Wall clock time and date at job start Tue Mar 31 2020 16:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00090 * 2 1 4 4 C 1.50699 * 109.47345 * 180.02562 * 3 2 1 5 5 C 1.35124 * 125.62000 * 90.01321 * 4 3 2 6 6 C 1.40366 * 107.11493 * 179.71204 * 5 4 3 7 7 C 1.36540 * 106.71031 * 0.40800 * 6 5 4 8 8 C 1.46654 * 125.98949 * 179.85162 * 7 6 5 9 9 O 1.21699 * 119.99786 * 359.71735 * 8 7 6 10 10 N 1.34777 * 119.99938 * 179.72016 * 8 7 6 11 11 C 1.47490 * 127.03567 * 0.02562 * 10 8 7 12 12 C 1.53999 * 107.08258 * 205.41653 * 11 10 8 13 13 H 1.09006 * 110.32425 * 117.69370 * 12 11 10 14 14 C 1.53006 * 110.32610 * 239.80098 * 12 11 10 15 15 C 1.54612 * 105.04719 * 358.69654 * 12 11 10 16 16 H 1.08993 * 110.74169 * 96.49269 * 15 12 11 17 17 C 1.53003 * 110.73733 * 219.81390 * 15 12 11 18 18 N 1.46507 * 109.47020 * 184.99928 * 17 15 12 19 19 C 1.36940 * 119.99763 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99918 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99808 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99835 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00132 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46994 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47201 * 119.99815 * 23 21 19 26 26 H 1.48501 * 109.47071 * 240.00416 * 23 21 19 27 27 C 1.48119 * 127.03160 * 179.97438 * 10 8 7 28 28 O 1.33936 * 125.61506 * 269.97607 * 4 3 2 29 29 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47247 * 300.00160 * 1 2 3 31 31 H 1.09001 * 109.46644 * 60.00583 * 1 2 3 32 32 H 1.09003 * 109.47307 * 59.99850 * 3 2 1 33 33 H 1.09000 * 109.47131 * 299.99343 * 3 2 1 34 34 H 1.08004 * 126.44139 * 359.96582 * 5 4 3 35 35 H 1.08007 * 126.64577 * 180.29914 * 6 5 4 36 36 H 1.08999 * 109.91041 * 86.05176 * 11 10 8 37 37 H 1.08997 * 110.06947 * 324.86555 * 11 10 8 38 38 H 1.09001 * 109.47002 * 58.54740 * 14 12 11 39 39 H 1.08993 * 109.46955 * 178.55177 * 14 12 11 40 40 H 1.09000 * 109.47050 * 298.55006 * 14 12 11 41 41 H 1.08997 * 109.47354 * 304.99892 * 17 15 12 42 42 H 1.09000 * 109.47247 * 64.99996 * 17 15 12 43 43 H 0.96997 * 119.99736 * 0.02562 * 18 17 15 44 44 H 0.97000 * 119.99749 * 179.97438 * 22 21 19 45 45 H 1.08999 * 110.65764 * 259.18115 * 27 10 8 46 46 H 1.08996 * 110.66532 * 22.12857 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2966 1.1248 -1.0994 6 6 5.6242 1.0263 -0.6545 7 6 5.5818 1.0236 0.7103 8 6 6.7376 0.9326 1.6083 9 8 7.8606 0.8447 1.1476 10 7 6.5562 0.9463 2.9437 11 6 5.2735 1.0460 3.6650 12 6 5.5774 1.6555 5.0462 13 1 5.0653 2.6111 5.1593 14 6 5.1543 0.6921 6.1570 15 6 7.1099 1.8592 5.0667 16 1 7.3670 2.8828 4.7943 17 6 7.6857 1.5012 6.4382 18 7 9.1163 1.8164 6.4647 19 6 9.8487 1.5796 7.5973 20 1 9.3718 1.1601 8.4708 21 6 11.2042 1.8777 7.6222 22 7 11.7853 2.3885 6.5573 23 14 12.2035 1.5541 9.1668 24 1 11.3219 0.9817 10.2159 25 1 13.2944 0.5949 8.8588 26 1 12.7883 2.8292 9.6542 27 6 7.6040 0.8631 3.9873 28 8 4.2905 1.1252 1.0879 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.9646 1.1510 -2.1268 35 1 6.5081 0.9629 -1.2720 36 1 4.8368 0.0545 3.7846 37 1 4.5859 1.6908 3.1178 38 1 5.6827 -0.2539 6.0383 39 1 5.3989 1.1257 7.1266 40 1 4.0800 0.5181 6.0974 41 1 7.1727 2.0762 7.2091 42 1 7.5448 0.4366 6.6249 43 1 9.5443 2.1934 5.6802 44 1 12.7324 2.5971 6.5749 45 1 7.6629 -0.1466 4.3936 46 1 8.5699 1.1725 3.5880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754817835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:31 Heat of formation + Delta-G solvation = -43.667362 kcal Electronic energy + Delta-G solvation = -27215.424182 eV Core-core repulsion = 23300.728940 eV Total energy + Delta-G solvation = -3914.695242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.95850 -39.97353 -38.34870 -37.97551 -34.71157 -33.49718 -32.84747 -31.56327 -31.15400 -29.20071 -27.82091 -26.65583 -26.01548 -25.11670 -23.47203 -22.13998 -21.99735 -21.36678 -19.94882 -19.04306 -17.86685 -17.30187 -16.89344 -16.66184 -16.27845 -16.27434 -15.69465 -15.67930 -14.78636 -14.65567 -14.29900 -13.99707 -13.60977 -13.44973 -13.32438 -13.22922 -13.15593 -12.85975 -12.45178 -12.37122 -12.29704 -12.13176 -11.95489 -11.81382 -11.59021 -10.97498 -10.84536 -10.50459 -10.40910 -10.32700 -10.27436 -10.22818 -10.20192 -9.93163 -9.66472 -8.97204 -8.85426 -8.59946 -6.89798 -5.73442 -3.02748 0.79016 1.97389 2.28828 2.94643 3.12992 3.45519 3.49615 3.50644 3.53292 4.20128 4.40180 4.58732 4.59937 4.62905 4.69504 4.74116 4.84442 4.85915 4.89189 4.94639 5.19259 5.29320 5.38339 5.46348 5.48040 5.55648 5.56870 5.61897 5.63705 5.83675 5.87961 5.96585 6.08571 6.09091 6.13737 6.17981 6.29810 6.40117 6.48038 6.50311 6.66474 6.72977 6.85881 7.47797 7.72534 8.01408 8.44798 9.55973 10.13480 10.47605 11.49273 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.002503 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.004424 B =11183.132327 C =12156.444633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.141 3.859 4 C 0.001 3.999 5 C -0.190 4.190 6 C -0.128 4.128 7 C -0.053 4.053 8 C 0.614 3.386 9 O -0.516 6.516 10 N -0.611 5.611 11 C 0.104 3.896 12 C -0.098 4.098 13 H 0.083 0.917 14 C -0.145 4.145 15 C -0.103 4.103 16 H 0.084 0.916 17 C 0.165 3.835 18 N -0.734 5.734 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.116 3.884 28 O -0.152 6.152 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.025 0.975 42 H 0.026 0.974 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.079 0.921 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.867 -2.115 -14.334 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.065 3.935 4 C -0.051 4.051 5 C -0.209 4.209 6 C -0.148 4.148 7 C -0.106 4.106 8 C 0.402 3.598 9 O -0.394 6.394 10 N -0.343 5.343 11 C -0.018 4.018 12 C -0.118 4.118 13 H 0.101 0.899 14 C -0.202 4.202 15 C -0.123 4.123 16 H 0.102 0.898 17 C 0.037 3.963 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.005 4.005 28 O -0.047 6.047 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.044 0.956 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.192 -2.384 -14.180 29.007 hybrid contribution 0.531 0.205 0.345 0.666 sum -24.662 -2.179 -13.835 28.361 Atomic orbital electron populations 1.22815 0.79950 1.03416 1.00356 1.87999 1.20347 1.26545 1.95520 1.20714 0.84137 0.85984 1.02668 1.22218 0.92776 1.05461 0.84649 1.21606 0.92358 1.07285 0.99700 1.21965 0.98628 1.01333 0.92904 1.22195 0.81908 1.11833 0.94615 1.16126 0.85902 0.77701 0.80074 1.90924 1.22109 1.51239 1.75123 1.48732 1.10347 1.70862 1.04347 1.22348 0.85568 1.01302 0.92631 1.22043 0.96634 0.99578 0.93504 0.89894 1.21906 1.00294 0.99423 0.98605 1.22535 0.93308 0.99809 0.96628 0.89801 1.20714 0.86324 0.97456 0.91781 1.42423 1.03227 1.76796 1.15406 1.19243 0.90863 1.34958 0.92007 0.91124 1.24760 0.96883 1.01890 0.97501 1.69675 1.10826 1.49420 1.28040 0.86125 0.80260 0.77340 0.82502 1.20580 1.21875 1.21922 1.22663 0.91704 1.00028 0.86085 1.84116 1.16349 1.69948 1.34326 0.89085 0.93564 0.93641 0.91020 0.89607 0.82497 0.81905 0.91140 0.90423 0.92084 0.91266 0.92989 0.95775 0.95626 0.78261 0.93532 0.90313 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.26 10.69 -35.23 -0.38 -3.63 16 3 C 0.14 0.97 6.46 36.01 0.23 1.21 16 4 C 0.00 0.01 6.94 -35.42 -0.25 -0.24 16 5 C -0.19 -1.86 10.77 -39.89 -0.43 -2.29 16 6 C -0.13 -1.54 10.62 -39.39 -0.42 -1.96 16 7 C -0.05 -0.74 6.95 -36.80 -0.26 -0.99 16 8 C 0.61 10.18 7.86 -12.86 -0.10 10.08 16 9 O -0.52 -10.21 17.07 5.19 0.09 -10.12 16 10 N -0.61 -9.40 3.29 -171.29 -0.56 -9.96 16 11 C 0.10 1.29 5.95 -2.98 -0.02 1.27 16 12 C -0.10 -1.21 3.53 -89.25 -0.31 -1.52 16 13 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.14 -1.63 7.79 37.16 0.29 -1.34 16 15 C -0.10 -1.66 3.01 -88.73 -0.27 -1.92 16 16 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 17 C 0.17 3.18 4.44 -4.04 -0.02 3.16 16 18 N -0.73 -18.48 5.52 -59.90 -0.33 -18.81 16 19 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 23 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 C 0.12 1.97 6.45 -2.11 -0.01 1.95 16 28 O -0.15 -1.86 7.96 4.99 0.04 -1.82 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 37 H 0.08 0.89 6.23 -51.93 -0.32 0.56 16 38 H 0.06 0.73 7.51 -51.93 -0.39 0.34 16 39 H 0.07 0.82 6.76 -51.93 -0.35 0.47 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.47 7.37 -51.93 -0.38 0.09 16 42 H 0.03 0.49 6.80 -51.93 -0.35 0.14 16 43 H 0.38 10.30 7.67 -40.82 -0.31 9.98 16 44 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.08 1.33 7.94 -51.93 -0.41 0.91 16 46 H 0.09 1.80 7.85 -51.93 -0.41 1.39 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -34.32 378.93 -7.53 -41.85 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.10 Total: 5.77 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -0.69 Total: 1.30 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.17 Total: -56.65 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.25 Total: -15.57 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.32 -7.53 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754817835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.813 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds