Wall clock time and date at job start Tue Mar 31 2020 16:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99920 * 2 1 4 4 C 1.50695 * 109.47369 * 180.02562 * 3 2 1 5 5 C 1.35137 * 125.61758 * 90.02538 * 4 3 2 6 6 C 1.40360 * 107.11519 * 179.78394 * 5 4 3 7 7 C 1.36538 * 106.70997 * 0.35083 * 6 5 4 8 8 C 1.46660 * 125.98926 * 179.90832 * 7 6 5 9 9 O 1.21694 * 119.99905 * 359.71813 * 8 7 6 10 10 N 1.34774 * 119.99886 * 179.71410 * 8 7 6 11 11 C 1.48140 * 127.84215 * 0.02668 * 10 8 7 12 12 C 1.54390 * 104.61751 * 140.41099 * 11 10 8 13 13 H 1.08999 * 110.34788 * 264.99687 * 12 11 10 14 14 C 1.53009 * 110.34019 * 142.74073 * 12 11 10 15 15 C 1.54283 * 104.96027 * 23.87293 * 12 11 10 16 16 H 1.08994 * 110.34422 * 118.97437 * 15 12 11 17 17 C 1.53004 * 110.34241 * 241.12630 * 15 12 11 18 18 N 1.46499 * 109.47198 * 184.99856 * 17 15 12 19 19 C 1.36939 * 119.99933 * 180.27608 * 18 17 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 17 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 17 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47144 * 90.00258 * 23 21 19 25 25 H 1.48500 * 109.47140 * 210.00775 * 23 21 19 26 26 H 1.48502 * 109.46967 * 330.00206 * 23 21 19 27 27 C 1.48150 * 127.83470 * 180.02562 * 10 8 7 28 28 O 1.33927 * 125.61953 * 270.02523 * 4 3 2 29 29 H 1.08999 * 109.46727 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46984 * 299.99286 * 1 2 3 31 31 H 1.09004 * 109.47304 * 59.99569 * 1 2 3 32 32 H 1.09001 * 109.47247 * 59.99937 * 3 2 1 33 33 H 1.09005 * 109.47157 * 300.00325 * 3 2 1 34 34 H 1.07997 * 126.43929 * 0.02562 * 5 4 3 35 35 H 1.08002 * 126.64413 * 180.22127 * 6 5 4 36 36 H 1.09005 * 110.40726 * 21.63469 * 11 10 8 37 37 H 1.09000 * 110.51305 * 259.24868 * 11 10 8 38 38 H 1.08997 * 109.47047 * 304.46281 * 14 12 11 39 39 H 1.08998 * 109.47070 * 64.46223 * 14 12 11 40 40 H 1.09002 * 109.46776 * 184.46575 * 14 12 11 41 41 H 1.09009 * 109.46730 * 64.99643 * 17 15 12 42 42 H 1.08998 * 109.46846 * 305.00188 * 17 15 12 43 43 H 0.97001 * 119.99790 * 359.97438 * 18 17 15 44 44 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 45 45 H 1.09009 * 110.40416 * 100.80630 * 27 10 8 46 46 H 1.09000 * 110.40871 * 338.37846 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 6 4.2966 1.1251 -1.0995 6 6 5.6240 1.0249 -0.6547 7 6 5.5816 1.0223 0.7101 8 6 6.7375 0.9309 1.6081 9 8 7.8604 0.8427 1.1474 10 7 6.5561 0.9448 2.9435 11 6 5.2782 1.0447 3.6861 12 6 5.4430 0.0766 4.8773 13 1 5.0161 -0.8970 4.6364 14 6 4.7789 0.6549 6.1286 15 6 6.9671 -0.0428 5.0856 16 1 7.2424 0.3088 6.0799 17 6 7.4187 -1.4917 4.8909 18 7 8.8441 -1.6058 5.2089 19 6 9.4749 -2.8165 5.1010 20 1 8.9204 -3.6880 4.7857 21 6 10.8269 -2.9235 5.3967 22 7 11.5025 -1.8613 5.7812 23 14 11.6872 -4.5751 5.2502 24 1 12.2294 -4.7307 3.8766 25 1 12.7992 -4.6428 6.2320 26 1 10.7167 -5.6648 5.5256 27 6 7.5896 0.8636 4.0018 28 8 4.2904 1.1243 1.0877 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.9646 1.1524 -2.1268 35 1 6.5077 0.9600 -1.2722 36 1 4.4463 0.7322 3.0548 37 1 5.1222 2.0629 4.0426 38 1 5.1884 1.6442 6.3329 39 1 3.7040 0.7331 5.9662 40 1 4.9714 -0.0005 6.9780 41 1 7.2525 -1.7879 3.8551 42 1 6.8457 -2.1426 5.5513 43 1 9.3422 -0.8229 5.4916 44 1 12.4472 -1.9362 5.9882 45 1 7.7967 1.8539 4.4076 46 1 8.5018 0.4146 3.6087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754817845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:36 Heat of formation + Delta-G solvation = -68.622450 kcal Electronic energy + Delta-G solvation = -27492.425244 eV Core-core repulsion = 23576.647868 eV Total energy + Delta-G solvation = -3915.777375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.84267 -41.14840 -39.22683 -38.79995 -36.48517 -34.49933 -34.02743 -33.14537 -32.34735 -30.69511 -28.65946 -27.34861 -27.29182 -26.28045 -25.18739 -23.32798 -22.79090 -22.10691 -21.14930 -20.80758 -19.32689 -18.67432 -17.96203 -17.63508 -17.16621 -16.95598 -16.75086 -16.58494 -16.51212 -15.75151 -15.31708 -15.26622 -15.09351 -14.90530 -14.55426 -14.14810 -14.08920 -13.95283 -13.69064 -13.56729 -13.29512 -13.06216 -12.91541 -12.87130 -12.78227 -12.63363 -12.34057 -12.16913 -11.98398 -11.86635 -11.57217 -11.47395 -11.39277 -11.14098 -10.98850 -10.71843 -10.06526 -9.64740 -9.04183 -7.98620 -5.27625 -0.17367 1.12006 1.36034 1.42861 1.46213 1.54012 1.87654 1.98831 2.52750 2.94295 3.32246 3.35794 3.50092 3.61476 3.73161 3.81728 3.83329 4.14485 4.16330 4.20610 4.29797 4.35616 4.42554 4.52453 4.54800 4.56791 4.59807 4.62435 4.68494 4.74490 4.78130 4.87208 4.90346 4.93559 5.02366 5.04782 5.18579 5.24962 5.29068 5.32467 5.43783 5.53102 5.76641 6.11525 6.23849 6.31990 6.80101 7.30026 8.04416 8.28980 9.24877 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.002913 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.666148 B = 9608.782360 C =10053.745359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.140 3.860 4 C 0.008 3.992 5 C -0.191 4.191 6 C -0.126 4.126 7 C -0.084 4.084 8 C 0.608 3.392 9 O -0.568 6.568 10 N -0.612 5.612 11 C 0.104 3.896 12 C -0.091 4.091 13 H 0.078 0.922 14 C -0.133 4.133 15 C -0.094 4.094 16 H 0.100 0.900 17 C 0.165 3.835 18 N -0.742 5.742 19 C -0.249 4.249 20 H 0.070 0.930 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.291 1.291 25 H -0.289 1.289 26 H -0.268 1.268 27 C 0.111 3.889 28 O -0.156 6.156 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.189 0.811 35 H 0.162 0.838 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.059 0.941 41 H -0.004 1.004 42 H 0.028 0.972 43 H 0.376 0.624 44 H 0.252 0.748 45 H 0.094 0.906 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.499 12.011 -9.830 32.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.064 3.936 4 C -0.044 4.044 5 C -0.210 4.210 6 C -0.147 4.147 7 C -0.136 4.136 8 C 0.398 3.602 9 O -0.449 6.449 10 N -0.343 5.343 11 C -0.017 4.017 12 C -0.111 4.111 13 H 0.096 0.904 14 C -0.190 4.190 15 C -0.114 4.114 16 H 0.118 0.882 17 C 0.038 3.962 18 N -0.385 5.385 19 C -0.381 4.381 20 H 0.088 0.912 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.802 3.198 24 H -0.218 1.218 25 H -0.215 1.215 26 H -0.193 1.193 27 C -0.011 4.011 28 O -0.052 6.052 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.137 0.863 34 H 0.207 0.793 35 H 0.180 0.820 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.014 0.986 42 H 0.046 0.954 43 H 0.208 0.792 44 H 0.061 0.939 45 H 0.112 0.888 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.902 11.623 -9.864 31.795 hybrid contribution 1.425 -0.651 -0.204 1.580 sum -26.477 10.971 -10.069 30.377 Atomic orbital electron populations 1.22996 0.78077 1.04099 1.01780 1.87954 1.22419 1.27465 1.95842 1.21014 0.81537 0.85927 1.05084 1.23096 0.94365 1.02890 0.84071 1.21953 0.90827 1.06862 1.01346 1.22229 1.00110 0.99894 0.92469 1.21680 0.82076 1.15360 0.94514 1.16527 0.86265 0.76808 0.80592 1.90886 1.24445 1.53530 1.76059 1.48928 1.11372 1.70133 1.03819 1.22910 0.84897 1.01214 0.92651 1.22100 0.93149 0.99605 0.96273 0.90391 1.21775 1.01096 1.01269 0.94909 1.22330 0.96019 0.94043 0.98990 0.88153 1.20782 0.84613 0.95011 0.95769 1.42542 1.06102 1.08473 1.81392 1.19585 0.92670 0.88741 1.37102 0.91226 1.25581 0.97363 1.00963 1.02745 1.69810 1.08392 1.29774 1.53779 0.85137 0.78136 0.79544 0.76943 1.21808 1.21527 1.19269 1.22447 0.91301 1.00398 0.86931 1.84067 1.15594 1.70314 1.35235 0.88964 0.92421 0.91821 0.89357 0.86335 0.79331 0.82024 0.88833 0.88025 0.91268 0.90272 0.92177 0.98610 0.95439 0.79218 0.93873 0.88826 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.34 10.69 -148.98 -1.59 -7.94 16 3 C 0.14 1.52 6.46 71.23 0.46 1.98 16 4 C 0.01 0.15 6.94 24.97 0.17 0.32 16 5 C -0.19 -3.58 10.77 22.07 0.24 -3.34 16 6 C -0.13 -3.26 10.62 22.39 0.24 -3.02 16 7 C -0.08 -2.52 6.97 24.07 0.17 -2.35 16 8 C 0.61 22.49 7.88 86.44 0.68 23.17 16 9 O -0.57 -25.96 17.13 -4.33 -0.07 -26.04 16 10 N -0.61 -19.95 3.32 -812.65 -2.69 -22.64 16 11 C 0.10 2.41 6.24 86.54 0.54 2.95 16 12 C -0.09 -2.16 3.31 -9.88 -0.03 -2.20 16 13 H 0.08 1.96 7.71 -2.39 -0.02 1.94 16 14 C -0.13 -2.22 8.92 71.99 0.64 -1.58 16 15 C -0.09 -3.05 2.75 -9.89 -0.03 -3.08 16 16 H 0.10 3.09 7.71 -2.39 -0.02 3.07 16 17 C 0.16 7.10 5.37 86.38 0.46 7.57 16 18 N -0.74 -40.16 5.21 -343.44 -1.79 -41.95 16 19 C -0.25 -14.87 9.99 84.03 0.84 -14.03 16 20 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 21 C -0.07 -4.49 5.50 84.86 0.47 -4.02 16 22 N -0.97 -61.65 13.06 21.65 0.28 -61.37 16 23 Si 0.97 48.58 29.55 68.60 2.03 50.60 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 27 C 0.11 3.92 6.47 86.53 0.56 4.48 16 28 O -0.16 -3.78 7.80 -5.02 -0.04 -3.82 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.19 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.16 4.07 8.06 -2.91 -0.02 4.04 16 36 H 0.09 2.07 5.55 -2.38 -0.01 2.06 16 37 H 0.10 1.82 7.83 -2.39 -0.02 1.80 16 38 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.00 -0.19 8.13 -2.38 -0.02 -0.21 16 42 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.38 21.21 7.61 -92.71 -0.71 20.51 16 44 H 0.25 15.52 8.31 -92.71 -0.77 14.74 16 45 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 46 H 0.05 2.33 7.31 -2.39 -0.02 2.32 16 Total: -1.00 -81.46 382.77 3.06 -78.40 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.28 Total: 26.45 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.66 Total: 8.29 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -4.20 Total: -125.96 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -1.71 Total: -37.80 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -81.46 3.06 -78.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754817845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.780 kcal (2) G-P(sol) polarization free energy of solvation -81.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds