Wall clock time and date at job start Tue Mar 31 2020 13:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47307 * 2 1 4 4 C 1.53004 * 109.47265 * 239.99868 * 2 1 3 5 5 C 1.50704 * 109.46997 * 175.54867 * 4 2 1 6 6 H 1.08002 * 120.00051 * 4.87461 * 5 4 2 7 7 C 1.37878 * 119.99987 * 184.86840 * 5 4 2 8 8 N 1.31509 * 119.99523 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99987 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47112 * 60.00371 * 9 7 5 11 11 H 1.48500 * 109.47384 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47598 * 300.00634 * 9 7 5 13 13 N 1.46903 * 109.46939 * 119.99940 * 2 1 3 14 14 C 1.46852 * 111.00146 * 58.42758 * 13 2 1 15 15 C 1.53030 * 109.52480 * 174.15754 * 14 13 2 16 16 C 1.53123 * 109.27765 * 59.17880 * 15 14 13 17 17 C 1.53117 * 109.16219 * 302.34498 * 16 15 14 18 18 H 1.08993 * 109.50703 * 297.71176 * 17 16 15 19 19 C 1.53002 * 109.50385 * 177.62896 * 17 16 15 20 20 N 1.46502 * 109.46898 * 65.00264 * 19 17 16 21 21 C 1.34770 * 120.00436 * 179.97438 * 20 19 17 22 22 O 1.21286 * 119.99440 * 359.97438 * 21 20 19 23 23 C 1.50697 * 120.00291 * 180.02562 * 21 20 19 24 24 F 1.39907 * 109.47146 * 180.02562 * 23 21 20 25 25 F 1.39897 * 109.47015 * 299.99574 * 23 21 20 26 26 F 1.39899 * 109.47568 * 60.00064 * 23 21 20 27 27 C 1.46840 * 111.00258 * 294.21682 * 13 2 1 28 28 H 1.08995 * 109.47642 * 300.00049 * 1 2 3 29 29 H 1.09002 * 109.47282 * 59.99952 * 1 2 3 30 30 H 1.09009 * 109.47217 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46856 * 295.54861 * 4 2 1 32 32 H 1.08996 * 109.46784 * 55.55383 * 4 2 1 33 33 H 0.97005 * 119.99613 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.46114 * 294.17892 * 14 13 2 35 35 H 1.09005 * 109.45934 * 54.14654 * 14 13 2 36 36 H 1.08997 * 109.50364 * 179.11965 * 15 14 13 37 37 H 1.09005 * 109.50874 * 299.20197 * 15 14 13 38 38 H 1.08999 * 109.51980 * 62.24787 * 16 15 14 39 39 H 1.09000 * 109.52342 * 182.37681 * 16 15 14 40 40 H 1.08998 * 109.47152 * 184.99991 * 19 17 16 41 41 H 1.08999 * 109.47074 * 305.00478 * 19 17 16 42 42 H 0.97003 * 119.99792 * 359.97438 * 20 19 17 43 43 H 1.09007 * 109.46179 * 305.85650 * 27 13 2 44 44 H 1.09005 * 109.46145 * 65.81952 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5430 -0.6265 -1.3056 6 1 4.0864 -0.1734 -0.4896 7 6 4.2243 -1.1183 -2.3987 8 7 3.5624 -1.6696 -3.3924 9 14 6.0872 -1.0001 -2.4688 10 1 6.6734 -1.7360 -1.3199 11 1 6.5735 -1.5960 -3.7391 12 1 6.4956 0.4261 -2.4034 13 7 2.0195 -0.6925 1.1995 14 6 1.5182 -2.0718 1.2524 15 6 2.1618 -2.8050 2.4313 16 6 1.8229 -2.0688 3.7305 17 6 2.3128 -0.6215 3.6304 18 1 3.3967 -0.6112 3.5162 19 6 1.9258 0.1378 4.9011 20 7 2.6374 -0.4335 6.0472 21 6 2.4517 0.0792 7.2796 22 8 1.6956 1.0139 7.4398 23 6 3.1842 -0.5081 8.4584 24 9 2.8302 0.1861 9.6204 25 9 2.8382 -1.8564 8.5977 26 9 4.5635 -0.3995 8.2517 27 6 1.6648 0.0484 2.4166 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7432 -1.7693 -1.2102 32 1 1.6130 -0.2555 -2.1374 33 1 4.0418 -2.0160 -4.1613 34 1 0.4357 -2.0601 1.3792 35 1 1.7696 -2.5854 0.3244 36 1 1.7777 -3.8239 2.4797 37 1 3.2434 -2.8298 2.2980 38 1 0.7438 -2.0783 3.8836 39 1 2.3142 -2.5635 4.5683 40 1 2.1954 1.1883 4.7930 41 1 0.8510 0.0531 5.0618 42 1 3.2424 -1.1809 5.9189 43 1 2.0225 1.0748 2.3342 44 1 0.5815 0.0502 2.5379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839607907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:03 Heat of formation + Delta-G solvation = -215.201768 kcal Electronic energy + Delta-G solvation = -28117.309110 eV Core-core repulsion = 23653.318838 eV Total energy + Delta-G solvation = -4463.990272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.42275 -48.93305 -48.92439 -41.23473 -40.30725 -37.40093 -35.55806 -34.36845 -32.49048 -31.28579 -29.27387 -29.11329 -26.56649 -25.59648 -24.39208 -23.29230 -22.55371 -21.20775 -20.17727 -20.00129 -19.85915 -19.68950 -18.30545 -17.44117 -17.07552 -16.68566 -16.51312 -16.27983 -15.76416 -15.67548 -15.59479 -15.36541 -15.30942 -15.06596 -15.02819 -15.02067 -14.80226 -14.50631 -14.45149 -14.00934 -13.83530 -13.62140 -13.16929 -13.09670 -12.87691 -12.77168 -12.55391 -12.39069 -12.01041 -11.80208 -11.66916 -11.55392 -11.40088 -11.13873 -11.05766 -10.85913 -10.50271 -10.43983 -8.85418 -8.07880 -6.12547 0.60569 0.74213 1.44002 1.45872 1.53353 1.96083 2.49101 2.53612 2.96167 3.01344 3.13325 3.28881 3.74869 3.80962 3.95510 4.23449 4.28962 4.39366 4.46413 4.49062 4.51746 4.60592 4.62400 4.75266 4.84196 4.88236 4.94115 5.01482 5.10009 5.13617 5.23573 5.26664 5.28336 5.36638 5.56059 5.57567 5.74605 5.83181 5.93132 6.35903 6.44884 6.51882 6.58971 7.02375 7.53659 9.04011 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002755 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.245900 B =10161.539212 C =10880.130527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 H 0.064 0.936 4 C 0.034 3.966 5 C -0.498 4.498 6 H 0.061 0.939 7 C -0.006 4.006 8 N -0.942 5.942 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.271 1.271 13 N -0.527 5.527 14 C 0.056 3.944 15 C -0.111 4.111 16 C -0.108 4.108 17 C -0.087 4.087 18 H 0.086 0.914 19 C 0.130 3.870 20 N -0.680 5.680 21 C 0.485 3.515 22 O -0.515 6.515 23 C 0.460 3.540 24 F -0.162 7.162 25 F -0.161 7.161 26 F -0.163 7.163 27 C 0.061 3.939 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.049 0.951 31 H -0.003 1.003 32 H -0.010 1.010 33 H 0.258 0.742 34 H 0.033 0.967 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.423 0.577 43 H 0.073 0.927 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 -0.210 23.318 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 H 0.082 0.918 4 C -0.003 4.003 5 C -0.536 4.536 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.584 5.584 9 Si 0.781 3.219 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.196 1.196 13 N -0.251 5.251 14 C -0.072 4.072 15 C -0.149 4.149 16 C -0.146 4.146 17 C -0.106 4.106 18 H 0.104 0.896 19 C 0.007 3.993 20 N -0.332 5.332 21 C 0.263 3.737 22 O -0.390 6.390 23 C 0.402 3.598 24 F -0.144 7.144 25 F -0.143 7.143 26 F -0.144 7.144 27 C -0.067 4.067 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.015 0.985 32 H 0.008 0.992 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.262 0.738 43 H 0.091 0.909 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.111 0.352 23.235 23.444 hybrid contribution 0.452 -0.477 -0.634 0.913 sum -2.658 -0.125 22.600 22.757 Atomic orbital electron populations 1.22388 0.97475 1.01502 1.01933 1.21583 0.91832 0.97272 0.90581 0.91773 1.19087 0.95285 0.94307 0.91610 1.21484 0.93149 1.36366 1.02611 0.92071 1.25853 1.02740 0.95810 0.95733 1.70090 1.37106 1.42301 1.08927 0.85650 0.80770 0.78456 0.76999 1.19483 1.21649 1.19630 1.61880 1.60010 1.01955 1.01265 1.22042 0.96393 0.89758 0.99012 1.21531 1.00947 0.98676 0.93767 1.21640 1.01581 0.94000 0.97342 1.21319 1.02004 0.95383 0.91914 0.89552 1.21560 0.97195 0.97986 0.82583 1.45862 1.45859 1.35895 1.05580 1.20289 0.83803 0.84830 0.84764 1.90880 1.36458 1.27659 1.84022 1.20043 0.78234 0.76904 0.84650 1.93257 1.91688 1.79140 1.50285 1.93288 1.91750 1.33040 1.96212 1.93292 1.30652 1.95705 1.94792 1.22021 0.98043 0.97566 0.89108 0.91339 0.92850 0.93188 0.98529 0.99182 0.93361 0.94902 0.93354 0.90640 0.92347 0.91314 0.89828 0.90175 0.89885 0.73828 0.90857 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.50 8.50 71.98 0.61 -4.89 16 2 C 0.10 3.66 2.30 44.91 0.10 3.76 16 3 H 0.06 2.51 8.07 -2.39 -0.02 2.49 16 4 C 0.03 1.72 4.27 29.85 0.13 1.85 16 5 C -0.50 -27.39 8.83 25.60 0.23 -27.16 16 6 H 0.06 3.30 7.73 -2.91 -0.02 3.28 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 9 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 N -0.53 -17.50 4.32 -871.12 -3.77 -21.26 16 14 C 0.06 1.76 4.63 86.32 0.40 2.16 16 15 C -0.11 -2.66 6.09 30.65 0.19 -2.48 16 16 C -0.11 -1.82 5.13 30.67 0.16 -1.66 16 17 C -0.09 -1.57 2.39 -10.74 -0.03 -1.59 16 18 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 19 C 0.13 1.95 5.07 86.38 0.44 2.39 16 20 N -0.68 -9.08 5.31 -463.06 -2.46 -11.54 16 21 C 0.49 8.50 7.36 87.66 0.64 9.15 16 22 O -0.52 -12.67 16.61 -3.05 -0.05 -12.72 16 23 C 0.46 7.14 3.43 71.23 0.24 7.38 16 24 F -0.16 -3.06 16.92 44.97 0.76 -2.30 16 25 F -0.16 -2.26 17.30 44.97 0.78 -1.48 16 26 F -0.16 -2.41 17.30 44.97 0.78 -1.63 16 27 C 0.06 1.47 4.33 86.33 0.37 1.84 16 28 H 0.07 1.78 6.67 -2.39 -0.02 1.77 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.59 6.51 -2.38 -0.02 1.57 16 31 H 0.00 -0.19 6.10 -2.39 -0.01 -0.20 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 34 H 0.03 0.96 6.61 -2.39 -0.02 0.94 16 35 H 0.05 1.93 5.97 -2.38 -0.01 1.92 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.01 7.25 -2.39 -0.02 0.99 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.42 3.81 7.67 -92.71 -0.71 3.10 16 43 H 0.07 1.76 8.07 -2.38 -0.02 1.74 16 44 H 0.04 0.92 6.75 -2.38 -0.02 0.90 16 Total: -1.00 -66.43 360.52 2.62 -63.81 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.31 Total: 6.52 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 3.95 Total: -9.10 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -5.94 Total: -89.60 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.05 Total: -12.72 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 2.32 Total: -5.40 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -66.43 2.62 -63.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839607907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.389 kcal (2) G-P(sol) polarization free energy of solvation -66.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds