Wall clock time and date at job start Tue Mar 31 2020 14:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47103 * 2 1 4 4 C 1.37101 * 120.00148 * 264.91209 * 3 2 1 5 5 H 1.07999 * 119.99980 * 142.30741 * 4 3 2 6 6 C 1.38951 * 119.99911 * 322.31508 * 4 3 2 7 7 N 1.31420 * 119.99821 * 339.71959 * 6 4 3 8 8 Si 1.86798 * 119.99899 * 159.72042 * 6 4 3 9 9 H 1.48499 * 109.47167 * 60.00111 * 8 6 4 10 10 H 1.48506 * 109.46720 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47443 * 299.99630 * 8 6 4 12 12 C 1.34776 * 119.99824 * 84.91287 * 3 2 1 13 13 O 1.21297 * 119.99984 * 180.02562 * 12 3 2 14 14 C 1.50693 * 120.00406 * 359.97438 * 12 3 2 15 15 C 1.52992 * 109.47510 * 180.02562 * 14 12 3 16 16 C 1.53120 * 109.52749 * 175.00264 * 15 14 12 17 17 C 1.53034 * 109.27953 * 177.62115 * 16 15 14 18 18 N 1.46844 * 109.52459 * 300.81589 * 17 16 15 19 19 C 1.46900 * 111.00074 * 185.84116 * 18 17 16 20 20 C 1.52997 * 109.47176 * 76.48590 * 19 18 17 21 21 F 1.39904 * 109.47104 * 54.04523 * 20 19 18 22 22 F 1.39900 * 109.46983 * 174.04434 * 20 19 18 23 23 F 1.39899 * 109.47149 * 294.04810 * 20 19 18 24 24 C 1.46849 * 111.19478 * 61.74561 * 18 17 16 25 25 C 1.53038 * 109.52303 * 298.25532 * 24 18 17 26 26 H 1.09003 * 109.47433 * 60.00309 * 1 2 3 27 27 H 1.09003 * 109.47492 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47238 * 299.99811 * 1 2 3 29 29 H 1.09003 * 109.47238 * 240.00189 * 2 1 3 30 30 H 1.09003 * 109.47317 * 120.00234 * 2 1 3 31 31 H 0.97000 * 119.99862 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46992 * 59.99941 * 14 12 3 33 33 H 1.08998 * 109.47043 * 300.00447 * 14 12 3 34 34 H 1.08998 * 109.52439 * 54.87084 * 15 14 12 35 35 H 1.08995 * 109.50345 * 57.67615 * 16 15 14 36 36 H 1.09005 * 109.53278 * 297.58221 * 16 15 14 37 37 H 1.09000 * 109.46128 * 180.80150 * 17 16 15 38 38 H 1.09000 * 109.45295 * 60.83252 * 17 16 15 39 39 H 1.09002 * 109.47336 * 196.48794 * 19 18 17 40 40 H 1.08999 * 109.47004 * 316.48912 * 19 18 17 41 41 H 1.09000 * 109.46544 * 58.27184 * 24 18 17 42 42 H 1.09001 * 109.46147 * 178.24055 * 24 18 17 43 43 H 1.09002 * 109.50340 * 299.23903 * 25 24 18 44 44 H 1.09004 * 109.50190 * 179.12082 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3461 1.9924 -1.1826 5 1 2.1208 3.0383 -1.3305 6 6 2.9679 1.2663 -2.1910 7 7 3.5958 0.1480 -1.9039 8 14 2.9114 1.8796 -3.9545 9 1 3.5468 3.2195 -4.0332 10 1 3.6450 0.9321 -4.8318 11 1 1.4982 1.9749 -4.4005 12 6 2.1453 2.0510 1.1626 13 8 2.5492 3.1948 1.1626 14 6 1.7845 1.3794 2.4625 15 6 2.0182 2.3513 3.6208 16 6 1.5356 1.7156 4.9275 17 6 1.8260 2.6676 6.0899 18 7 3.2686 2.9336 6.1578 19 6 3.6014 3.7326 7.3447 20 6 3.5736 2.8383 8.5857 21 9 4.4087 1.7341 8.3836 22 9 4.0214 3.5649 9.6942 23 9 2.2655 2.3980 8.8141 24 6 3.7462 3.5872 4.9325 25 6 3.5131 2.6626 3.7355 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.0302 -0.3587 -2.6078 32 1 2.4062 0.4946 2.5991 33 1 0.7350 1.0862 2.4409 34 1 1.4669 3.2738 3.4391 35 1 2.0594 0.7735 5.0891 36 1 0.4631 1.5302 4.8682 37 1 1.4965 2.2119 7.0236 38 1 1.2909 3.6044 5.9344 39 1 4.5971 4.1604 7.2273 40 1 2.8724 4.5349 7.4587 41 1 3.2020 4.5197 4.7826 42 1 4.8113 3.7994 5.0256 43 1 4.0680 1.7354 3.8783 44 1 3.8533 3.1544 2.8242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602079606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:48 Heat of formation + Delta-G solvation = -210.532517 kcal Electronic energy + Delta-G solvation = -28497.824228 eV Core-core repulsion = 24034.036430 eV Total energy + Delta-G solvation = -4463.787798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -51.01768 -48.59127 -48.45054 -40.85717 -39.66091 -36.96072 -35.57172 -33.97658 -31.79200 -31.27662 -31.03481 -28.56551 -26.59789 -24.47513 -24.08904 -23.74486 -22.94844 -20.83685 -20.27887 -19.46420 -19.40194 -18.65855 -18.32689 -17.64719 -16.95253 -16.66015 -16.09435 -16.01485 -15.89292 -15.52857 -15.38127 -15.19933 -15.01511 -14.88562 -14.67091 -14.60434 -14.54595 -14.40856 -14.02326 -13.88136 -13.53005 -13.52359 -13.19673 -12.92883 -12.81062 -12.66247 -12.60484 -12.54904 -12.20610 -12.10935 -12.06593 -11.79358 -11.53160 -11.32449 -11.15043 -10.83424 -10.10970 -9.52947 -9.36752 -8.30596 -6.03083 1.39443 1.41192 1.51071 1.78158 2.14557 2.32030 2.53227 2.93596 3.05180 3.12487 3.15396 3.50235 3.80700 3.89292 3.91486 4.11521 4.22379 4.29087 4.33731 4.34479 4.46095 4.50771 4.62746 4.64166 4.70159 4.75965 4.87965 4.92268 4.93527 5.04907 5.08846 5.12803 5.22933 5.33756 5.45155 5.50157 5.55208 5.59975 5.84180 5.94583 6.26368 6.60868 7.24887 7.56384 8.17182 8.71946 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.028729 B = 0.002648 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.392618 B =10572.536631 C =10948.076632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.099 3.901 3 N -0.460 5.460 4 C -0.340 4.340 5 H 0.061 0.939 6 C 0.003 3.997 7 N -0.891 5.891 8 Si 0.977 3.023 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.265 1.265 12 C 0.448 3.552 13 O -0.621 6.621 14 C -0.117 4.117 15 C -0.063 4.063 16 C -0.103 4.103 17 C 0.040 3.960 18 N -0.543 5.543 19 C 0.010 3.990 20 C 0.459 3.541 21 F -0.185 7.185 22 F -0.186 7.186 23 F -0.188 7.188 24 C 0.073 3.927 25 C -0.112 4.112 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.272 0.728 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.040 0.960 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 1.466 18.638 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 N -0.179 5.179 4 C -0.469 4.469 5 H 0.078 0.922 6 C -0.200 4.200 7 N -0.529 5.529 8 Si 0.801 3.199 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.190 1.190 12 C 0.239 3.761 13 O -0.507 6.507 14 C -0.157 4.157 15 C -0.082 4.082 16 C -0.141 4.141 17 C -0.087 4.087 18 N -0.268 5.268 19 C -0.120 4.120 20 C 0.404 3.596 21 F -0.166 7.166 22 F -0.168 7.168 23 F -0.169 7.169 24 C -0.054 4.054 25 C -0.150 4.150 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.062 0.938 39 H 0.152 0.848 40 H 0.119 0.881 41 H 0.058 0.942 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.168 1.373 18.572 18.890 hybrid contribution -0.102 0.795 -1.089 1.352 sum -3.270 2.168 17.483 17.918 Atomic orbital electron populations 1.22102 0.95378 1.02393 1.01261 1.21574 0.93966 0.83751 1.03173 1.43805 1.56368 1.12975 1.04757 1.19304 1.39061 0.96278 0.92219 0.92163 1.26065 0.93477 0.96690 1.03728 1.69997 1.31039 1.17240 1.34615 0.85248 0.78837 0.78007 0.77780 1.20363 1.19771 1.18980 1.21337 0.80846 0.87555 0.86407 1.90429 1.51880 1.20742 1.87681 1.21643 1.03347 0.99344 0.91384 1.20841 0.96370 0.97500 0.93487 1.21603 1.01796 0.98793 0.91881 1.22521 0.86280 0.99357 1.00533 1.61714 1.16840 1.46470 1.01782 1.23281 1.07727 0.93688 0.87281 1.20719 0.73054 0.80155 0.85668 1.93187 1.72075 1.56329 1.95026 1.93179 1.89355 1.77483 1.56781 1.93090 1.37888 1.90702 1.95233 1.21998 1.00743 0.95044 0.87636 1.21625 0.96376 0.99751 0.97224 0.94291 0.89830 0.92455 0.90156 0.91683 0.91868 0.89505 0.88300 0.92674 0.91019 0.89562 0.88464 0.93750 0.84776 0.88100 0.94183 0.89411 0.92372 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 10.15 71.98 0.73 -4.45 16 2 C 0.10 4.19 5.42 86.38 0.47 4.66 16 3 N -0.46 -23.35 2.53 -635.54 -1.61 -24.96 16 4 C -0.34 -19.34 8.90 84.04 0.75 -18.60 16 5 H 0.06 3.66 7.77 -2.91 -0.02 3.64 16 6 C 0.00 0.14 4.93 84.93 0.42 0.56 16 7 N -0.89 -48.40 11.48 21.66 0.25 -48.15 16 8 Si 0.98 42.60 29.60 68.60 2.03 44.63 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 12 C 0.45 21.52 7.33 87.66 0.64 22.16 16 13 O -0.62 -34.18 13.86 -3.08 -0.04 -34.22 16 14 C -0.12 -4.06 3.79 29.84 0.11 -3.94 16 15 C -0.06 -1.91 1.89 -10.71 -0.02 -1.94 16 16 C -0.10 -2.33 5.38 30.65 0.16 -2.16 16 17 C 0.04 0.81 5.23 86.33 0.45 1.26 16 18 N -0.54 -11.38 4.40 -896.37 -3.95 -15.33 16 19 C 0.01 0.15 5.12 86.30 0.44 0.59 16 20 C 0.46 8.25 3.27 71.98 0.24 8.48 16 21 F -0.18 -4.11 17.13 44.97 0.77 -3.34 16 22 F -0.19 -3.30 17.32 44.97 0.78 -2.52 16 23 F -0.19 -3.59 14.65 44.97 0.66 -2.93 16 24 C 0.07 1.76 5.42 86.33 0.47 2.22 16 25 C -0.11 -3.59 5.09 30.65 0.16 -3.43 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.06 1.75 6.61 -2.39 -0.02 1.74 16 29 H 0.08 3.85 5.56 -2.39 -0.01 3.84 16 30 H 0.06 2.48 6.65 -2.39 -0.02 2.46 16 31 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.09 2.89 7.41 -2.39 -0.02 2.87 16 33 H 0.10 2.94 6.55 -2.39 -0.02 2.93 16 34 H 0.05 1.86 7.95 -2.39 -0.02 1.84 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 1.64 8.14 -2.38 -0.02 1.63 16 37 H 0.10 1.80 5.45 -2.39 -0.01 1.79 16 38 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.13 1.61 7.78 -2.39 -0.02 1.59 16 40 H 0.10 1.19 7.99 -2.39 -0.02 1.18 16 41 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 1.89 7.93 -2.39 -0.02 1.87 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 2.29 6.04 -2.38 -0.01 2.28 16 Total: -1.00 -67.20 353.22 4.92 -62.29 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 1.01 Total: 19.10 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.02 Total: 5.42 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -5.31 Total: -88.44 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.04 Total: -34.22 kcal Atomic # 9 Polarization: -10.99 SS G_CDS: 2.21 Total: -8.79 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -67.20 4.92 -62.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602079606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.247 kcal (2) G-P(sol) polarization free energy of solvation -67.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds