Wall clock time and date at job start Tue Mar 31 2020 16:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00090 * 2 1 4 4 C 1.50699 * 109.47345 * 180.02562 * 3 2 1 5 5 C 1.35124 * 125.62000 * 90.01321 * 4 3 2 6 6 C 1.40366 * 107.11493 * 179.71204 * 5 4 3 7 7 C 1.36540 * 106.71031 * 0.40800 * 6 5 4 8 8 C 1.46654 * 125.98949 * 179.85162 * 7 6 5 9 9 O 1.21699 * 119.99786 * 359.71735 * 8 7 6 10 10 N 1.34777 * 119.99938 * 179.72016 * 8 7 6 11 11 C 1.47490 * 127.03567 * 0.02562 * 10 8 7 12 12 C 1.53999 * 107.08258 * 205.41653 * 11 10 8 13 13 H 1.09006 * 110.32425 * 117.69370 * 12 11 10 14 14 C 1.53006 * 110.32610 * 239.80098 * 12 11 10 15 15 C 1.54612 * 105.04719 * 358.69654 * 12 11 10 16 16 H 1.08993 * 110.74169 * 96.49269 * 15 12 11 17 17 C 1.53003 * 110.73733 * 219.81390 * 15 12 11 18 18 N 1.46507 * 109.47020 * 184.99928 * 17 15 12 19 19 C 1.36940 * 119.99763 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99918 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99808 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99835 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00132 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46994 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47201 * 119.99815 * 23 21 19 26 26 H 1.48501 * 109.47071 * 240.00416 * 23 21 19 27 27 C 1.48119 * 127.03160 * 179.97438 * 10 8 7 28 28 O 1.33936 * 125.61506 * 269.97607 * 4 3 2 29 29 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47247 * 300.00160 * 1 2 3 31 31 H 1.09001 * 109.46644 * 60.00583 * 1 2 3 32 32 H 1.09003 * 109.47307 * 59.99850 * 3 2 1 33 33 H 1.09000 * 109.47131 * 299.99343 * 3 2 1 34 34 H 1.08004 * 126.44139 * 359.96582 * 5 4 3 35 35 H 1.08007 * 126.64577 * 180.29914 * 6 5 4 36 36 H 1.08999 * 109.91041 * 86.05176 * 11 10 8 37 37 H 1.08997 * 110.06947 * 324.86555 * 11 10 8 38 38 H 1.09001 * 109.47002 * 58.54740 * 14 12 11 39 39 H 1.08993 * 109.46955 * 178.55177 * 14 12 11 40 40 H 1.09000 * 109.47050 * 298.55006 * 14 12 11 41 41 H 1.08997 * 109.47354 * 304.99892 * 17 15 12 42 42 H 1.09000 * 109.47247 * 64.99996 * 17 15 12 43 43 H 0.96997 * 119.99736 * 0.02562 * 18 17 15 44 44 H 0.97000 * 119.99749 * 179.97438 * 22 21 19 45 45 H 1.08999 * 110.65764 * 259.18115 * 27 10 8 46 46 H 1.08996 * 110.66532 * 22.12857 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2966 1.1248 -1.0994 6 6 5.6242 1.0263 -0.6545 7 6 5.5818 1.0236 0.7103 8 6 6.7376 0.9326 1.6083 9 8 7.8606 0.8447 1.1476 10 7 6.5562 0.9463 2.9437 11 6 5.2735 1.0460 3.6650 12 6 5.5774 1.6555 5.0462 13 1 5.0653 2.6111 5.1593 14 6 5.1543 0.6921 6.1570 15 6 7.1099 1.8592 5.0667 16 1 7.3670 2.8828 4.7943 17 6 7.6857 1.5012 6.4382 18 7 9.1163 1.8164 6.4647 19 6 9.8487 1.5796 7.5973 20 1 9.3718 1.1601 8.4708 21 6 11.2042 1.8777 7.6222 22 7 11.7853 2.3885 6.5573 23 14 12.2035 1.5541 9.1668 24 1 11.3219 0.9817 10.2159 25 1 13.2944 0.5949 8.8588 26 1 12.7883 2.8292 9.6542 27 6 7.6040 0.8631 3.9873 28 8 4.2905 1.1252 1.0879 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.9646 1.1510 -2.1268 35 1 6.5081 0.9629 -1.2720 36 1 4.8368 0.0545 3.7846 37 1 4.5859 1.6908 3.1178 38 1 5.6827 -0.2539 6.0383 39 1 5.3989 1.1257 7.1266 40 1 4.0800 0.5181 6.0974 41 1 7.1727 2.0762 7.2091 42 1 7.5448 0.4366 6.6249 43 1 9.5443 2.1934 5.6802 44 1 12.7324 2.5971 6.5749 45 1 7.6629 -0.1466 4.3936 46 1 8.5699 1.1725 3.5880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754817835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:30 Heat of formation + Delta-G solvation = -67.326458 kcal Electronic energy + Delta-G solvation = -27216.450117 eV Core-core repulsion = 23300.728940 eV Total energy + Delta-G solvation = -3915.721177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.84163 -41.21662 -39.32372 -38.80221 -36.48940 -34.59135 -34.11368 -32.88303 -32.35943 -30.64822 -28.71901 -27.55089 -27.01118 -26.32166 -25.01098 -23.59671 -22.96400 -22.31659 -21.00197 -20.38092 -19.29788 -18.54316 -18.00367 -17.58780 -17.26824 -16.96901 -16.82474 -16.56961 -16.40681 -16.00615 -15.37205 -15.26360 -15.06298 -14.81760 -14.50688 -14.23043 -14.06897 -13.87524 -13.59022 -13.53838 -13.46689 -13.12504 -12.96788 -12.86613 -12.79910 -12.71127 -12.34615 -12.11100 -11.86004 -11.70715 -11.58739 -11.49346 -11.38002 -11.13771 -10.91366 -10.72318 -10.07455 -9.66052 -8.98637 -7.93975 -5.23243 -0.18289 1.13573 1.34156 1.47260 1.48582 1.58579 1.85364 1.96437 2.56453 2.93118 3.29223 3.39998 3.50298 3.59419 3.76423 3.81224 3.83719 4.07279 4.19045 4.20475 4.29741 4.32711 4.41933 4.51648 4.53207 4.56872 4.60859 4.62473 4.71357 4.76144 4.76812 4.82160 4.87495 4.93589 4.98702 5.09899 5.17822 5.22392 5.29707 5.35963 5.51586 5.51686 5.76647 6.10506 6.27589 6.28080 6.76257 7.33538 8.09996 8.31551 9.30017 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.002503 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.004424 B =11183.132327 C =12156.444633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.139 3.861 4 C 0.009 3.991 5 C -0.191 4.191 6 C -0.124 4.124 7 C -0.086 4.086 8 C 0.608 3.392 9 O -0.565 6.565 10 N -0.611 5.611 11 C 0.107 3.893 12 C -0.086 4.086 13 H 0.104 0.896 14 C -0.143 4.143 15 C -0.095 4.095 16 H 0.069 0.931 17 C 0.167 3.833 18 N -0.750 5.750 19 C -0.239 4.239 20 H 0.081 0.919 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.975 3.025 24 H -0.262 1.262 25 H -0.296 1.296 26 H -0.294 1.294 27 C 0.119 3.881 28 O -0.157 6.157 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.189 0.811 35 H 0.165 0.835 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.370 0.630 44 H 0.250 0.750 45 H 0.077 0.923 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.640 -2.263 -14.191 32.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.064 3.936 4 C -0.043 4.043 5 C -0.210 4.210 6 C -0.144 4.144 7 C -0.138 4.138 8 C 0.398 3.602 9 O -0.447 6.447 10 N -0.342 5.342 11 C -0.015 4.015 12 C -0.105 4.105 13 H 0.122 0.878 14 C -0.200 4.200 15 C -0.115 4.115 16 H 0.088 0.912 17 C 0.041 3.959 18 N -0.392 5.392 19 C -0.371 4.371 20 H 0.099 0.901 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.186 1.186 25 H -0.224 1.224 26 H -0.222 1.222 27 C -0.003 4.003 28 O -0.053 6.053 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.207 0.793 35 H 0.182 0.818 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -29.055 -2.547 -14.000 32.352 hybrid contribution 1.525 0.228 0.223 1.558 sum -27.530 -2.319 -13.777 30.872 Atomic orbital electron populations 1.23000 0.78090 1.04165 1.01730 1.87941 1.22387 1.27357 1.95837 1.21003 0.81668 0.85965 1.04991 1.23057 0.94292 1.02930 0.84069 1.21960 0.90892 1.06829 1.01311 1.22244 1.00091 0.99711 0.92400 1.21665 0.82066 1.15556 0.94517 1.16518 0.86305 0.76848 0.80487 1.90878 1.24190 1.53609 1.76025 1.48789 1.11061 1.70337 1.04049 1.22524 0.84258 1.02470 0.92213 1.22046 0.93260 1.01143 0.94051 0.87755 1.21899 1.02131 0.98387 0.97589 1.22365 0.96308 0.98469 0.94345 0.91237 1.20869 0.83368 0.97794 0.93873 1.42694 1.05554 1.76698 1.14255 1.19695 0.91282 1.33247 0.92864 0.90111 1.25629 0.98297 1.02799 1.00615 1.69850 1.10697 1.51507 1.30322 0.85048 0.78530 0.76769 0.79273 1.18587 1.22362 1.22169 1.22446 0.90883 1.00054 0.86889 1.84076 1.15642 1.70248 1.35348 0.88777 0.92551 0.91876 0.89554 0.86413 0.79329 0.81771 0.89756 0.88948 0.93004 0.91702 0.90021 0.94723 0.94829 0.79830 0.94162 0.90450 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.41 -5.77 10.69 -148.98 -1.59 -7.36 16 3 C 0.14 1.41 6.46 71.24 0.46 1.87 16 4 C 0.01 0.15 6.94 24.97 0.17 0.33 16 5 C -0.19 -3.28 10.77 22.07 0.24 -3.04 16 6 C -0.12 -2.93 10.62 22.39 0.24 -2.69 16 7 C -0.09 -2.40 6.95 24.07 0.17 -2.23 16 8 C 0.61 21.10 7.86 86.44 0.68 21.78 16 9 O -0.57 -24.02 17.07 -4.34 -0.07 -24.09 16 10 N -0.61 -19.27 3.29 -814.07 -2.68 -21.95 16 11 C 0.11 2.46 5.95 86.53 0.51 2.97 16 12 C -0.09 -1.94 3.53 -9.91 -0.03 -1.97 16 13 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 14 C -0.14 -2.82 7.79 71.98 0.56 -2.26 16 15 C -0.10 -3.08 3.01 -9.57 -0.03 -3.11 16 16 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 17 C 0.17 6.42 4.44 86.38 0.38 6.80 16 18 N -0.75 -38.58 5.52 -343.43 -1.90 -40.48 16 19 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 20 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 21 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 22 N -0.97 -61.70 13.06 21.65 0.28 -61.42 16 23 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 26 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 27 C 0.12 4.25 6.45 86.74 0.56 4.81 16 28 O -0.16 -3.61 7.96 -5.06 -0.04 -3.65 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 36 H 0.08 1.75 7.68 -2.39 -0.02 1.73 16 37 H 0.09 1.90 6.23 -2.39 -0.01 1.88 16 38 H 0.05 1.13 7.51 -2.39 -0.02 1.11 16 39 H 0.06 1.36 6.76 -2.39 -0.02 1.34 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.03 1.29 7.37 -2.39 -0.02 1.27 16 42 H 0.03 1.27 6.80 -2.39 -0.02 1.25 16 43 H 0.37 20.82 7.67 -92.71 -0.71 20.11 16 44 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 45 H 0.08 2.73 7.94 -2.39 -0.02 2.71 16 46 H 0.05 2.35 7.85 -2.39 -0.02 2.33 16 Total: -1.00 -77.48 378.93 2.77 -74.71 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.28 Total: 27.43 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 6.47 Total: 7.72 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -4.29 Total: -123.84 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.71 Total: -35.10 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -77.48 2.77 -74.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754817835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.387 kcal (2) G-P(sol) polarization free energy of solvation -77.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds