Wall clock time and date at job start Tue Mar 31 2020 16:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.63879 * 2 1 4 4 C 1.54320 * 110.72353 * 123.13895 * 2 1 3 5 5 N 1.47024 * 107.40267 * 140.48056 * 4 2 1 6 6 C 1.34778 * 125.64392 * 181.10339 * 5 4 2 7 7 O 1.21283 * 119.99244 * 175.03159 * 6 5 4 8 8 C 1.50694 * 120.00609 * 355.02481 * 6 5 4 9 9 C 1.53001 * 109.47117 * 298.53545 * 8 6 5 10 10 C 1.53003 * 109.46828 * 58.53278 * 8 6 5 11 11 C 1.52998 * 109.47264 * 178.53170 * 8 6 5 12 12 C 1.53000 * 109.47104 * 186.70621 * 11 8 6 13 13 F 1.39902 * 109.46624 * 66.28144 * 12 11 8 14 14 F 1.39902 * 109.47202 * 186.27723 * 12 11 8 15 15 F 1.39899 * 109.47508 * 306.28312 * 12 11 8 16 16 C 1.47743 * 108.52907 * 1.18029 * 5 4 2 17 17 C 1.54904 * 104.84151 * 335.75332 * 16 5 4 18 18 H 1.09001 * 111.00377 * 155.16421 * 17 16 5 19 19 N 1.46501 * 111.03963 * 279.00238 * 17 16 5 20 20 C 1.36938 * 120.00241 * 267.22120 * 19 17 16 21 21 H 1.07996 * 119.99670 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00156 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00061 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99984 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46643 * 60.00285 * 24 22 20 26 26 H 1.48496 * 109.47120 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47098 * 300.00631 * 24 22 20 28 28 H 1.09004 * 109.47281 * 298.31040 * 1 2 3 29 29 H 1.08992 * 109.47542 * 58.31563 * 1 2 3 30 30 H 1.09008 * 109.46920 * 178.31481 * 1 2 3 31 31 H 1.09006 * 109.88608 * 259.97688 * 4 2 1 32 32 H 1.09006 * 109.88523 * 20.98349 * 4 2 1 33 33 H 1.09002 * 109.47253 * 51.77883 * 9 8 6 34 34 H 1.09002 * 109.47240 * 171.77449 * 9 8 6 35 35 H 1.08994 * 109.46946 * 291.77602 * 9 8 6 36 36 H 1.09000 * 109.46863 * 62.25920 * 10 8 6 37 37 H 1.08997 * 109.47239 * 182.25261 * 10 8 6 38 38 H 1.08995 * 109.47445 * 302.25786 * 10 8 6 39 39 H 1.08998 * 109.47598 * 306.71242 * 11 8 6 40 40 H 1.09002 * 109.46718 * 66.71324 * 11 8 6 41 41 H 1.08994 * 110.28890 * 216.94485 * 16 5 4 42 42 H 1.09007 * 110.52466 * 94.67904 * 16 5 4 43 43 H 0.97004 * 119.99932 * 87.20836 * 19 17 16 44 44 H 0.96993 * 120.00204 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7890 1.2086 5 7 3.2439 -1.5521 0.7443 6 6 3.9886 -2.3845 1.4985 7 8 4.8775 -3.0331 0.9883 8 6 3.7171 -2.5094 2.9755 9 6 3.9319 -1.1530 3.6500 10 6 2.2721 -2.9634 3.1917 11 6 4.6716 -3.5386 3.5843 12 6 4.2880 -3.7889 5.0441 13 9 3.0343 -4.4074 5.0973 14 9 5.2430 -4.6185 5.6416 15 9 4.2359 -2.5697 5.7283 16 6 3.4633 -1.2509 -0.6854 17 6 2.0790 -0.7975 -1.2124 18 1 2.1850 -0.1554 -2.0868 19 7 1.2266 -1.9509 -1.5117 20 6 1.2018 -2.4740 -2.7769 21 1 1.8103 -2.0361 -3.5543 22 6 0.3946 -3.5671 -3.0603 23 7 -0.3474 -4.1005 -2.1131 24 14 0.3603 -4.2803 -4.7865 25 1 1.7235 -4.7342 -5.1617 26 1 -0.5736 -5.4341 -4.8269 27 1 -0.0957 -3.2399 -5.7429 28 1 -0.3634 0.4874 0.9048 29 1 -0.3634 0.5397 -0.8744 30 1 -0.3633 -1.0273 -0.0302 31 1 2.3741 -0.0989 1.9979 32 1 1.3121 -1.4711 1.5819 33 1 3.3606 -0.3898 3.1214 34 1 3.5969 -1.2052 4.6859 35 1 4.9912 -0.8976 3.6231 36 1 2.1299 -3.9477 2.7458 37 1 2.0636 -3.0151 4.2603 38 1 1.5934 -2.2508 2.7232 39 1 4.6039 -4.4721 3.0256 40 1 5.6926 -3.1599 3.5367 41 1 3.7960 -2.1446 -1.2132 42 1 4.1937 -0.4498 -0.7995 43 1 0.6799 -2.3441 -0.8135 44 1 -0.9111 -4.8646 -2.3110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755119814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:41 Heat of formation + Delta-G solvation = -179.751913 kcal Electronic energy + Delta-G solvation = -29632.643907 eV Core-core repulsion = 25170.190856 eV Total energy + Delta-G solvation = -4462.453051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.24145 -48.68479 -48.66424 -41.63366 -39.25714 -37.00368 -35.70998 -33.77359 -32.23088 -30.86617 -29.16488 -28.44155 -27.41892 -25.91159 -25.20607 -24.05105 -22.18108 -20.74881 -20.29662 -19.62416 -19.53803 -19.24063 -17.96492 -17.46393 -17.33364 -16.57738 -16.30369 -16.04292 -15.81642 -15.57522 -15.48535 -15.29619 -15.09132 -15.08759 -14.77797 -14.65706 -14.55223 -14.41083 -13.80181 -13.71069 -13.56988 -13.23479 -12.96691 -12.90145 -12.86359 -12.80449 -12.55799 -12.48990 -12.27863 -12.13115 -12.09555 -11.98584 -11.84861 -11.34418 -11.22818 -10.98927 -10.68349 -9.61572 -8.94587 -7.94497 -5.20877 1.46055 1.48452 1.53612 1.56297 1.63376 2.07843 2.55583 2.78966 2.92157 3.05098 3.34029 3.42042 3.60542 3.68665 3.73308 3.90376 3.92930 4.07735 4.15025 4.35463 4.37272 4.46219 4.60730 4.67275 4.71565 4.73793 4.78233 4.83456 4.93501 4.95949 4.97735 5.05091 5.22661 5.26830 5.30950 5.35506 5.45733 5.52927 5.67501 6.28003 6.59103 7.10830 7.35649 8.11714 8.33707 9.28395 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.003749 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.015303 B = 7467.537388 C = 8077.524868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.118 0.882 4 C 0.089 3.911 5 N -0.599 5.599 6 C 0.532 3.468 7 O -0.592 6.592 8 C -0.068 4.068 9 C -0.165 4.165 10 C -0.175 4.175 11 C -0.144 4.144 12 C 0.465 3.535 13 F -0.181 7.181 14 F -0.187 7.187 15 F -0.171 7.171 16 C 0.082 3.918 17 C 0.159 3.841 18 H 0.079 0.921 19 N -0.717 5.717 20 C -0.240 4.240 21 H 0.075 0.925 22 C -0.070 4.070 23 N -0.966 5.966 24 Si 0.964 3.036 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.274 1.274 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.034 0.966 42 H 0.082 0.918 43 H 0.376 0.624 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 10.288 16.603 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 H 0.136 0.864 4 C -0.032 4.032 5 N -0.330 5.330 6 C 0.322 3.678 7 O -0.474 6.474 8 C -0.071 4.071 9 C -0.221 4.221 10 C -0.232 4.232 11 C -0.182 4.182 12 C 0.411 3.589 13 F -0.163 7.163 14 F -0.168 7.168 15 F -0.152 7.152 16 C -0.043 4.043 17 C 0.048 3.952 18 H 0.097 0.903 19 N -0.356 5.356 20 C -0.372 4.372 21 H 0.093 0.907 22 C -0.262 4.262 23 N -0.616 5.616 24 Si 0.794 3.206 25 H -0.213 1.213 26 H -0.225 1.225 27 H -0.200 1.200 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.141 0.859 41 H 0.053 0.947 42 H 0.100 0.900 43 H 0.210 0.790 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.280 9.873 16.217 20.334 hybrid contribution -0.229 -1.440 -0.945 1.737 sum 7.051 8.433 15.272 18.817 Atomic orbital electron populations 1.21555 0.93613 1.01329 1.02073 1.22546 0.96837 0.99796 0.92910 0.86368 1.22857 0.87158 0.95074 0.98105 1.48374 1.29872 1.43717 1.11043 1.20449 0.80707 0.77731 0.88938 1.90664 1.35139 1.46313 1.75252 1.20589 0.97329 0.98668 0.90563 1.22539 1.03754 0.92780 1.03028 1.22642 0.93390 1.02190 1.04929 1.22709 1.03156 1.03290 0.89081 1.20338 0.74334 0.73924 0.90332 1.93154 1.42701 1.83398 1.97044 1.93186 1.64508 1.73084 1.86053 1.93091 1.96069 1.43499 1.82553 1.23179 1.00621 0.99526 0.80990 1.21643 0.88150 0.88810 0.96558 0.90295 1.42435 1.50156 1.34069 1.08934 1.19587 1.19511 1.09254 0.88812 0.90676 1.25417 1.00227 0.99763 1.00816 1.69780 1.32134 1.26296 1.33434 0.85346 0.76818 0.77664 0.80743 1.21317 1.22485 1.20000 0.90251 0.92949 0.94652 0.87337 0.90758 0.89798 0.87821 0.91325 0.93693 0.88453 0.89373 0.87926 0.85860 0.94734 0.90037 0.79041 0.94223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.80 71.98 0.63 -2.75 16 2 C -0.10 -2.52 3.42 -9.61 -0.03 -2.55 16 3 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.09 2.12 4.92 86.73 0.43 2.55 16 5 N -0.60 -18.69 3.32 -810.98 -2.69 -21.39 16 6 C 0.53 17.53 6.58 87.65 0.58 18.11 16 7 O -0.59 -24.60 16.15 -3.04 -0.05 -24.65 16 8 C -0.07 -1.61 0.52 -52.93 -0.03 -1.64 16 9 C -0.16 -2.76 7.63 71.98 0.55 -2.21 16 10 C -0.18 -4.12 7.10 71.98 0.51 -3.61 16 11 C -0.14 -3.24 3.91 30.59 0.12 -3.12 16 12 C 0.46 9.38 2.88 71.98 0.21 9.58 16 13 F -0.18 -4.01 14.00 44.97 0.63 -3.38 16 14 F -0.19 -3.99 17.32 44.97 0.78 -3.21 16 15 F -0.17 -3.04 13.70 44.97 0.62 -2.42 16 16 C 0.08 2.88 6.65 86.79 0.58 3.46 16 17 C 0.16 5.56 3.47 46.38 0.16 5.72 16 18 H 0.08 2.68 8.09 -2.39 -0.02 2.66 16 19 N -0.72 -33.56 4.56 -316.38 -1.44 -35.00 16 20 C -0.24 -12.86 9.96 84.03 0.84 -12.02 16 21 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 22 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 23 N -0.97 -58.22 13.06 21.65 0.28 -57.93 16 24 Si 0.96 46.16 29.55 68.60 2.03 48.19 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.03 1.21 6.34 -2.38 -0.02 1.19 16 31 H 0.11 1.76 5.37 -2.38 -0.01 1.75 16 32 H 0.07 1.91 5.06 -2.38 -0.01 1.90 16 33 H 0.08 1.23 4.69 -2.39 -0.01 1.22 16 34 H 0.10 1.48 5.47 -2.39 -0.01 1.46 16 35 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 36 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.92 5.70 -2.39 -0.01 1.90 16 38 H 0.09 1.99 4.06 -2.39 -0.01 1.98 16 39 H 0.10 2.66 7.92 -2.39 -0.02 2.64 16 40 H 0.12 2.53 8.11 -2.39 -0.02 2.51 16 41 H 0.03 1.53 8.00 -2.39 -0.02 1.51 16 42 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 43 H 0.38 19.04 6.32 -92.71 -0.59 18.45 16 44 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -68.99 344.38 5.62 -63.37 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.46 Total: 28.38 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.01 Total: 8.05 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -3.85 Total: -114.32 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 2.02 Total: -9.01 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -68.99 5.62 -63.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755119814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.381 kcal (2) G-P(sol) polarization free energy of solvation -68.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds