Wall clock time and date at job start Tue Mar 31 2020 16:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.63879 * 2 1 4 4 C 1.54320 * 110.72353 * 123.13895 * 2 1 3 5 5 N 1.47024 * 107.40267 * 140.48056 * 4 2 1 6 6 C 1.34778 * 125.64392 * 181.10339 * 5 4 2 7 7 O 1.21283 * 119.99244 * 175.03159 * 6 5 4 8 8 C 1.50694 * 120.00609 * 355.02481 * 6 5 4 9 9 C 1.53001 * 109.47117 * 298.53545 * 8 6 5 10 10 C 1.53003 * 109.46828 * 58.53278 * 8 6 5 11 11 C 1.52998 * 109.47264 * 178.53170 * 8 6 5 12 12 C 1.53000 * 109.47104 * 186.70621 * 11 8 6 13 13 F 1.39902 * 109.46624 * 66.28144 * 12 11 8 14 14 F 1.39902 * 109.47202 * 186.27723 * 12 11 8 15 15 F 1.39899 * 109.47508 * 306.28312 * 12 11 8 16 16 C 1.47743 * 108.52907 * 1.18029 * 5 4 2 17 17 C 1.54904 * 104.84151 * 335.75332 * 16 5 4 18 18 H 1.09001 * 111.00377 * 155.16421 * 17 16 5 19 19 N 1.46501 * 111.03963 * 279.00238 * 17 16 5 20 20 C 1.36938 * 120.00241 * 267.22120 * 19 17 16 21 21 H 1.07996 * 119.99670 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00156 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00061 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99984 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46643 * 60.00285 * 24 22 20 26 26 H 1.48496 * 109.47120 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47098 * 300.00631 * 24 22 20 28 28 H 1.09004 * 109.47281 * 298.31040 * 1 2 3 29 29 H 1.08992 * 109.47542 * 58.31563 * 1 2 3 30 30 H 1.09008 * 109.46920 * 178.31481 * 1 2 3 31 31 H 1.09006 * 109.88608 * 259.97688 * 4 2 1 32 32 H 1.09006 * 109.88523 * 20.98349 * 4 2 1 33 33 H 1.09002 * 109.47253 * 51.77883 * 9 8 6 34 34 H 1.09002 * 109.47240 * 171.77449 * 9 8 6 35 35 H 1.08994 * 109.46946 * 291.77602 * 9 8 6 36 36 H 1.09000 * 109.46863 * 62.25920 * 10 8 6 37 37 H 1.08997 * 109.47239 * 182.25261 * 10 8 6 38 38 H 1.08995 * 109.47445 * 302.25786 * 10 8 6 39 39 H 1.08998 * 109.47598 * 306.71242 * 11 8 6 40 40 H 1.09002 * 109.46718 * 66.71324 * 11 8 6 41 41 H 1.08994 * 110.28890 * 216.94485 * 16 5 4 42 42 H 1.09007 * 110.52466 * 94.67904 * 16 5 4 43 43 H 0.97004 * 119.99932 * 87.20836 * 19 17 16 44 44 H 0.96993 * 120.00204 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7890 1.2086 5 7 3.2439 -1.5521 0.7443 6 6 3.9886 -2.3845 1.4985 7 8 4.8775 -3.0331 0.9883 8 6 3.7171 -2.5094 2.9755 9 6 3.9319 -1.1530 3.6500 10 6 2.2721 -2.9634 3.1917 11 6 4.6716 -3.5386 3.5843 12 6 4.2880 -3.7889 5.0441 13 9 3.0343 -4.4074 5.0973 14 9 5.2430 -4.6185 5.6416 15 9 4.2359 -2.5697 5.7283 16 6 3.4633 -1.2509 -0.6854 17 6 2.0790 -0.7975 -1.2124 18 1 2.1850 -0.1554 -2.0868 19 7 1.2266 -1.9509 -1.5117 20 6 1.2018 -2.4740 -2.7769 21 1 1.8103 -2.0361 -3.5543 22 6 0.3946 -3.5671 -3.0603 23 7 -0.3474 -4.1005 -2.1131 24 14 0.3603 -4.2803 -4.7865 25 1 1.7235 -4.7342 -5.1617 26 1 -0.5736 -5.4341 -4.8269 27 1 -0.0957 -3.2399 -5.7429 28 1 -0.3634 0.4874 0.9048 29 1 -0.3634 0.5397 -0.8744 30 1 -0.3633 -1.0273 -0.0302 31 1 2.3741 -0.0989 1.9979 32 1 1.3121 -1.4711 1.5819 33 1 3.3606 -0.3898 3.1214 34 1 3.5969 -1.2052 4.6859 35 1 4.9912 -0.8976 3.6231 36 1 2.1299 -3.9477 2.7458 37 1 2.0636 -3.0151 4.2603 38 1 1.5934 -2.2508 2.7232 39 1 4.6039 -4.4721 3.0256 40 1 5.6926 -3.1599 3.5367 41 1 3.7960 -2.1446 -1.2132 42 1 4.1937 -0.4498 -0.7995 43 1 0.6799 -2.3441 -0.8135 44 1 -0.9111 -4.8646 -2.3110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755119814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:42 Heat of formation + Delta-G solvation = -160.912924 kcal Electronic energy + Delta-G solvation = -29631.826987 eV Core-core repulsion = 25170.190856 eV Total energy + Delta-G solvation = -4461.636131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.34624 -47.80166 -47.76095 -40.38171 -37.92303 -35.84018 -33.96817 -32.28348 -30.63890 -29.70598 -27.76232 -27.48319 -26.24206 -24.37438 -23.85464 -22.79230 -20.99629 -19.47189 -19.09716 -18.72767 -18.42698 -17.46516 -17.02019 -16.14159 -16.03311 -15.21863 -15.03714 -14.86019 -14.61380 -14.56752 -14.27632 -14.18947 -13.91742 -13.89671 -13.66852 -13.64029 -13.20507 -12.98072 -12.59721 -12.43759 -12.26435 -12.14618 -11.91201 -11.76297 -11.46313 -11.32326 -11.15723 -11.07115 -11.03659 -10.90229 -10.68605 -10.39612 -10.27517 -9.95366 -9.66242 -9.41864 -9.03434 -8.24586 -7.03784 -5.83588 -3.12795 2.59443 2.85399 3.23523 3.41283 3.46656 3.46739 3.73177 3.87679 3.95186 4.42897 4.53407 4.65452 4.69141 4.83325 4.93580 5.04518 5.27174 5.32709 5.39178 5.51227 5.53165 5.62818 5.63506 5.67212 5.70568 5.79699 5.84858 5.93934 6.10186 6.15502 6.20824 6.26705 6.32906 6.34270 6.50315 6.65557 6.76245 6.89914 7.64337 7.86319 8.34435 8.41121 9.46501 10.00584 10.35249 11.38590 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.003749 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.015303 B = 7467.537388 C = 8077.524868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.079 0.921 4 C 0.091 3.909 5 N -0.597 5.597 6 C 0.542 3.458 7 O -0.546 6.546 8 C -0.076 4.076 9 C -0.170 4.170 10 C -0.178 4.178 11 C -0.143 4.143 12 C 0.455 3.545 13 F -0.177 7.177 14 F -0.186 7.186 15 F -0.179 7.179 16 C 0.077 3.923 17 C 0.171 3.829 18 H 0.074 0.926 19 N -0.707 5.707 20 C -0.246 4.246 21 H 0.071 0.929 22 C -0.007 4.007 23 N -0.930 5.930 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.386 0.614 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.432 7.775 15.111 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.097 0.903 4 C -0.031 4.031 5 N -0.328 5.328 6 C 0.330 3.670 7 O -0.424 6.424 8 C -0.079 4.079 9 C -0.227 4.227 10 C -0.234 4.234 11 C -0.182 4.182 12 C 0.401 3.599 13 F -0.159 7.159 14 F -0.167 7.167 15 F -0.161 7.161 16 C -0.049 4.049 17 C 0.058 3.942 18 H 0.092 0.908 19 N -0.347 5.347 20 C -0.377 4.377 21 H 0.089 0.911 22 C -0.204 4.204 23 N -0.578 5.578 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.221 0.779 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.921 7.296 14.718 17.825 hybrid contribution -0.185 -0.719 -0.481 0.884 sum 6.737 6.577 14.237 17.068 Atomic orbital electron populations 1.21627 0.93412 1.03465 1.00607 1.22550 0.97133 0.98568 0.95320 0.90252 1.22635 0.88298 0.94806 0.97349 1.48251 1.29264 1.43565 1.11768 1.19656 0.81446 0.78649 0.87259 1.90692 1.33055 1.44644 1.74026 1.20603 0.97256 0.96715 0.93375 1.22532 1.03015 0.94626 1.02528 1.22648 0.93362 1.03499 1.03930 1.22744 1.02669 1.04089 0.88691 1.20610 0.74641 0.73792 0.90883 1.93160 1.42389 1.83250 1.97052 1.93186 1.64434 1.72959 1.86122 1.93079 1.96122 1.44085 1.82788 1.23407 1.00457 1.00879 0.80108 1.21365 0.88574 0.89917 0.94319 0.90785 1.42318 1.49405 1.32671 1.10296 1.19191 1.21148 1.09987 0.87387 0.91091 1.24720 0.99387 0.98606 0.97646 1.69634 1.30675 1.25666 1.31811 0.86275 0.77332 0.78483 0.84128 1.21221 1.21705 1.21202 0.93771 0.92241 0.90921 0.91458 0.90207 0.90758 0.89319 0.91950 0.91161 0.90329 0.89800 0.86317 0.86799 0.89965 0.92828 0.77877 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.80 37.16 0.33 -1.59 16 2 C -0.12 -1.62 3.42 -88.79 -0.30 -1.92 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.09 1.22 4.92 -3.07 -0.02 1.21 16 5 N -0.60 -9.65 3.32 -170.26 -0.57 -10.22 16 6 C 0.54 9.04 6.58 -10.99 -0.07 8.96 16 7 O -0.55 -11.06 16.15 5.55 0.09 -10.97 16 8 C -0.08 -0.96 0.52 -155.66 -0.08 -1.04 16 9 C -0.17 -1.73 7.63 37.16 0.28 -1.45 16 10 C -0.18 -2.20 7.10 37.16 0.26 -1.94 16 11 C -0.14 -1.67 3.91 -26.73 -0.10 -1.78 16 12 C 0.45 4.96 2.88 37.16 0.11 5.07 16 13 F -0.18 -2.07 14.00 2.25 0.03 -2.04 16 14 F -0.19 -2.11 17.32 2.25 0.04 -2.07 16 15 F -0.18 -1.86 13.70 2.25 0.03 -1.83 16 16 C 0.08 1.36 6.65 -2.36 -0.02 1.35 16 17 C 0.17 3.07 3.47 -65.78 -0.23 2.84 16 18 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 19 N -0.71 -16.31 4.56 -51.35 -0.23 -16.54 16 20 C -0.25 -6.50 9.96 -15.06 -0.15 -6.65 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 24 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.27 6.34 -51.92 -0.33 0.94 16 31 H 0.07 0.72 5.37 -51.93 -0.28 0.44 16 32 H 0.08 1.11 5.06 -51.93 -0.26 0.84 16 33 H 0.07 0.72 4.69 -51.93 -0.24 0.48 16 34 H 0.09 0.82 5.47 -51.93 -0.28 0.53 16 35 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.86 5.70 -51.93 -0.30 0.56 16 38 H 0.08 1.02 4.06 -51.93 -0.21 0.81 16 39 H 0.12 1.49 7.92 -51.93 -0.41 1.08 16 40 H 0.11 1.23 8.11 -51.93 -0.42 0.81 16 41 H 0.08 1.77 8.00 -51.93 -0.42 1.35 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.39 9.50 6.32 -40.82 -0.26 9.25 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -30.48 344.38 -5.71 -36.20 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.91 Total: 8.96 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.08 Total: 2.79 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.08 Total: -53.20 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.10 Total: -5.94 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.48 -5.71 -36.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755119814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.717 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds