Wall clock time and date at job start Tue Mar 31 2020 16:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47351 * 2 1 4 4 C 1.50700 * 109.47164 * 120.00167 * 2 1 3 5 5 O 1.21279 * 119.99782 * 27.61610 * 4 2 1 6 6 N 1.34779 * 119.99903 * 207.88805 * 4 2 1 7 7 C 1.46925 * 120.63192 * 3.76145 * 6 4 2 8 8 C 1.52757 * 109.00670 * 233.58299 * 7 6 4 9 9 C 1.53034 * 109.38282 * 305.58431 * 8 7 6 10 10 C 1.53037 * 109.53885 * 61.24268 * 9 8 7 11 11 C 1.53005 * 109.49996 * 178.68310 * 10 9 8 12 12 O 1.42898 * 109.46820 * 299.83644 * 11 10 9 13 13 N 1.46503 * 109.52561 * 58.59940 * 10 9 8 14 14 C 1.36946 * 119.99666 * 60.15005 * 13 10 9 15 15 H 1.08004 * 119.99854 * 359.97438 * 14 13 10 16 16 C 1.38814 * 119.99730 * 180.02562 * 14 13 10 17 17 N 1.31622 * 119.99503 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00085 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46805 * 90.00076 * 18 16 14 20 20 H 1.48494 * 109.47155 * 209.99787 * 18 16 14 21 21 H 1.48497 * 109.47135 * 330.00129 * 18 16 14 22 22 C 1.46923 * 120.62895 * 184.03704 * 6 4 2 23 23 C 1.50703 * 109.46974 * 240.00220 * 2 1 3 24 24 C 1.34514 * 125.79193 * 120.00538 * 23 2 1 25 25 C 1.41378 * 106.84346 * 179.97438 * 24 23 2 26 26 C 1.34523 * 106.84097 * 359.97438 * 25 24 23 27 27 O 1.34302 * 108.41683 * 359.73830 * 26 25 24 28 28 H 1.09003 * 109.46945 * 304.23641 * 1 2 3 29 29 H 1.09000 * 109.47208 * 64.23317 * 1 2 3 30 30 H 1.09003 * 109.47433 * 184.23466 * 1 2 3 31 31 H 1.09005 * 109.58379 * 353.41161 * 7 6 4 32 32 H 1.09000 * 109.58706 * 113.83919 * 7 6 4 33 33 H 1.09008 * 109.56729 * 185.55055 * 8 7 6 34 34 H 1.09007 * 109.38819 * 65.51317 * 8 7 6 35 35 H 1.08998 * 109.46313 * 301.22128 * 9 8 7 36 36 H 1.09004 * 109.46446 * 181.26130 * 9 8 7 37 37 H 1.08996 * 109.46664 * 59.83659 * 11 10 9 38 38 H 1.09002 * 109.46980 * 179.83952 * 11 10 9 39 39 H 0.96705 * 113.99691 * 179.97438 * 12 11 10 40 40 H 0.96998 * 120.00118 * 240.14751 * 13 10 9 41 41 H 0.96997 * 119.99324 * 179.97438 * 17 16 14 42 42 H 1.09007 * 109.58633 * 246.15517 * 22 6 4 43 43 H 1.09002 * 109.59141 * 6.43816 * 22 6 4 44 44 H 1.07998 * 126.57588 * 359.95655 * 24 23 2 45 45 H 1.07997 * 126.58408 * 180.02562 * 25 24 23 46 46 H 1.08000 * 125.79135 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3570 -1.5731 1.7507 6 7 3.2296 -0.3834 1.7558 7 6 4.0195 0.7188 1.1901 8 6 5.4204 0.2078 0.8586 9 6 6.0359 -0.4317 2.1052 10 6 5.1787 -1.6198 2.5472 11 6 5.8126 -2.2786 3.7741 12 8 7.1243 -2.7390 3.4430 13 7 5.0943 -2.5952 1.4573 14 6 6.2340 -3.1770 0.9695 15 1 7.1950 -2.9166 1.3880 16 6 6.1541 -4.1008 -0.0636 17 7 7.2495 -4.6596 -0.5328 18 14 4.4920 -4.5506 -0.7879 19 1 4.1790 -3.6353 -1.9146 20 1 4.5302 -5.9501 -1.2829 21 1 3.4456 -4.4239 0.2581 22 6 3.7724 -1.1261 2.9014 23 6 2.0323 -0.7104 -1.2305 24 6 2.8089 -0.1720 -2.1878 25 6 3.0386 -1.1850 -3.1468 26 6 2.3891 -2.2822 -2.7180 27 8 1.7864 -1.9906 -1.5538 28 1 -0.3633 0.5782 0.8496 29 1 -0.3633 0.4467 -0.9255 30 1 -0.3634 -1.0249 0.0759 31 1 3.5402 1.0828 0.2812 32 1 4.0911 1.5278 1.9171 33 1 6.0442 1.0395 0.5306 34 1 5.3559 -0.5345 0.0629 35 1 6.0779 0.3044 2.9079 36 1 7.0442 -0.7767 1.8762 37 1 5.8762 -1.5523 4.5843 38 1 5.2002 -3.1230 4.0903 39 1 7.5870 -3.1682 4.1757 40 1 4.2312 -2.8288 1.0813 41 1 7.1936 -5.3054 -1.2544 42 1 3.8236 -0.4705 3.7708 43 1 3.1289 -1.9775 3.1231 44 1 3.1846 0.8401 -2.2180 45 1 3.6240 -1.0956 -4.0499 46 1 2.3605 -3.2368 -3.2222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755087163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:55 Heat of formation + Delta-G solvation = -38.593410 kcal Electronic energy + Delta-G solvation = -30307.858934 eV Core-core repulsion = 26393.383716 eV Total energy + Delta-G solvation = -3914.475218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.43334 -40.20372 -38.08558 -35.80499 -34.32198 -33.68894 -32.63278 -31.94632 -31.40532 -29.33151 -28.48454 -25.99574 -25.46018 -23.73890 -23.05192 -21.87948 -21.56056 -20.77818 -19.03990 -18.34187 -17.74076 -17.40549 -16.96775 -16.40628 -15.98858 -15.41868 -15.21850 -14.84065 -14.36428 -14.04346 -13.94810 -13.79302 -13.49243 -13.30973 -12.89480 -12.79712 -12.60607 -12.52717 -12.41220 -12.25837 -12.15449 -11.91735 -11.61320 -11.55986 -11.17732 -10.79783 -10.75286 -10.43010 -10.37976 -10.16099 -9.95679 -9.77259 -9.54816 -9.43379 -8.94101 -8.77706 -8.37494 -8.15562 -7.11936 -5.56102 -2.90779 1.86866 2.64587 2.86064 3.09393 3.24448 3.49787 3.54800 3.61403 4.51950 4.61786 4.75051 4.86681 4.89147 4.90780 5.10557 5.17575 5.24185 5.31029 5.35034 5.45685 5.56898 5.62107 5.67711 5.69640 5.75069 5.83633 5.86139 5.96614 5.99823 6.02839 6.05202 6.08255 6.14064 6.27055 6.29783 6.36976 6.65700 6.67419 6.72837 6.94908 7.06679 7.32792 7.55166 8.28142 8.29496 8.39495 8.65514 9.43615 10.12914 10.29873 11.61650 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011323 B = 0.007616 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.172856 B = 3675.361764 C = 5014.725173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.027 4.027 3 H 0.118 0.882 4 C 0.520 3.480 5 O -0.533 6.533 6 N -0.596 5.596 7 C 0.106 3.894 8 C -0.129 4.129 9 C -0.115 4.115 10 C 0.195 3.805 11 C 0.076 3.924 12 O -0.533 6.533 13 N -0.730 5.730 14 C -0.212 4.212 15 H 0.115 0.885 16 C -0.002 4.002 17 N -0.939 5.939 18 Si 0.859 3.141 19 H -0.269 1.269 20 H -0.299 1.299 21 H -0.282 1.282 22 C 0.112 3.888 23 C -0.012 4.012 24 C -0.192 4.192 25 C -0.214 4.214 26 C -0.020 4.020 27 O -0.166 6.166 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.036 0.964 39 H 0.355 0.645 40 H 0.360 0.640 41 H 0.253 0.747 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 14.358 2.200 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 H 0.136 0.864 4 C 0.307 3.693 5 O -0.410 6.410 6 N -0.328 5.328 7 C -0.017 4.017 8 C -0.167 4.167 9 C -0.155 4.155 10 C 0.102 3.898 11 C -0.005 4.005 12 O -0.335 6.335 13 N -0.372 5.372 14 C -0.342 4.342 15 H 0.133 0.867 16 C -0.196 4.196 17 N -0.589 5.589 18 Si 0.691 3.309 19 H -0.195 1.195 20 H -0.227 1.227 21 H -0.208 1.208 22 C -0.011 4.011 23 C -0.062 4.062 24 C -0.211 4.211 25 C -0.233 4.233 26 C -0.089 4.089 27 O -0.061 6.061 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.199 0.801 40 H 0.193 0.807 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.165 0.835 45 H 0.165 0.835 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.860 13.886 2.020 17.150 hybrid contribution -0.627 -0.770 -0.273 1.030 sum -10.488 13.115 1.748 16.883 Atomic orbital electron populations 1.21684 0.91257 1.04147 1.02184 1.19868 0.98422 0.98613 0.87944 0.86428 1.20306 0.81155 0.83242 0.84589 1.90688 1.56318 1.32292 1.61674 1.47913 1.18204 1.34010 1.32704 1.21803 0.93290 0.88344 0.98217 1.21724 0.93633 1.00758 1.00563 1.21820 1.01548 0.96245 0.95844 1.19908 0.91143 0.89999 0.88775 1.22607 0.85400 0.96288 0.96215 1.86905 1.27921 1.79585 1.39126 1.42795 1.06363 1.48331 1.39728 1.19411 0.87719 1.15935 1.11090 0.86727 1.24621 0.95513 0.99925 0.99491 1.69699 1.25606 1.33149 1.30470 0.86922 0.86100 0.77561 0.80335 1.19502 1.22661 1.20831 1.21764 0.95229 0.96748 0.87362 1.21549 1.03425 0.83268 0.97998 1.21464 1.02736 1.01104 0.95788 1.21690 1.05382 0.93477 1.02786 1.23954 0.98347 1.00430 0.86128 1.84054 1.59752 1.27332 1.35004 0.91567 0.91495 0.90757 0.90371 0.91623 0.91839 0.89516 0.93784 0.90064 0.95625 0.94535 0.80057 0.80676 0.93678 0.91133 0.89009 0.83502 0.83502 0.78702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.83 37.16 0.33 -1.29 16 2 C -0.03 -0.37 2.34 -92.92 -0.22 -0.59 16 3 H 0.12 1.18 6.10 -51.93 -0.32 0.87 16 4 C 0.52 8.81 6.76 -10.98 -0.07 8.74 16 5 O -0.53 -10.89 15.47 5.56 0.09 -10.81 16 6 N -0.60 -9.36 2.87 -173.03 -0.50 -9.85 16 7 C 0.11 1.36 6.23 -3.94 -0.02 1.33 16 8 C -0.13 -2.01 5.91 -26.84 -0.16 -2.17 16 9 C -0.11 -1.97 4.39 -26.69 -0.12 -2.08 16 10 C 0.19 3.64 0.68 -131.70 -0.09 3.55 16 11 C 0.08 1.33 6.08 37.16 0.23 1.56 16 12 O -0.53 -10.40 9.96 -35.23 -0.35 -10.75 16 13 N -0.73 -17.33 4.03 -47.11 -0.19 -17.52 16 14 C -0.21 -5.92 8.77 -15.05 -0.13 -6.05 16 15 H 0.12 3.45 5.54 -52.48 -0.29 3.16 16 16 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 17 N -0.94 -30.17 13.97 55.49 0.78 -29.39 16 18 Si 0.86 22.92 27.59 -169.99 -4.69 18.23 16 19 H -0.27 -6.62 4.80 56.52 0.27 -6.35 16 20 H -0.30 -8.25 7.11 56.52 0.40 -7.85 16 21 H -0.28 -7.77 6.52 56.52 0.37 -7.40 16 22 C 0.11 1.84 5.13 -3.71 -0.02 1.82 16 23 C -0.01 -0.19 5.74 -35.62 -0.20 -0.39 16 24 C -0.19 -2.79 10.63 -39.70 -0.42 -3.21 16 25 C -0.21 -3.34 10.91 -39.70 -0.43 -3.77 16 26 C -0.02 -0.35 9.82 29.42 0.29 -0.06 16 27 O -0.17 -3.09 10.65 5.70 0.06 -3.03 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 31 H 0.08 0.86 5.25 -51.93 -0.27 0.58 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.09 1.73 7.53 -51.93 -0.39 1.34 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.65 6.84 -51.93 -0.36 1.30 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.35 5.23 9.12 45.56 0.42 5.65 16 40 H 0.36 9.16 5.51 -40.82 -0.22 8.93 16 41 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.70 7.03 -51.93 -0.37 1.34 16 44 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 45 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 46 H 0.20 2.88 8.02 -52.49 -0.42 2.46 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -36.70 358.89 -6.69 -43.39 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -6.15 Total: 17.10 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.15 Total: -2.77 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.09 Total: -56.77 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.20 Total: -24.60 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.69 Total: 18.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.70 -6.69 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755087163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.799 kcal (2) G-P(sol) polarization free energy of solvation -36.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds