Wall clock time and date at job start Tue Mar 31 2020 16:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47351 * 2 1 4 4 C 1.50700 * 109.47164 * 120.00167 * 2 1 3 5 5 O 1.21279 * 119.99782 * 27.61610 * 4 2 1 6 6 N 1.34779 * 119.99903 * 207.88805 * 4 2 1 7 7 C 1.46925 * 120.63192 * 3.76145 * 6 4 2 8 8 C 1.52757 * 109.00670 * 233.58299 * 7 6 4 9 9 C 1.53034 * 109.38282 * 305.58431 * 8 7 6 10 10 C 1.53037 * 109.53885 * 61.24268 * 9 8 7 11 11 C 1.53005 * 109.49996 * 178.68310 * 10 9 8 12 12 O 1.42898 * 109.46820 * 299.83644 * 11 10 9 13 13 N 1.46503 * 109.52561 * 58.59940 * 10 9 8 14 14 C 1.36946 * 119.99666 * 60.15005 * 13 10 9 15 15 H 1.08004 * 119.99854 * 359.97438 * 14 13 10 16 16 C 1.38814 * 119.99730 * 180.02562 * 14 13 10 17 17 N 1.31622 * 119.99503 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00085 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46805 * 90.00076 * 18 16 14 20 20 H 1.48494 * 109.47155 * 209.99787 * 18 16 14 21 21 H 1.48497 * 109.47135 * 330.00129 * 18 16 14 22 22 C 1.46923 * 120.62895 * 184.03704 * 6 4 2 23 23 C 1.50703 * 109.46974 * 240.00220 * 2 1 3 24 24 C 1.34514 * 125.79193 * 120.00538 * 23 2 1 25 25 C 1.41378 * 106.84346 * 179.97438 * 24 23 2 26 26 C 1.34523 * 106.84097 * 359.97438 * 25 24 23 27 27 O 1.34302 * 108.41683 * 359.73830 * 26 25 24 28 28 H 1.09003 * 109.46945 * 304.23641 * 1 2 3 29 29 H 1.09000 * 109.47208 * 64.23317 * 1 2 3 30 30 H 1.09003 * 109.47433 * 184.23466 * 1 2 3 31 31 H 1.09005 * 109.58379 * 353.41161 * 7 6 4 32 32 H 1.09000 * 109.58706 * 113.83919 * 7 6 4 33 33 H 1.09008 * 109.56729 * 185.55055 * 8 7 6 34 34 H 1.09007 * 109.38819 * 65.51317 * 8 7 6 35 35 H 1.08998 * 109.46313 * 301.22128 * 9 8 7 36 36 H 1.09004 * 109.46446 * 181.26130 * 9 8 7 37 37 H 1.08996 * 109.46664 * 59.83659 * 11 10 9 38 38 H 1.09002 * 109.46980 * 179.83952 * 11 10 9 39 39 H 0.96705 * 113.99691 * 179.97438 * 12 11 10 40 40 H 0.96998 * 120.00118 * 240.14751 * 13 10 9 41 41 H 0.96997 * 119.99324 * 179.97438 * 17 16 14 42 42 H 1.09007 * 109.58633 * 246.15517 * 22 6 4 43 43 H 1.09002 * 109.59141 * 6.43816 * 22 6 4 44 44 H 1.07998 * 126.57588 * 359.95655 * 24 23 2 45 45 H 1.07997 * 126.58408 * 180.02562 * 25 24 23 46 46 H 1.08000 * 125.79135 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3570 -1.5731 1.7507 6 7 3.2296 -0.3834 1.7558 7 6 4.0195 0.7188 1.1901 8 6 5.4204 0.2078 0.8586 9 6 6.0359 -0.4317 2.1052 10 6 5.1787 -1.6198 2.5472 11 6 5.8126 -2.2786 3.7741 12 8 7.1243 -2.7390 3.4430 13 7 5.0943 -2.5952 1.4573 14 6 6.2340 -3.1770 0.9695 15 1 7.1950 -2.9166 1.3880 16 6 6.1541 -4.1008 -0.0636 17 7 7.2495 -4.6596 -0.5328 18 14 4.4920 -4.5506 -0.7879 19 1 4.1790 -3.6353 -1.9146 20 1 4.5302 -5.9501 -1.2829 21 1 3.4456 -4.4239 0.2581 22 6 3.7724 -1.1261 2.9014 23 6 2.0323 -0.7104 -1.2305 24 6 2.8089 -0.1720 -2.1878 25 6 3.0386 -1.1850 -3.1468 26 6 2.3891 -2.2822 -2.7180 27 8 1.7864 -1.9906 -1.5538 28 1 -0.3633 0.5782 0.8496 29 1 -0.3633 0.4467 -0.9255 30 1 -0.3634 -1.0249 0.0759 31 1 3.5402 1.0828 0.2812 32 1 4.0911 1.5278 1.9171 33 1 6.0442 1.0395 0.5306 34 1 5.3559 -0.5345 0.0629 35 1 6.0779 0.3044 2.9079 36 1 7.0442 -0.7767 1.8762 37 1 5.8762 -1.5523 4.5843 38 1 5.2002 -3.1230 4.0903 39 1 7.5870 -3.1682 4.1757 40 1 4.2312 -2.8288 1.0813 41 1 7.1936 -5.3054 -1.2544 42 1 3.8236 -0.4705 3.7708 43 1 3.1289 -1.9775 3.1231 44 1 3.1846 0.8401 -2.2180 45 1 3.6240 -1.0956 -4.0499 46 1 2.3605 -3.2368 -3.2222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755087163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:54 Heat of formation + Delta-G solvation = -67.037879 kcal Electronic energy + Delta-G solvation = -30309.092379 eV Core-core repulsion = 26393.383716 eV Total energy + Delta-G solvation = -3915.708663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.63733 -41.48432 -39.51436 -37.19710 -35.75586 -35.16897 -33.84295 -33.68413 -32.82538 -31.17425 -29.59967 -27.25860 -26.69785 -25.38539 -24.63101 -23.15453 -22.75236 -21.99464 -20.37373 -19.86238 -19.61761 -18.60028 -18.15781 -17.97581 -17.27687 -16.71426 -16.58275 -16.43255 -15.97456 -15.52260 -15.39003 -15.05179 -14.89467 -14.57465 -14.42813 -14.27661 -13.88691 -13.81724 -13.75122 -13.65349 -13.38545 -13.12178 -12.94130 -12.76993 -12.65222 -12.56059 -12.46865 -12.14324 -11.79127 -11.72900 -11.54479 -11.37000 -11.00818 -10.79374 -10.76921 -10.57404 -9.61830 -9.39155 -9.18653 -7.87597 -5.16820 0.64727 1.31716 1.33259 1.40587 1.43672 1.71215 1.94404 2.12280 2.54244 3.34600 3.39936 3.49897 3.58073 3.64452 3.85606 3.89647 4.05951 4.11745 4.16477 4.21474 4.26041 4.35461 4.47071 4.52475 4.60419 4.64748 4.73286 4.73437 4.79490 4.86266 4.90128 4.94914 4.98172 4.99368 5.08997 5.23190 5.28638 5.49701 5.57243 5.58856 5.68785 6.08623 6.13979 6.36597 6.41679 7.05915 7.08867 7.27092 7.97529 8.12587 9.33765 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011323 B = 0.007616 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.172856 B = 3675.361764 C = 5014.725173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.023 4.023 3 H 0.163 0.837 4 C 0.510 3.490 5 O -0.580 6.580 6 N -0.597 5.597 7 C 0.106 3.894 8 C -0.126 4.126 9 C -0.108 4.108 10 C 0.179 3.821 11 C 0.074 3.926 12 O -0.566 6.566 13 N -0.735 5.735 14 C -0.167 4.167 15 H 0.094 0.906 16 C -0.072 4.072 17 N -0.989 5.989 18 Si 0.919 3.081 19 H -0.243 1.243 20 H -0.315 1.315 21 H -0.300 1.300 22 C 0.116 3.884 23 C -0.028 4.028 24 C -0.185 4.185 25 C -0.218 4.218 26 C -0.055 4.055 27 O -0.199 6.199 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.039 0.961 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.024 0.976 39 H 0.375 0.625 40 H 0.350 0.650 41 H 0.246 0.754 42 H 0.115 0.885 43 H 0.063 0.937 44 H 0.184 0.816 45 H 0.166 0.834 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 18.671 3.079 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.044 4.044 3 H 0.180 0.820 4 C 0.299 3.701 5 O -0.460 6.460 6 N -0.328 5.328 7 C -0.015 4.015 8 C -0.164 4.164 9 C -0.147 4.147 10 C 0.089 3.911 11 C -0.006 4.006 12 O -0.371 6.371 13 N -0.376 5.376 14 C -0.298 4.298 15 H 0.111 0.889 16 C -0.261 4.261 17 N -0.643 5.643 18 Si 0.751 3.249 19 H -0.167 1.167 20 H -0.243 1.243 21 H -0.228 1.228 22 C -0.007 4.007 23 C -0.078 4.078 24 C -0.204 4.204 25 C -0.237 4.237 26 C -0.122 4.122 27 O -0.096 6.096 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.222 0.778 40 H 0.182 0.818 41 H 0.055 0.945 42 H 0.133 0.867 43 H 0.082 0.918 44 H 0.202 0.798 45 H 0.183 0.817 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.682 18.275 2.934 21.370 hybrid contribution -0.313 -2.036 -0.390 2.097 sum -10.995 16.239 2.543 19.775 Atomic orbital electron populations 1.21674 0.90391 1.02593 1.04193 1.20092 0.99230 0.99898 0.85151 0.81984 1.20978 0.81238 0.82785 0.85131 1.90667 1.57836 1.34335 1.63144 1.48091 1.18062 1.34306 1.32327 1.22072 0.90850 0.88019 1.00571 1.21670 0.96231 1.00329 0.98180 1.21713 0.98781 0.96249 0.97997 1.20402 0.93546 0.89624 0.87563 1.22615 0.84275 0.96968 0.96749 1.86816 1.28969 1.80127 1.41232 1.42871 1.04344 1.49295 1.41071 1.19357 0.88250 1.13453 1.08777 0.88885 1.25169 0.97912 1.01679 1.01377 1.69847 1.27401 1.35077 1.31987 0.86007 0.82144 0.76772 0.79974 1.16747 1.24336 1.22767 1.21709 0.92714 0.97043 0.89262 1.22147 1.03908 0.82602 0.99157 1.21901 1.01537 1.02374 0.94606 1.22107 1.04685 0.93376 1.03538 1.24351 0.99667 1.01726 0.86497 1.84032 1.60672 1.29130 1.35803 0.89692 0.89253 0.94135 0.88022 0.87207 0.89067 0.94452 0.89612 0.94021 0.90878 0.95807 0.77788 0.81839 0.94451 0.86728 0.91834 0.79833 0.81675 0.78011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.83 71.98 0.64 -2.19 16 2 C -0.02 -0.55 2.34 -12.29 -0.03 -0.58 16 3 H 0.16 2.31 6.10 -2.39 -0.01 2.30 16 4 C 0.51 16.25 6.76 87.66 0.59 16.85 16 5 O -0.58 -23.68 15.47 -3.03 -0.05 -23.72 16 6 N -0.60 -16.74 2.87 -819.74 -2.36 -19.09 16 7 C 0.11 2.13 6.23 86.22 0.54 2.67 16 8 C -0.13 -3.49 5.91 30.52 0.18 -3.31 16 9 C -0.11 -3.37 4.39 30.62 0.13 -3.24 16 10 C 0.18 6.37 0.68 3.68 0.00 6.37 16 11 C 0.07 2.46 6.08 71.98 0.44 2.89 16 12 O -0.57 -21.82 9.96 -148.98 -1.48 -23.30 16 13 N -0.73 -35.07 4.03 -302.97 -1.22 -36.29 16 14 C -0.17 -9.57 8.77 84.03 0.74 -8.83 16 15 H 0.09 5.77 5.54 -2.91 -0.02 5.75 16 16 C -0.07 -4.48 5.50 84.86 0.47 -4.02 16 17 N -0.99 -66.04 13.97 21.65 0.30 -65.74 16 18 Si 0.92 50.05 27.59 68.60 1.89 51.94 16 19 H -0.24 -11.96 4.80 99.48 0.48 -11.49 16 20 H -0.31 -17.77 7.11 99.48 0.71 -17.06 16 21 H -0.30 -17.00 6.52 99.48 0.65 -16.35 16 22 C 0.12 3.49 5.13 86.36 0.44 3.93 16 23 C -0.03 -0.84 5.74 24.83 0.14 -0.70 16 24 C -0.19 -4.81 10.63 22.19 0.24 -4.58 16 25 C -0.22 -6.42 10.91 22.19 0.24 -6.18 16 26 C -0.06 -1.86 9.82 66.97 0.66 -1.20 16 27 O -0.20 -7.43 10.65 -2.50 -0.03 -7.46 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.15 7.70 -2.39 -0.02 1.13 16 31 H 0.10 1.59 5.25 -2.38 -0.01 1.58 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.04 1.42 7.53 -2.38 -0.02 1.40 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.64 6.84 -2.38 -0.02 1.62 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.37 10.82 9.12 -74.05 -0.68 10.14 16 40 H 0.35 18.07 5.51 -92.71 -0.51 17.56 16 41 H 0.25 16.01 8.31 -92.71 -0.77 15.23 16 42 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 43 H 0.06 2.31 7.03 -2.39 -0.02 2.29 16 44 H 0.18 3.23 8.06 -2.91 -0.02 3.20 16 45 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 46 H 0.20 6.06 8.02 -2.91 -0.02 6.04 16 Total: -1.00 -87.07 358.89 2.02 -85.05 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.46 Total: 40.72 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.42 Total: -2.11 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -3.27 Total: -121.12 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -1.56 Total: -54.49 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 1.89 Total: 51.94 kcal Total: -87.07 2.02 -85.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755087163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.016 kcal (2) G-P(sol) polarization free energy of solvation -87.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds