Wall clock time and date at job start Tue Mar 31 2020 16:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.91864 * 2 1 4 4 C 1.54914 * 111.00457 * 236.09856 * 2 1 3 5 5 N 1.47425 * 104.83157 * 204.91615 * 4 2 1 6 6 C 1.34780 * 125.64827 * 204.09281 * 5 4 2 7 7 O 1.21280 * 119.99892 * 354.01244 * 6 5 4 8 8 C 1.50698 * 119.99697 * 174.01482 * 6 5 4 9 9 C 1.53002 * 109.46981 * 297.48197 * 8 6 5 10 10 C 1.52998 * 109.47497 * 57.48511 * 8 6 5 11 11 C 1.53001 * 109.46627 * 177.48654 * 8 6 5 12 12 C 1.53008 * 109.46949 * 185.31618 * 11 8 6 13 13 F 1.39901 * 109.46981 * 66.34963 * 12 11 8 14 14 F 1.39896 * 109.47087 * 186.34900 * 12 11 8 15 15 F 1.39901 * 109.46857 * 306.34748 * 12 11 8 16 16 C 1.47025 * 108.70286 * 24.12835 * 5 4 2 17 17 C 1.54323 * 107.27133 * 358.94314 * 16 5 4 18 18 H 1.09005 * 110.71755 * 219.26806 * 17 16 5 19 19 N 1.46495 * 110.72345 * 96.17069 * 17 16 5 20 20 C 1.36938 * 120.00443 * 86.45449 * 19 17 16 21 21 H 1.07999 * 119.99653 * 359.72272 * 20 19 17 22 22 C 1.38806 * 120.00369 * 179.72719 * 20 19 17 23 23 N 1.31622 * 119.99809 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46700 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47015 * 119.99574 * 24 22 20 27 27 H 1.48493 * 109.47214 * 239.99716 * 24 22 20 28 28 H 1.09001 * 109.46949 * 296.09645 * 1 2 3 29 29 H 1.09001 * 109.46874 * 56.09547 * 1 2 3 30 30 H 1.08999 * 109.47145 * 176.09435 * 1 2 3 31 31 H 1.08998 * 110.36174 * 86.07896 * 4 2 1 32 32 H 1.08998 * 110.36160 * 323.75680 * 4 2 1 33 33 H 1.08997 * 109.47215 * 42.89185 * 9 8 6 34 34 H 1.09009 * 109.46919 * 162.89299 * 9 8 6 35 35 H 1.08999 * 109.46942 * 282.89018 * 9 8 6 36 36 H 1.08995 * 109.47009 * 58.63898 * 10 8 6 37 37 H 1.08998 * 109.47144 * 178.63843 * 10 8 6 38 38 H 1.09000 * 109.46767 * 298.64156 * 10 8 6 39 39 H 1.08997 * 109.47140 * 305.31266 * 11 8 6 40 40 H 1.08997 * 109.47361 * 65.31845 * 11 8 6 41 41 H 1.09000 * 109.88602 * 239.52167 * 16 5 4 42 42 H 1.08999 * 110.00870 * 118.42652 * 16 5 4 43 43 H 0.97004 * 119.99938 * 266.17229 * 19 17 16 44 44 H 0.97001 * 119.99795 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4477 -1.5616 -1.5941 7 8 4.2705 -1.6057 -2.7930 8 6 5.8088 -1.8629 -1.0218 9 6 6.3471 -0.6225 -0.3058 10 6 5.6989 -3.0192 -0.0259 11 6 6.7625 -2.2530 -2.1529 12 6 8.1053 -2.6864 -1.5611 13 9 7.9341 -3.8688 -0.8331 14 9 9.0221 -2.9040 -2.5951 15 9 8.5873 -1.6827 -0.7140 16 6 3.4674 -1.2741 0.6960 17 6 2.0861 -0.8080 1.2022 18 1 2.1919 -0.1725 2.0815 19 7 1.2268 -1.9574 1.4962 20 6 1.2814 -2.5564 2.7264 21 1 1.9613 -2.1841 3.4785 22 6 0.4631 -3.6419 3.0069 23 7 -0.3657 -4.0954 2.0904 24 14 0.5382 -4.4594 4.6848 25 1 1.5432 -3.7649 5.5291 26 1 -0.7945 -4.3784 5.3349 27 1 0.9250 -5.8840 4.5245 28 1 -0.3633 0.4521 0.9229 29 1 -0.3633 0.5733 -0.8529 30 1 -0.3633 -1.0253 -0.0700 31 1 2.1560 -0.1719 -2.0836 32 1 1.4518 -1.6703 -1.4024 33 1 5.5494 -0.1669 0.2809 34 1 7.1650 -0.9105 0.3547 35 1 6.7103 0.0935 -1.0430 36 1 5.2927 -3.8958 -0.5304 37 1 6.6872 -3.2531 0.3699 38 1 5.0383 -2.7323 0.7923 39 1 6.3332 -3.0775 -2.7220 40 1 6.9147 -1.3976 -2.8110 41 1 4.2426 -0.5998 1.0600 42 1 3.6661 -2.2884 1.0423 43 1 0.6161 -2.2918 0.8207 44 1 -0.9373 -4.8542 2.2863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755119815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:43 Heat of formation + Delta-G solvation = -180.750239 kcal Electronic energy + Delta-G solvation = -29514.183752 eV Core-core repulsion = 25051.687411 eV Total energy + Delta-G solvation = -4462.496341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.22303 -48.68412 -48.63259 -41.66285 -39.29031 -37.01085 -35.70027 -33.88224 -32.24768 -30.55700 -29.37282 -28.44479 -27.44181 -25.92105 -25.18083 -23.95064 -22.37252 -20.69881 -20.27622 -19.60717 -19.49028 -19.19243 -17.96217 -17.46778 -17.26132 -16.57951 -16.37891 -15.92361 -15.84312 -15.59854 -15.53689 -15.28395 -15.11915 -14.90851 -14.76492 -14.72657 -14.63595 -14.40435 -13.94434 -13.58534 -13.43699 -13.29330 -13.11531 -12.92656 -12.85673 -12.83435 -12.57883 -12.34089 -12.26656 -12.15322 -12.06777 -12.03533 -11.69947 -11.40118 -11.31196 -10.98245 -10.70421 -9.61134 -8.97346 -7.90304 -5.17907 1.50348 1.51669 1.52083 1.60383 1.63955 2.05712 2.59359 2.79907 2.93373 3.06266 3.36095 3.42345 3.58324 3.72294 3.78958 3.90745 3.93480 4.01367 4.10053 4.36163 4.40474 4.51747 4.55385 4.62738 4.66735 4.71821 4.79316 4.82878 4.86164 4.92268 4.97655 5.02852 5.18244 5.23735 5.29951 5.34344 5.43007 5.56571 5.62325 6.31444 6.54061 7.04821 7.39360 8.14268 8.36198 9.33249 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.003965 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.074027 B = 7060.485783 C = 8277.683965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.112 0.888 4 C 0.114 3.886 5 N -0.601 5.601 6 C 0.537 3.463 7 O -0.584 6.584 8 C -0.070 4.070 9 C -0.157 4.157 10 C -0.179 4.179 11 C -0.140 4.140 12 C 0.462 3.538 13 F -0.182 7.182 14 F -0.186 7.186 15 F -0.175 7.175 16 C 0.067 3.933 17 C 0.159 3.841 18 H 0.083 0.917 19 N -0.723 5.723 20 C -0.231 4.231 21 H 0.084 0.916 22 C -0.072 4.072 23 N -0.969 5.969 24 Si 0.963 3.037 25 H -0.261 1.261 26 H -0.300 1.300 27 H -0.302 1.302 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.374 0.626 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.599 9.585 -5.607 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.130 0.870 4 C -0.008 4.008 5 N -0.332 5.332 6 C 0.327 3.673 7 O -0.465 6.465 8 C -0.073 4.073 9 C -0.214 4.214 10 C -0.236 4.236 11 C -0.179 4.179 12 C 0.408 3.592 13 F -0.163 7.163 14 F -0.168 7.168 15 F -0.156 7.156 16 C -0.058 4.058 17 C 0.049 3.951 18 H 0.101 0.899 19 N -0.363 5.363 20 C -0.363 4.363 21 H 0.102 0.898 22 C -0.264 4.264 23 N -0.620 5.620 24 Si 0.794 3.206 25 H -0.185 1.185 26 H -0.227 1.227 27 H -0.230 1.230 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.144 0.856 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.208 0.792 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.644 9.503 -6.058 19.281 hybrid contribution -0.519 -1.375 0.515 1.557 sum 15.125 8.128 -5.543 18.044 Atomic orbital electron populations 1.21473 0.93694 1.01233 1.01960 1.22581 0.96589 0.99412 0.93215 0.86958 1.22248 0.82721 0.97625 0.98220 1.48377 1.11704 1.65155 1.07979 1.20323 0.85823 0.75723 0.85475 1.90656 1.84838 1.54747 1.16305 1.20579 0.90973 0.99757 0.95991 1.22403 1.02827 0.94692 1.01498 1.22697 1.05501 0.96059 0.99339 1.22716 0.89484 1.06795 0.98885 1.20421 0.87788 0.74879 0.76108 1.93124 1.95300 1.49583 1.78340 1.93184 1.69900 1.94854 1.58840 1.93151 1.89935 1.60498 1.72038 1.23579 1.01299 1.02417 0.78455 1.21533 0.88529 0.88720 0.96291 0.89950 1.42635 1.45950 1.34074 1.13677 1.19678 1.16556 1.08464 0.91560 0.89770 1.25430 0.99716 1.00471 1.00800 1.69819 1.28691 1.28484 1.35050 0.85217 0.77026 0.77817 0.80578 1.18521 1.22731 1.22979 0.92376 0.91124 0.94530 0.90323 0.93948 0.90618 0.88759 0.90733 0.93241 0.88581 0.89970 0.87250 0.85618 0.88513 0.91201 0.79190 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 8.85 71.98 0.64 -3.01 16 2 C -0.10 -2.68 3.51 -9.40 -0.03 -2.71 16 3 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.11 3.49 6.33 86.86 0.55 4.04 16 5 N -0.60 -18.08 3.26 -811.78 -2.65 -20.73 16 6 C 0.54 16.22 6.57 87.66 0.58 16.80 16 7 O -0.58 -21.09 16.25 -3.03 -0.05 -21.14 16 8 C -0.07 -1.61 0.52 -52.93 -0.03 -1.63 16 9 C -0.16 -2.84 7.34 71.98 0.53 -2.31 16 10 C -0.18 -4.38 7.16 71.98 0.52 -3.86 16 11 C -0.14 -2.89 3.84 30.60 0.12 -2.77 16 12 C 0.46 9.01 2.92 71.98 0.21 9.22 16 13 F -0.18 -3.93 13.95 44.97 0.63 -3.31 16 14 F -0.19 -3.78 17.32 44.97 0.78 -3.00 16 15 F -0.17 -3.21 13.79 44.97 0.62 -2.59 16 16 C 0.07 1.94 4.89 86.73 0.42 2.36 16 17 C 0.16 5.19 3.37 46.18 0.16 5.34 16 18 H 0.08 2.52 8.12 -2.38 -0.02 2.50 16 19 N -0.72 -32.04 4.62 -317.34 -1.47 -33.50 16 20 C -0.23 -11.49 9.98 84.03 0.84 -10.66 16 21 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 22 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 23 N -0.97 -57.01 13.06 21.65 0.28 -56.73 16 24 Si 0.96 43.96 29.55 68.60 2.03 45.99 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 27 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.31 6.37 -2.39 -0.02 1.29 16 31 H 0.08 2.24 8.10 -2.39 -0.02 2.22 16 32 H 0.04 1.53 7.98 -2.39 -0.02 1.51 16 33 H 0.08 1.35 4.89 -2.39 -0.01 1.34 16 34 H 0.09 1.52 5.99 -2.38 -0.01 1.51 16 35 H 0.07 1.20 7.95 -2.39 -0.02 1.18 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 2.07 5.39 -2.39 -0.01 2.05 16 38 H 0.08 2.15 4.17 -2.39 -0.01 2.14 16 39 H 0.11 2.43 7.98 -2.39 -0.02 2.41 16 40 H 0.13 2.31 8.04 -2.39 -0.02 2.29 16 41 H 0.10 2.18 5.50 -2.39 -0.01 2.16 16 42 H 0.07 2.37 5.58 -2.39 -0.01 2.36 16 43 H 0.37 18.54 6.08 -92.70 -0.56 17.97 16 44 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -62.68 344.75 5.61 -57.07 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.48 Total: 30.53 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 4.96 Total: 7.40 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -3.83 Total: -110.95 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.05 Total: -21.14 kcal Atomic # 9 Polarization: -10.93 SS G_CDS: 2.03 Total: -8.90 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -62.68 5.61 -57.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755119815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.678 kcal (2) G-P(sol) polarization free energy of solvation -62.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds