Wall clock time and date at job start Tue Mar 31 2020 16:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.91864 * 2 1 4 4 C 1.54914 * 111.00457 * 236.09856 * 2 1 3 5 5 N 1.47425 * 104.83157 * 204.91615 * 4 2 1 6 6 C 1.34780 * 125.64827 * 204.09281 * 5 4 2 7 7 O 1.21280 * 119.99892 * 354.01244 * 6 5 4 8 8 C 1.50698 * 119.99697 * 174.01482 * 6 5 4 9 9 C 1.53002 * 109.46981 * 297.48197 * 8 6 5 10 10 C 1.52998 * 109.47497 * 57.48511 * 8 6 5 11 11 C 1.53001 * 109.46627 * 177.48654 * 8 6 5 12 12 C 1.53008 * 109.46949 * 185.31618 * 11 8 6 13 13 F 1.39901 * 109.46981 * 66.34963 * 12 11 8 14 14 F 1.39896 * 109.47087 * 186.34900 * 12 11 8 15 15 F 1.39901 * 109.46857 * 306.34748 * 12 11 8 16 16 C 1.47025 * 108.70286 * 24.12835 * 5 4 2 17 17 C 1.54323 * 107.27133 * 358.94314 * 16 5 4 18 18 H 1.09005 * 110.71755 * 219.26806 * 17 16 5 19 19 N 1.46495 * 110.72345 * 96.17069 * 17 16 5 20 20 C 1.36938 * 120.00443 * 86.45449 * 19 17 16 21 21 H 1.07999 * 119.99653 * 359.72272 * 20 19 17 22 22 C 1.38806 * 120.00369 * 179.72719 * 20 19 17 23 23 N 1.31622 * 119.99809 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46700 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47015 * 119.99574 * 24 22 20 27 27 H 1.48493 * 109.47214 * 239.99716 * 24 22 20 28 28 H 1.09001 * 109.46949 * 296.09645 * 1 2 3 29 29 H 1.09001 * 109.46874 * 56.09547 * 1 2 3 30 30 H 1.08999 * 109.47145 * 176.09435 * 1 2 3 31 31 H 1.08998 * 110.36174 * 86.07896 * 4 2 1 32 32 H 1.08998 * 110.36160 * 323.75680 * 4 2 1 33 33 H 1.08997 * 109.47215 * 42.89185 * 9 8 6 34 34 H 1.09009 * 109.46919 * 162.89299 * 9 8 6 35 35 H 1.08999 * 109.46942 * 282.89018 * 9 8 6 36 36 H 1.08995 * 109.47009 * 58.63898 * 10 8 6 37 37 H 1.08998 * 109.47144 * 178.63843 * 10 8 6 38 38 H 1.09000 * 109.46767 * 298.64156 * 10 8 6 39 39 H 1.08997 * 109.47140 * 305.31266 * 11 8 6 40 40 H 1.08997 * 109.47361 * 65.31845 * 11 8 6 41 41 H 1.09000 * 109.88602 * 239.52167 * 16 5 4 42 42 H 1.08999 * 110.00870 * 118.42652 * 16 5 4 43 43 H 0.97004 * 119.99938 * 266.17229 * 19 17 16 44 44 H 0.97001 * 119.99795 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4477 -1.5616 -1.5941 7 8 4.2705 -1.6057 -2.7930 8 6 5.8088 -1.8629 -1.0218 9 6 6.3471 -0.6225 -0.3058 10 6 5.6989 -3.0192 -0.0259 11 6 6.7625 -2.2530 -2.1529 12 6 8.1053 -2.6864 -1.5611 13 9 7.9341 -3.8688 -0.8331 14 9 9.0221 -2.9040 -2.5951 15 9 8.5873 -1.6827 -0.7140 16 6 3.4674 -1.2741 0.6960 17 6 2.0861 -0.8080 1.2022 18 1 2.1919 -0.1725 2.0815 19 7 1.2268 -1.9574 1.4962 20 6 1.2814 -2.5564 2.7264 21 1 1.9613 -2.1841 3.4785 22 6 0.4631 -3.6419 3.0069 23 7 -0.3657 -4.0954 2.0904 24 14 0.5382 -4.4594 4.6848 25 1 1.5432 -3.7649 5.5291 26 1 -0.7945 -4.3784 5.3349 27 1 0.9250 -5.8840 4.5245 28 1 -0.3633 0.4521 0.9229 29 1 -0.3633 0.5733 -0.8529 30 1 -0.3633 -1.0253 -0.0700 31 1 2.1560 -0.1719 -2.0836 32 1 1.4518 -1.6703 -1.4024 33 1 5.5494 -0.1669 0.2809 34 1 7.1650 -0.9105 0.3547 35 1 6.7103 0.0935 -1.0430 36 1 5.2927 -3.8958 -0.5304 37 1 6.6872 -3.2531 0.3699 38 1 5.0383 -2.7323 0.7923 39 1 6.3332 -3.0775 -2.7220 40 1 6.9147 -1.3976 -2.8110 41 1 4.2426 -0.5998 1.0600 42 1 3.6661 -2.2884 1.0423 43 1 0.6161 -2.2918 0.8207 44 1 -0.9373 -4.8542 2.2863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755119815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:44 Heat of formation + Delta-G solvation = -164.117120 kcal Electronic energy + Delta-G solvation = -29513.462486 eV Core-core repulsion = 25051.687411 eV Total energy + Delta-G solvation = -4461.775075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.34521 -47.79542 -47.76885 -40.43264 -37.97799 -35.89056 -34.02096 -32.44588 -30.59429 -29.58963 -27.87233 -27.49276 -26.20433 -24.48895 -23.79773 -22.74844 -21.19172 -19.35151 -19.20100 -18.72800 -18.37588 -17.49101 -17.03316 -16.22530 -15.86531 -15.43963 -14.99805 -14.78388 -14.66101 -14.48441 -14.30627 -14.21051 -14.14534 -13.87995 -13.69601 -13.57968 -13.14150 -13.07924 -12.65491 -12.43412 -12.18570 -12.15712 -12.00673 -11.85267 -11.54121 -11.26659 -11.19349 -11.11960 -11.04246 -10.96031 -10.71385 -10.36312 -10.25028 -9.94580 -9.71455 -9.55180 -9.03835 -8.29946 -7.11356 -5.88798 -3.19094 2.57982 2.75755 3.18323 3.36207 3.42223 3.44651 3.71381 3.86799 3.93563 4.42689 4.48431 4.63390 4.67935 4.86949 5.08203 5.11726 5.23875 5.31342 5.36668 5.44094 5.53895 5.62067 5.67930 5.68692 5.77944 5.82299 5.84893 5.90601 6.04436 6.13428 6.19477 6.27224 6.29617 6.38048 6.51779 6.56012 6.72499 6.87338 7.59666 7.79509 8.28395 8.30895 9.41253 9.95594 10.30152 11.33249 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.003965 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.074027 B = 7060.485783 C = 8277.683965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.115 3.885 5 N -0.599 5.599 6 C 0.542 3.458 7 O -0.555 6.555 8 C -0.075 4.075 9 C -0.161 4.161 10 C -0.183 4.183 11 C -0.142 4.142 12 C 0.454 3.546 13 F -0.177 7.177 14 F -0.186 7.186 15 F -0.179 7.179 16 C 0.057 3.943 17 C 0.171 3.829 18 H 0.070 0.930 19 N -0.712 5.712 20 C -0.248 4.248 21 H 0.073 0.927 22 C -0.007 4.007 23 N -0.928 5.928 24 Si 0.906 3.094 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.387 0.613 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.593 7.607 -6.198 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.097 0.903 4 C -0.007 4.007 5 N -0.331 5.331 6 C 0.330 3.670 7 O -0.434 6.434 8 C -0.078 4.078 9 C -0.218 4.218 10 C -0.240 4.240 11 C -0.181 4.181 12 C 0.400 3.600 13 F -0.158 7.158 14 F -0.168 7.168 15 F -0.161 7.161 16 C -0.069 4.069 17 C 0.059 3.941 18 H 0.088 0.912 19 N -0.353 5.353 20 C -0.379 4.379 21 H 0.091 0.909 22 C -0.203 4.203 23 N -0.575 5.575 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.223 0.777 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.587 7.475 -6.669 16.881 hybrid contribution 0.064 -0.830 0.765 1.130 sum 13.651 6.645 -5.905 16.290 Atomic orbital electron populations 1.21545 0.93331 1.02999 1.01008 1.22615 0.97000 0.98433 0.95333 0.90323 1.22280 0.82864 0.98338 0.97202 1.48292 1.11699 1.65264 1.07832 1.19735 0.84831 0.76625 0.85836 1.90672 1.84184 1.53540 1.14968 1.20586 0.92574 0.98968 0.95717 1.22396 1.02594 0.95606 1.01231 1.22730 1.05051 0.96506 0.99680 1.22746 0.89622 1.06513 0.99213 1.20594 0.88073 0.75069 0.76232 1.93134 1.95282 1.49174 1.78215 1.93182 1.69949 1.94852 1.58775 1.93144 1.90004 1.60746 1.72188 1.23770 1.01656 1.02771 0.78659 1.21233 0.88389 0.89870 0.94651 0.91198 1.42466 1.45234 1.32791 1.14826 1.19258 1.18353 1.09652 0.90611 0.90930 1.24740 0.98825 0.98897 0.97884 1.69665 1.26975 1.27685 1.33211 0.86151 0.77279 0.79261 0.83649 1.20465 1.21829 1.21841 0.92063 0.93661 0.91183 0.91355 0.91155 0.90685 0.89878 0.91903 0.91589 0.89982 0.89198 0.86544 0.86780 0.91954 0.89188 0.77718 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.85 37.16 0.33 -1.63 16 2 C -0.11 -1.67 3.51 -88.47 -0.31 -1.98 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.81 6.33 -2.53 -0.02 1.80 16 5 N -0.60 -9.41 3.26 -170.52 -0.56 -9.97 16 6 C 0.54 8.51 6.57 -10.98 -0.07 8.44 16 7 O -0.55 -10.19 16.25 5.56 0.09 -10.10 16 8 C -0.08 -0.94 0.52 -155.66 -0.08 -1.02 16 9 C -0.16 -1.72 7.34 37.16 0.27 -1.44 16 10 C -0.18 -2.35 7.16 37.16 0.27 -2.08 16 11 C -0.14 -1.59 3.84 -26.73 -0.10 -1.69 16 12 C 0.45 4.90 2.92 37.16 0.11 5.01 16 13 F -0.18 -2.06 13.95 2.25 0.03 -2.02 16 14 F -0.19 -2.06 17.32 2.25 0.04 -2.03 16 15 F -0.18 -1.91 13.79 2.25 0.03 -1.88 16 16 C 0.06 0.88 4.89 -3.06 -0.01 0.86 16 17 C 0.17 2.93 3.37 -66.10 -0.22 2.71 16 18 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 19 N -0.71 -15.78 4.62 -51.65 -0.24 -16.02 16 20 C -0.25 -6.23 9.98 -15.06 -0.15 -6.38 16 21 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 23 N -0.93 -26.46 13.06 55.49 0.72 -25.73 16 24 Si 0.91 21.20 29.55 -169.99 -5.02 16.17 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.23 6.37 -51.93 -0.33 0.90 16 31 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 32 H 0.07 1.23 7.98 -51.93 -0.41 0.82 16 33 H 0.07 0.81 4.89 -51.93 -0.25 0.56 16 34 H 0.08 0.82 5.99 -51.92 -0.31 0.51 16 35 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.96 5.39 -51.93 -0.28 0.68 16 38 H 0.09 1.23 4.17 -51.93 -0.22 1.02 16 39 H 0.12 1.34 7.98 -51.93 -0.41 0.92 16 40 H 0.11 1.17 8.04 -51.93 -0.42 0.75 16 41 H 0.06 0.81 5.50 -51.93 -0.29 0.53 16 42 H 0.09 1.57 5.58 -51.93 -0.29 1.29 16 43 H 0.39 9.32 6.08 -40.82 -0.25 9.07 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -28.80 344.75 -5.75 -34.55 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.95 Total: 9.51 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.09 Total: 2.31 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.07 Total: -51.72 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.10 Total: -5.92 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.80 -5.75 -34.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755119815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.564 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds