Wall clock time and date at job start Tue Mar 31 2020 16:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99920 * 2 1 4 4 C 1.50695 * 109.47369 * 180.02562 * 3 2 1 5 5 C 1.35137 * 125.61758 * 90.02538 * 4 3 2 6 6 C 1.40360 * 107.11519 * 179.78394 * 5 4 3 7 7 C 1.36538 * 106.70997 * 0.35083 * 6 5 4 8 8 C 1.46660 * 125.98926 * 179.90832 * 7 6 5 9 9 O 1.21694 * 119.99905 * 359.71813 * 8 7 6 10 10 N 1.34774 * 119.99886 * 179.71410 * 8 7 6 11 11 C 1.48140 * 127.84215 * 0.02668 * 10 8 7 12 12 C 1.54390 * 104.61751 * 140.41099 * 11 10 8 13 13 H 1.08999 * 110.34788 * 264.99687 * 12 11 10 14 14 C 1.53009 * 110.34019 * 142.74073 * 12 11 10 15 15 C 1.54283 * 104.96027 * 23.87293 * 12 11 10 16 16 H 1.08994 * 110.34422 * 118.97437 * 15 12 11 17 17 C 1.53004 * 110.34241 * 241.12630 * 15 12 11 18 18 N 1.46499 * 109.47198 * 184.99856 * 17 15 12 19 19 C 1.36939 * 119.99933 * 180.27608 * 18 17 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 17 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 17 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47144 * 90.00258 * 23 21 19 25 25 H 1.48500 * 109.47140 * 210.00775 * 23 21 19 26 26 H 1.48502 * 109.46967 * 330.00206 * 23 21 19 27 27 C 1.48150 * 127.83470 * 180.02562 * 10 8 7 28 28 O 1.33927 * 125.61953 * 270.02523 * 4 3 2 29 29 H 1.08999 * 109.46727 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46984 * 299.99286 * 1 2 3 31 31 H 1.09004 * 109.47304 * 59.99569 * 1 2 3 32 32 H 1.09001 * 109.47247 * 59.99937 * 3 2 1 33 33 H 1.09005 * 109.47157 * 300.00325 * 3 2 1 34 34 H 1.07997 * 126.43929 * 0.02562 * 5 4 3 35 35 H 1.08002 * 126.64413 * 180.22127 * 6 5 4 36 36 H 1.09005 * 110.40726 * 21.63469 * 11 10 8 37 37 H 1.09000 * 110.51305 * 259.24868 * 11 10 8 38 38 H 1.08997 * 109.47047 * 304.46281 * 14 12 11 39 39 H 1.08998 * 109.47070 * 64.46223 * 14 12 11 40 40 H 1.09002 * 109.46776 * 184.46575 * 14 12 11 41 41 H 1.09009 * 109.46730 * 64.99643 * 17 15 12 42 42 H 1.08998 * 109.46846 * 305.00188 * 17 15 12 43 43 H 0.97001 * 119.99790 * 359.97438 * 18 17 15 44 44 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 45 45 H 1.09009 * 110.40416 * 100.80630 * 27 10 8 46 46 H 1.09000 * 110.40871 * 338.37846 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.2966 1.1251 -1.0995 6 6 5.6240 1.0249 -0.6547 7 6 5.5816 1.0223 0.7101 8 6 6.7375 0.9309 1.6081 9 8 7.8604 0.8427 1.1474 10 7 6.5561 0.9448 2.9435 11 6 5.2782 1.0447 3.6861 12 6 5.4430 0.0766 4.8773 13 1 5.0161 -0.8970 4.6364 14 6 4.7789 0.6549 6.1286 15 6 6.9671 -0.0428 5.0856 16 1 7.2424 0.3088 6.0799 17 6 7.4187 -1.4917 4.8909 18 7 8.8441 -1.6058 5.2089 19 6 9.4749 -2.8165 5.1010 20 1 8.9204 -3.6880 4.7857 21 6 10.8269 -2.9235 5.3967 22 7 11.5025 -1.8613 5.7812 23 14 11.6872 -4.5751 5.2502 24 1 12.2294 -4.7307 3.8766 25 1 12.7992 -4.6428 6.2320 26 1 10.7167 -5.6648 5.5256 27 6 7.5896 0.8636 4.0018 28 8 4.2904 1.1243 1.0877 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.9646 1.1524 -2.1268 35 1 6.5077 0.9600 -1.2722 36 1 4.4463 0.7322 3.0548 37 1 5.1222 2.0629 4.0426 38 1 5.1884 1.6442 6.3329 39 1 3.7040 0.7331 5.9662 40 1 4.9714 -0.0005 6.9780 41 1 7.2525 -1.7879 3.8551 42 1 6.8457 -2.1426 5.5513 43 1 9.3422 -0.8229 5.4916 44 1 12.4472 -1.9362 5.9882 45 1 7.7967 1.8539 4.4076 46 1 8.5018 0.4146 3.6087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754817845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:37 Heat of formation + Delta-G solvation = -43.735344 kcal Electronic energy + Delta-G solvation = -27491.346058 eV Core-core repulsion = 23576.647868 eV Total energy + Delta-G solvation = -3914.698189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.90551 -39.86767 -38.29871 -37.83201 -34.57374 -33.45746 -32.73707 -31.55011 -31.31160 -29.16523 -27.74987 -26.45274 -26.14340 -25.19392 -23.40309 -22.15931 -21.72090 -20.91679 -20.04490 -19.50057 -17.77498 -17.23541 -17.02673 -16.57851 -16.26936 -16.20765 -15.73866 -15.44422 -14.70972 -14.31956 -14.29102 -13.83594 -13.73119 -13.34723 -13.24961 -13.16658 -13.13545 -12.82432 -12.66311 -12.58216 -12.29235 -11.92190 -11.90086 -11.55475 -11.45501 -11.02676 -10.81367 -10.58519 -10.47662 -10.28279 -10.26474 -10.21151 -10.11875 -9.93589 -9.59705 -8.91358 -8.81487 -8.54949 -6.86009 -5.70214 -2.98575 0.85350 2.02312 2.34508 2.99611 3.21863 3.49359 3.54112 3.54382 3.55493 4.25208 4.45212 4.59367 4.62743 4.67846 4.73925 4.78058 4.87859 4.89437 4.91876 5.00410 5.23673 5.36823 5.39323 5.46753 5.48427 5.53942 5.61329 5.61594 5.67665 5.75190 5.89241 5.98124 6.12996 6.14521 6.15069 6.22590 6.25099 6.47654 6.49729 6.55074 6.71115 6.77836 6.93301 7.56121 7.76521 8.10566 8.48670 9.59861 10.16661 10.51556 11.52814 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.002913 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.666148 B = 9608.782360 C =10053.745359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.142 3.858 4 C -0.001 4.001 5 C -0.189 4.189 6 C -0.128 4.128 7 C -0.051 4.051 8 C 0.616 3.384 9 O -0.511 6.511 10 N -0.609 5.609 11 C 0.101 3.899 12 C -0.101 4.101 13 H 0.084 0.916 14 C -0.140 4.140 15 C -0.104 4.104 16 H 0.091 0.909 17 C 0.162 3.838 18 N -0.731 5.731 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.110 3.890 28 O -0.152 6.152 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.018 0.982 42 H 0.021 0.979 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.070 0.930 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.011 11.417 -9.645 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.066 3.934 4 C -0.053 4.053 5 C -0.209 4.209 6 C -0.149 4.149 7 C -0.103 4.103 8 C 0.404 3.596 9 O -0.389 6.389 10 N -0.342 5.342 11 C -0.021 4.021 12 C -0.121 4.121 13 H 0.102 0.898 14 C -0.197 4.197 15 C -0.124 4.124 16 H 0.109 0.891 17 C 0.035 3.965 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.011 4.011 28 O -0.048 6.048 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.333 11.033 -9.700 28.424 hybrid contribution 0.487 -0.472 -0.184 0.703 sum -23.845 10.561 -9.885 27.890 Atomic orbital electron populations 1.22814 0.79997 1.03440 1.00273 1.88016 1.20302 1.26494 1.95497 1.20704 0.84176 0.86013 1.02556 1.22223 0.92771 1.05597 0.84713 1.21600 0.92368 1.07231 0.99673 1.21962 0.98636 1.01337 0.92920 1.22214 0.81837 1.11636 0.94630 1.16100 0.85926 0.77611 0.79962 1.90940 1.22162 1.50755 1.74993 1.48802 1.10229 1.71004 1.04154 1.22685 0.86490 0.99696 0.93274 1.22125 0.96087 0.99333 0.94547 0.89800 1.21803 0.99847 1.01070 0.96997 1.22431 0.93311 0.97661 0.98993 0.89104 1.20686 0.87085 0.91423 0.97320 1.42357 1.04120 1.09589 1.81509 1.19205 0.92080 0.87659 1.37900 0.91303 1.24727 0.96592 0.97284 1.02375 1.69657 1.08372 1.27724 1.52483 0.86189 0.79254 0.83432 0.77331 1.21714 1.21794 1.20809 1.22562 0.92643 0.99460 0.86439 1.84105 1.16398 1.70076 1.34236 0.89068 0.93606 0.93688 0.91102 0.89670 0.82529 0.81910 0.89581 0.90882 0.92436 0.92725 0.91829 0.96379 0.96127 0.78281 0.93553 0.91160 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.48 10.69 -35.23 -0.38 -3.86 16 3 C 0.14 1.03 6.46 36.00 0.23 1.26 16 4 C 0.00 -0.01 6.94 -35.41 -0.25 -0.26 16 5 C -0.19 -1.97 10.77 -39.89 -0.43 -2.40 16 6 C -0.13 -1.65 10.62 -39.40 -0.42 -2.07 16 7 C -0.05 -0.75 6.97 -36.80 -0.26 -1.00 16 8 C 0.62 10.82 7.88 -12.86 -0.10 10.72 16 9 O -0.51 -10.82 17.13 5.19 0.09 -10.73 16 10 N -0.61 -9.72 3.32 -170.85 -0.57 -10.29 16 11 C 0.10 1.25 6.24 -2.41 -0.02 1.24 16 12 C -0.10 -1.28 3.31 -89.22 -0.30 -1.58 16 13 H 0.08 1.11 7.71 -51.93 -0.40 0.71 16 14 C -0.14 -1.40 8.92 37.16 0.33 -1.06 16 15 C -0.10 -1.69 2.75 -89.22 -0.25 -1.93 16 16 H 0.09 1.43 7.71 -51.93 -0.40 1.03 16 17 C 0.16 3.40 5.37 -4.04 -0.02 3.37 16 18 N -0.73 -19.07 5.21 -59.90 -0.31 -19.38 16 19 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16 23 Si 0.91 23.25 29.55 -169.99 -5.02 18.22 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.11 1.87 6.47 -2.41 -0.02 1.86 16 28 O -0.15 -1.95 7.80 5.00 0.04 -1.91 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.09 1.04 5.55 -51.93 -0.29 0.75 16 37 H 0.07 0.77 7.83 -51.93 -0.41 0.37 16 38 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.02 0.41 8.13 -51.92 -0.42 -0.01 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.38 10.36 7.61 -40.82 -0.31 10.05 16 44 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 46 H 0.10 2.14 7.31 -51.93 -0.38 1.76 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -35.56 382.77 -7.50 -43.06 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.22 Total: 5.52 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.61 Total: 1.86 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.15 Total: -57.94 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.25 Total: -16.49 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.56 -7.50 -43.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754817845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.680 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds