat of formation + Delta-G solvation = -216.011883 kcal Electronic energy + Delta-G solvation = -28055.406991 eV Core-core repulsion = 23591.381590 eV Total energy + Delta-G solvation = -4464.025401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -51.03499 -48.54294 -48.52975 -41.31443 -39.17069 -35.95291 -35.81523 -34.42802 -32.95447 -30.91523 -30.69458 -27.68253 -26.58286 -25.35375 -24.80720 -23.01740 -22.67155 -20.73794 -19.59753 -19.49185 -19.27347 -19.14751 -18.47488 -17.70615 -16.99282 -16.74607 -16.48328 -15.88636 -15.77762 -15.51049 -15.44775 -15.15013 -14.95720 -14.80837 -14.72060 -14.69257 -14.65166 -14.29494 -14.15615 -13.67154 -13.58366 -13.09268 -12.97360 -12.89157 -12.81853 -12.79619 -12.62692 -12.40166 -12.24099 -12.14422 -11.93081 -11.85017 -11.79447 -11.55265 -11.12235 -10.88375 -10.70037 -9.53897 -8.89822 -7.86721 -5.12719 1.51433 1.52542 1.58314 1.68225 1.84440 2.11621 2.61634 2.92283 3.08201 3.16528 3.47071 3.57045 3.86547 3.90945 4.00018 4.04504 4.12158 4.14713 4.24093 4.37339 4.44072 4.50288 4.55009 4.63298 4.70603 4.73630 4.75183 4.88165 5.00953 5.04292 5.07564 5.16170 5.21935 5.27844 5.33100 5.36239 5.50027 5.62689 5.69406 6.35100 6.54515 7.21786 7.42638 8.19797 8.42798 9.36425 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.020348 B = 0.002600 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.740456 B =10768.551895 C =11434.099166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.123 3.877 5 N -0.603 5.603 6 C 0.505 3.495 7 O -0.592 6.592 8 C -0.129 4.129 9 C -0.106 4.106 10 C -0.155 4.155 11 C 0.447 3.553 12 F -0.196 7.196 13 F -0.190 7.190 14 F -0.194 7.194 15 C 0.118 3.882 16 C -0.142 4.142 17 C 0.170 3.830 18 H 0.045 0.955 19 N -0.725 5.725 20 C -0.225 4.225 21 H 0.075 0.925 22 C -0.074 4.074 23 N -0.970 5.970 24 Si 0.963 3.037 25 H -0.277 1.277 26 H -0.304 1.304 27 H -0.284 1.284 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.116 0.884 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.373 0.627 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.232 11.727 6.001 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.117 4.117 3 H 0.104 0.896 4 C 0.000 4.000 5 N -0.334 5.334 6 C 0.296 3.704 7 O -0.474 6.474 8 C -0.168 4.168 9 C -0.144 4.144 10 C -0.193 4.193 11 C 0.393 3.607 12 F -0.178 7.178 13 F -0.171 7.171 14 F -0.176 7.176 15 C -0.004 4.004 16 C -0.183 4.183 17 C 0.062 3.938 18 H 0.063 0.937 19 N -0.366 5.366 20 C -0.357 4.357 21 H 0.093 0.907 22 C -0.266 4.266 23 N -0.621 5.621 24 Si 0.794 3.206 25 H -0.203 1.203 26 H -0.231 1.231 27 H -0.210 1.210 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.134 0.866 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.206 0.794 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.983 11.952 6.343 20.941 hybrid contribution -0.679 -1.044 -0.169 1.257 sum 15.304 10.908 6.174 19.782 Atomic orbital electron populations 1.21603 0.94444 1.01367 1.01648 1.21667 0.96303 0.99306 0.94451 0.89636 1.21417 0.80173 0.99841 0.98616 1.48210 1.06505 1.59779 1.18947 1.21376 0.91154 0.76482 0.81437 1.90662 1.76692 1.47274 1.32749 1.21676 0.88716 1.05685 1.00730 1.21238 0.92250 1.02721 0.98192 1.22937 0.96062 1.06609 0.93688 1.21032 0.76402 0.75820 0.87464 1.93173 1.88935 1.78253 1.57392 1.93180 1.31594 1.95864 1.96467 1.93173 1.91627 1.36122 1.96646 1.21735 0.98804 0.96798 0.83078 1.22386 0.97843 1.00476 0.97600 1.20515 0.92803 0.84989 0.95503 0.93744 1.42596 1.79180 1.09309 1.05562 1.19528 1.34700 0.93774 0.87736 0.90665 1.25379 1.03670 0.98501 0.99033 1.69791 1.53928 1.12867 1.25558 0.85363 0.77891 0.77320 0.80069 1.20349 1.23057 1.21045 0.91922 0.92227 0.94294 0.93601 0.90382 0.86277 0.85272 0.91227 0.91802 0.84846 0.84388 0.86624 0.93164 0.90286 0.91351 0.79377 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.07 71.98 0.65 -3.50 16 2 C -0.10 -2.99 2.68 -10.61 -0.03 -3.02 16 3 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.12 4.03 5.41 86.36 0.47 4.50 16 5 N -0.60 -17.19 2.97 -818.90 -2.44 -19.62 16 6 C 0.50 13.60 7.70 87.66 0.67 14.27 16 7 O -0.59 -20.67 15.39 -3.04 -0.05 -20.71 16 8 C -0.13 -1.98 4.05 29.85 0.12 -1.86 16 9 C -0.11 -1.69 4.26 30.60 0.13 -1.56 16 10 C -0.16 -1.50 5.26 30.59 0.16 -1.34 16 11 C 0.45 7.01 3.16 71.98 0.23 7.24 16 12 F -0.20 -3.85 16.80 44.97 0.76 -3.10 16 13 F -0.19 -3.08 17.32 44.97 0.78 -2.30 16 14 F -0.19 -3.67 16.80 44.97 0.76 -2.91 16 15 C 0.12 3.09 6.08 86.36 0.53 3.62 16 16 C -0.14 -3.95 5.78 30.67 0.18 -3.77 16 17 C 0.17 5.88 2.54 45.12 0.11 5.99 16 18 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 19 N -0.73 -32.53 3.65 -322.34 -1.18 -33.71 16 20 C -0.23 -11.43 9.93 84.03 0.83 -10.59 16 21 H 0.08 3.66 7.83 -2.91 -0.02 3.64 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 23 N -0.97 -56.92 13.06 21.65 0.28 -56.64 16 24 Si 0.96 44.23 29.55 68.60 2.03 46.26 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.46 7.55 -2.39 -0.02 1.44 16 31 H 0.05 1.76 6.64 -2.39 -0.02 1.75 16 32 H 0.08 2.63 7.00 -2.39 -0.02 2.61 16 33 H 0.12 1.39 7.94 -2.39 -0.02 1.37 16 34 H 0.13 1.21 7.69 -2.39 -0.02 1.19 16 35 H 0.07 1.32 7.76 -2.39 -0.02 1.30 16 36 H 0.06 1.29 7.76 -2.39 -0.02 1.27 16 37 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.12 1.98 5.93 -2.39 -0.01 1.96 16 40 H 0.05 1.71 7.75 -2.38 -0.02 1.69 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.37 18.50 5.93 -92.70 -0.55 17.95 16 44 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -67.26 361.45 5.93 -61.34 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.46 Total: 24.95 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 4.52 Total: 6.44 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -3.33 Total: -109.97 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.71 kcal Atomic # 9 Polarization: -10.60 SS G_CDS: 2.29 Total: -8.31 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -67.26 5.93 -61.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753763515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.675 kcal (2) G-P(sol) polarization free energy of solvation -67.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds