Wall clock time and date at job start Tue Mar 31 2020 13:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47307 * 2 1 4 4 C 1.53004 * 109.47265 * 239.99868 * 2 1 3 5 5 C 1.50704 * 109.46997 * 175.54867 * 4 2 1 6 6 H 1.08002 * 120.00051 * 4.87461 * 5 4 2 7 7 C 1.37878 * 119.99987 * 184.86840 * 5 4 2 8 8 N 1.31509 * 119.99523 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99987 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47112 * 60.00371 * 9 7 5 11 11 H 1.48500 * 109.47384 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47598 * 300.00634 * 9 7 5 13 13 N 1.46903 * 109.46939 * 119.99940 * 2 1 3 14 14 C 1.46852 * 111.00146 * 58.42758 * 13 2 1 15 15 C 1.53030 * 109.52480 * 174.15754 * 14 13 2 16 16 C 1.53123 * 109.27765 * 59.17880 * 15 14 13 17 17 C 1.53117 * 109.16219 * 302.34498 * 16 15 14 18 18 H 1.08993 * 109.50703 * 297.71176 * 17 16 15 19 19 C 1.53002 * 109.50385 * 177.62896 * 17 16 15 20 20 N 1.46502 * 109.46898 * 65.00264 * 19 17 16 21 21 C 1.34770 * 120.00436 * 179.97438 * 20 19 17 22 22 O 1.21286 * 119.99440 * 359.97438 * 21 20 19 23 23 C 1.50697 * 120.00291 * 180.02562 * 21 20 19 24 24 F 1.39907 * 109.47146 * 180.02562 * 23 21 20 25 25 F 1.39897 * 109.47015 * 299.99574 * 23 21 20 26 26 F 1.39899 * 109.47568 * 60.00064 * 23 21 20 27 27 C 1.46840 * 111.00258 * 294.21682 * 13 2 1 28 28 H 1.08995 * 109.47642 * 300.00049 * 1 2 3 29 29 H 1.09002 * 109.47282 * 59.99952 * 1 2 3 30 30 H 1.09009 * 109.47217 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46856 * 295.54861 * 4 2 1 32 32 H 1.08996 * 109.46784 * 55.55383 * 4 2 1 33 33 H 0.97005 * 119.99613 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.46114 * 294.17892 * 14 13 2 35 35 H 1.09005 * 109.45934 * 54.14654 * 14 13 2 36 36 H 1.08997 * 109.50364 * 179.11965 * 15 14 13 37 37 H 1.09005 * 109.50874 * 299.20197 * 15 14 13 38 38 H 1.08999 * 109.51980 * 62.24787 * 16 15 14 39 39 H 1.09000 * 109.52342 * 182.37681 * 16 15 14 40 40 H 1.08998 * 109.47152 * 184.99991 * 19 17 16 41 41 H 1.08999 * 109.47074 * 305.00478 * 19 17 16 42 42 H 0.97003 * 119.99792 * 359.97438 * 20 19 17 43 43 H 1.09007 * 109.46179 * 305.85650 * 27 13 2 44 44 H 1.09005 * 109.46145 * 65.81952 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5430 -0.6265 -1.3056 6 1 4.0864 -0.1734 -0.4896 7 6 4.2243 -1.1183 -2.3987 8 7 3.5624 -1.6696 -3.3924 9 14 6.0872 -1.0001 -2.4688 10 1 6.6734 -1.7360 -1.3199 11 1 6.5735 -1.5960 -3.7391 12 1 6.4956 0.4261 -2.4034 13 7 2.0195 -0.6925 1.1995 14 6 1.5182 -2.0718 1.2524 15 6 2.1618 -2.8050 2.4313 16 6 1.8229 -2.0688 3.7305 17 6 2.3128 -0.6215 3.6304 18 1 3.3967 -0.6112 3.5162 19 6 1.9258 0.1378 4.9011 20 7 2.6374 -0.4335 6.0472 21 6 2.4517 0.0792 7.2796 22 8 1.6956 1.0139 7.4398 23 6 3.1842 -0.5081 8.4584 24 9 2.8302 0.1861 9.6204 25 9 2.8382 -1.8564 8.5977 26 9 4.5635 -0.3995 8.2517 27 6 1.6648 0.0484 2.4166 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7432 -1.7693 -1.2102 32 1 1.6130 -0.2555 -2.1374 33 1 4.0418 -2.0160 -4.1613 34 1 0.4357 -2.0601 1.3792 35 1 1.7696 -2.5854 0.3244 36 1 1.7777 -3.8239 2.4797 37 1 3.2434 -2.8298 2.2980 38 1 0.7438 -2.0783 3.8836 39 1 2.3142 -2.5635 4.5683 40 1 2.1954 1.1883 4.7930 41 1 0.8510 0.0531 5.0618 42 1 3.2424 -1.1809 5.9189 43 1 2.0225 1.0748 2.3342 44 1 0.5815 0.0502 2.5379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839607907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:04 Heat of formation + Delta-G solvation = -195.679105 kcal Electronic energy + Delta-G solvation = -28116.462544 eV Core-core repulsion = 23653.318838 eV Total energy + Delta-G solvation = -4463.143706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.72144 -48.25059 -48.20539 -40.39678 -39.16582 -36.32873 -34.33996 -32.48995 -31.50336 -29.86679 -28.44909 -27.35246 -25.67028 -24.17118 -22.75186 -22.24989 -21.75612 -20.19250 -19.32671 -19.17320 -19.00252 -18.62231 -16.63900 -16.18409 -15.95165 -15.89265 -15.38053 -15.00843 -14.94432 -14.62088 -14.61453 -14.47690 -14.33019 -14.31716 -14.14969 -13.95810 -13.77432 -13.57404 -13.09815 -12.93293 -12.36028 -12.06121 -11.91215 -11.78771 -11.49538 -11.17716 -10.98978 -10.82462 -10.67783 -10.64099 -10.46476 -10.33556 -10.09131 -9.85832 -9.73709 -9.19481 -9.02403 -8.29073 -7.54833 -5.92480 -3.90677 1.37068 1.48186 2.66372 3.25555 3.37729 3.42135 3.45046 3.66980 3.70539 4.25977 4.52812 4.64546 4.72605 4.87374 5.24768 5.28817 5.35587 5.43040 5.44466 5.56806 5.65842 5.71943 5.75261 5.79085 5.88738 5.97105 5.98938 6.07824 6.12427 6.23033 6.40056 6.53381 6.54577 6.60466 6.71875 6.92589 7.12982 7.49916 7.63845 7.86084 7.96266 8.08906 8.54217 9.16027 9.71510 11.19419 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002755 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.245900 B =10161.539212 C =10880.130527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.071 0.929 4 C 0.029 3.971 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.509 5.509 14 C 0.053 3.947 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.098 4.098 18 H 0.091 0.909 19 C 0.121 3.879 20 N -0.693 5.693 21 C 0.481 3.519 22 O -0.480 6.480 23 C 0.450 3.550 24 F -0.154 7.154 25 F -0.168 7.168 26 F -0.167 7.167 27 C 0.062 3.938 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.016 0.984 32 H 0.022 0.978 33 H 0.258 0.742 34 H 0.023 0.977 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.412 0.588 43 H 0.072 0.928 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 -0.216 21.000 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.020 4.020 3 H 0.089 0.911 4 C -0.008 4.008 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.232 5.232 14 C -0.075 4.075 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.117 4.117 18 H 0.109 0.891 19 C -0.001 4.001 20 N -0.345 5.345 21 C 0.259 3.741 22 O -0.352 6.352 23 C 0.392 3.608 24 F -0.136 7.136 25 F -0.149 7.149 26 F -0.148 7.148 27 C -0.067 4.067 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.248 0.752 43 H 0.091 0.909 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.548 0.363 20.904 21.206 hybrid contribution 0.597 -0.451 0.117 0.757 sum -2.952 -0.088 21.021 21.228 Atomic orbital electron populations 1.22527 0.99796 1.01287 1.00742 1.21918 0.90011 0.98467 0.91613 0.91123 1.19230 0.96448 0.95145 0.90001 1.21148 0.91688 1.37339 1.02940 0.92035 1.25013 0.97990 0.95930 0.95929 1.69951 1.35311 1.40964 1.08243 0.86695 0.86363 0.78149 0.76937 1.20400 1.21685 1.20498 1.61999 1.59251 1.01351 1.00632 1.22121 0.95536 0.90243 0.99557 1.21576 1.02246 0.97895 0.93653 1.21665 1.00707 0.94654 0.98205 1.21472 1.02570 0.95164 0.92508 0.89058 1.21709 0.96893 0.98284 0.83237 1.45963 1.46275 1.36016 1.06268 1.20214 0.84274 0.85328 0.84325 1.90888 1.34816 1.26068 1.83465 1.20311 0.78276 0.76862 0.85352 1.93270 1.91581 1.78856 1.49846 1.93271 1.91780 1.33591 1.96283 1.93279 1.30984 1.95702 1.94858 1.21945 0.97046 0.97738 0.89953 0.94117 0.92505 0.92950 0.96541 0.95991 0.93234 0.95894 0.89008 0.92027 0.90793 0.92219 0.92526 0.90098 0.90402 0.75186 0.90925 0.95202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.50 37.15 0.32 -2.66 16 2 C 0.09 1.66 2.30 -67.71 -0.16 1.51 16 3 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 4 C 0.03 0.69 4.27 -27.88 -0.12 0.58 16 5 C -0.49 -13.24 8.83 -34.44 -0.30 -13.55 16 6 H 0.06 1.65 7.73 -52.49 -0.41 1.24 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.51 -8.59 4.32 -226.69 -0.98 -9.57 16 14 C 0.05 0.85 4.63 -3.83 -0.02 0.83 16 15 C -0.12 -1.48 6.09 -26.65 -0.16 -1.64 16 16 C -0.11 -1.16 5.13 -26.61 -0.14 -1.29 16 17 C -0.10 -1.02 2.39 -90.54 -0.22 -1.24 16 18 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 19 C 0.12 1.10 5.07 -4.04 -0.02 1.08 16 20 N -0.69 -5.69 5.31 -60.29 -0.32 -6.01 16 21 C 0.48 4.77 7.36 -10.99 -0.08 4.69 16 22 O -0.48 -6.31 16.61 5.55 0.09 -6.22 16 23 C 0.45 3.98 3.43 36.00 0.12 4.11 16 24 F -0.15 -1.57 16.92 2.25 0.04 -1.53 16 25 F -0.17 -1.39 17.30 2.25 0.04 -1.35 16 26 F -0.17 -1.43 17.30 2.25 0.04 -1.39 16 27 C 0.06 0.81 4.33 -3.84 -0.02 0.80 16 28 H 0.04 0.57 6.67 -51.93 -0.35 0.23 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.84 6.51 -51.92 -0.34 0.51 16 31 H 0.02 0.42 6.10 -51.93 -0.32 0.10 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.02 0.35 6.61 -51.93 -0.34 0.00 16 35 H 0.09 1.75 5.97 -51.93 -0.31 1.44 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.46 7.25 -51.93 -0.38 0.09 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.41 2.59 7.67 -40.82 -0.31 2.28 16 43 H 0.07 0.95 8.07 -51.92 -0.42 0.53 16 44 H 0.03 0.38 6.75 -51.93 -0.35 0.03 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -30.02 360.52 -7.29 -37.31 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.45 Total: -1.81 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -0.89 Total: -5.47 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.56 Total: -41.43 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: 0.09 Total: -6.22 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.12 Total: -4.27 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.02 -7.29 -37.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839607907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.373 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds