Wall clock time and date at job start Tue Mar 31 2020 14:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47103 * 2 1 4 4 C 1.37101 * 120.00148 * 264.91209 * 3 2 1 5 5 H 1.07999 * 119.99980 * 142.30741 * 4 3 2 6 6 C 1.38951 * 119.99911 * 322.31508 * 4 3 2 7 7 N 1.31420 * 119.99821 * 339.71959 * 6 4 3 8 8 Si 1.86798 * 119.99899 * 159.72042 * 6 4 3 9 9 H 1.48499 * 109.47167 * 60.00111 * 8 6 4 10 10 H 1.48506 * 109.46720 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47443 * 299.99630 * 8 6 4 12 12 C 1.34776 * 119.99824 * 84.91287 * 3 2 1 13 13 O 1.21297 * 119.99984 * 180.02562 * 12 3 2 14 14 C 1.50693 * 120.00406 * 359.97438 * 12 3 2 15 15 C 1.52992 * 109.47510 * 180.02562 * 14 12 3 16 16 C 1.53120 * 109.52749 * 175.00264 * 15 14 12 17 17 C 1.53034 * 109.27953 * 177.62115 * 16 15 14 18 18 N 1.46844 * 109.52459 * 300.81589 * 17 16 15 19 19 C 1.46900 * 111.00074 * 185.84116 * 18 17 16 20 20 C 1.52997 * 109.47176 * 76.48590 * 19 18 17 21 21 F 1.39904 * 109.47104 * 54.04523 * 20 19 18 22 22 F 1.39900 * 109.46983 * 174.04434 * 20 19 18 23 23 F 1.39899 * 109.47149 * 294.04810 * 20 19 18 24 24 C 1.46849 * 111.19478 * 61.74561 * 18 17 16 25 25 C 1.53038 * 109.52303 * 298.25532 * 24 18 17 26 26 H 1.09003 * 109.47433 * 60.00309 * 1 2 3 27 27 H 1.09003 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47238 * 299.99811 * 1 2 3 29 29 H 1.09003 * 109.47238 * 240.00189 * 2 1 3 30 30 H 1.09003 * 109.47317 * 120.00234 * 2 1 3 31 31 H 0.97000 * 119.99862 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46992 * 59.99941 * 14 12 3 33 33 H 1.08998 * 109.47043 * 300.00447 * 14 12 3 34 34 H 1.08998 * 109.52439 * 54.87084 * 15 14 12 35 35 H 1.08995 * 109.50345 * 57.67615 * 16 15 14 36 36 H 1.09005 * 109.53278 * 297.58221 * 16 15 14 37 37 H 1.09000 * 109.46128 * 180.80150 * 17 16 15 38 38 H 1.09000 * 109.45295 * 60.83252 * 17 16 15 39 39 H 1.09002 * 109.47336 * 196.48794 * 19 18 17 40 40 H 1.08999 * 109.47004 * 316.48912 * 19 18 17 41 41 H 1.09000 * 109.46544 * 58.27184 * 24 18 17 42 42 H 1.09001 * 109.46147 * 178.24055 * 24 18 17 43 43 H 1.09002 * 109.50340 * 299.23903 * 25 24 18 44 44 H 1.09004 * 109.50190 * 179.12082 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3461 1.9924 -1.1826 5 1 2.1208 3.0383 -1.3305 6 6 2.9679 1.2663 -2.1910 7 7 3.5958 0.1480 -1.9039 8 14 2.9114 1.8796 -3.9545 9 1 3.5468 3.2195 -4.0332 10 1 3.6450 0.9321 -4.8318 11 1 1.4982 1.9749 -4.4005 12 6 2.1453 2.0510 1.1626 13 8 2.5492 3.1948 1.1626 14 6 1.7845 1.3794 2.4625 15 6 2.0182 2.3513 3.6208 16 6 1.5356 1.7156 4.9275 17 6 1.8260 2.6676 6.0899 18 7 3.2686 2.9336 6.1578 19 6 3.6014 3.7326 7.3447 20 6 3.5736 2.8383 8.5857 21 9 4.4087 1.7341 8.3836 22 9 4.0214 3.5649 9.6942 23 9 2.2655 2.3980 8.8141 24 6 3.7462 3.5872 4.9325 25 6 3.5131 2.6626 3.7355 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.0302 -0.3587 -2.6078 32 1 2.4062 0.4946 2.5991 33 1 0.7350 1.0862 2.4409 34 1 1.4669 3.2738 3.4391 35 1 2.0594 0.7735 5.0891 36 1 0.4631 1.5302 4.8682 37 1 1.4965 2.2119 7.0236 38 1 1.2909 3.6044 5.9344 39 1 4.5971 4.1604 7.2273 40 1 2.8724 4.5349 7.4587 41 1 3.2020 4.5197 4.7826 42 1 4.8113 3.7994 5.0256 43 1 4.0680 1.7354 3.8783 44 1 3.8533 3.1544 2.8242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602079606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:49 Heat of formation + Delta-G solvation = -193.032389 kcal Electronic energy + Delta-G solvation = -28497.065366 eV Core-core repulsion = 24034.036430 eV Total energy + Delta-G solvation = -4463.028935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.21558 -47.80395 -47.61209 -39.47118 -38.23438 -35.24996 -34.25749 -32.04607 -30.75338 -30.11123 -29.40288 -27.29851 -24.84195 -23.41626 -22.98159 -22.32184 -21.76767 -19.64338 -18.67873 -18.64918 -18.50460 -17.51262 -16.74042 -16.02143 -15.63680 -15.17007 -15.03709 -14.69309 -14.55570 -14.41335 -14.30122 -14.18634 -14.04284 -13.84893 -13.76838 -13.58166 -13.11873 -12.92065 -12.86183 -12.46280 -12.20275 -12.07682 -11.97067 -11.72258 -11.48957 -11.17011 -11.06223 -10.97155 -10.92133 -10.37801 -10.34750 -10.34202 -10.14132 -10.04403 -9.92841 -8.89737 -8.65506 -8.25101 -7.41755 -6.30169 -3.94805 2.56163 3.19982 3.25765 3.29200 3.37260 3.69000 3.86852 3.97120 4.17731 4.30062 4.71476 4.83533 4.84466 4.96798 5.02322 5.13260 5.18073 5.36646 5.47259 5.51582 5.63713 5.80565 5.84715 5.91497 5.93129 6.00322 6.16284 6.19212 6.23814 6.25343 6.38195 6.46734 6.56338 6.64935 6.72737 6.84866 6.90613 6.99897 7.26610 7.60748 8.30690 8.55353 9.23440 9.45917 10.07521 10.74248 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.028729 B = 0.002648 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.392618 B =10572.536631 C =10948.076632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 N -0.443 5.443 4 C -0.308 4.308 5 H 0.088 0.912 6 C 0.037 3.963 7 N -0.871 5.871 8 Si 0.916 3.084 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.461 3.539 13 O -0.582 6.582 14 C -0.130 4.130 15 C -0.068 4.068 16 C -0.111 4.111 17 C 0.039 3.961 18 N -0.533 5.533 19 C 0.008 3.992 20 C 0.457 3.543 21 F -0.172 7.172 22 F -0.188 7.188 23 F -0.184 7.184 24 C 0.063 3.937 25 C -0.114 4.114 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.267 0.733 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 2.004 17.316 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.162 5.162 4 C -0.436 4.436 5 H 0.106 0.894 6 C -0.167 4.167 7 N -0.509 5.509 8 Si 0.743 3.257 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.250 3.750 13 O -0.466 6.466 14 C -0.170 4.170 15 C -0.087 4.087 16 C -0.149 4.149 17 C -0.088 4.088 18 N -0.258 5.258 19 C -0.122 4.122 20 C 0.402 3.598 21 F -0.153 7.153 22 F -0.170 7.170 23 F -0.166 7.166 24 C -0.064 4.064 25 C -0.151 4.151 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.124 0.876 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.206 1.938 17.234 17.482 hybrid contribution -0.441 0.625 -0.713 1.046 sum -2.646 2.563 16.521 16.927 Atomic orbital electron populations 1.22216 0.98360 1.00273 1.01431 1.21491 0.91546 0.85714 1.03683 1.43501 1.55976 1.11748 1.04981 1.19350 1.37380 0.96811 0.90095 0.89436 1.25358 0.94332 0.96588 1.00443 1.69925 1.30997 1.16563 1.33439 0.86170 0.78425 0.78776 0.82350 1.19798 1.21021 1.19985 1.20348 0.81921 0.87866 0.84892 1.90458 1.50466 1.18856 1.86835 1.21677 1.02010 0.99284 0.94049 1.20882 0.96796 0.98460 0.92545 1.21667 1.00767 0.98920 0.93544 1.22506 0.86259 0.99282 1.00727 1.61827 1.16641 1.45719 1.01577 1.23189 1.06028 0.93922 0.89095 1.20593 0.73463 0.80458 0.85257 1.93209 1.71656 1.55521 1.94937 1.93174 1.89387 1.77628 1.56781 1.93100 1.37663 1.90619 1.95179 1.22189 0.99848 0.96051 0.88293 1.21771 0.96150 0.99780 0.97437 0.92540 0.93175 0.93897 0.87576 0.93368 0.92273 0.90252 0.90646 0.91058 0.91003 0.91432 0.89533 0.94353 0.86500 0.90142 0.94236 0.90602 0.91792 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.15 37.16 0.38 -2.54 16 2 C 0.10 2.14 5.42 -4.04 -0.02 2.11 16 3 N -0.44 -10.99 2.53 -114.81 -0.29 -11.29 16 4 C -0.31 -8.46 8.90 -14.93 -0.13 -8.59 16 5 H 0.09 2.51 7.77 -52.49 -0.41 2.11 16 6 C 0.04 0.97 4.93 -17.46 -0.09 0.88 16 7 N -0.87 -23.38 11.48 55.50 0.64 -22.74 16 8 Si 0.92 20.52 29.60 -169.99 -5.03 15.49 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 C 0.46 10.80 7.33 -10.99 -0.08 10.72 16 13 O -0.58 -15.30 13.86 5.54 0.08 -15.22 16 14 C -0.13 -2.29 3.79 -27.89 -0.11 -2.40 16 15 C -0.07 -1.06 1.89 -90.50 -0.17 -1.23 16 16 C -0.11 -1.39 5.38 -26.65 -0.14 -1.53 16 17 C 0.04 0.45 5.23 -3.84 -0.02 0.43 16 18 N -0.53 -6.16 4.40 -234.67 -1.03 -7.19 16 19 C 0.01 0.07 5.12 -3.83 -0.02 0.05 16 20 C 0.46 4.63 3.27 37.16 0.12 4.75 16 21 F -0.17 -2.06 17.13 2.25 0.04 -2.02 16 22 F -0.19 -1.87 17.32 2.25 0.04 -1.83 16 23 F -0.18 -1.98 14.65 2.25 0.03 -1.95 16 24 C 0.06 0.79 5.42 -3.83 -0.02 0.77 16 25 C -0.11 -1.81 5.09 -26.65 -0.14 -1.94 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.70 6.61 -51.93 -0.34 0.36 16 29 H 0.11 2.53 5.56 -51.93 -0.29 2.24 16 30 H 0.05 0.94 6.65 -51.93 -0.35 0.60 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.08 1.36 7.41 -51.93 -0.38 0.98 16 33 H 0.08 1.21 6.55 -51.93 -0.34 0.87 16 34 H 0.07 1.21 7.95 -51.93 -0.41 0.80 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.93 5.45 -51.93 -0.28 0.65 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.12 0.87 7.78 -51.93 -0.40 0.47 16 40 H 0.08 0.61 7.99 -51.93 -0.41 0.20 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.10 1.92 6.04 -51.93 -0.31 1.60 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -29.86 353.22 -7.09 -36.95 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.44 Total: 2.99 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.44 Total: 1.49 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: -0.69 Total: -41.22 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.08 Total: -15.22 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.80 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.86 -7.09 -36.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602079606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.085 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds