Wall clock time and date at job start Tue Mar 31 2020 14:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46941 * 2 1 4 4 C 1.46500 * 119.99862 * 274.23968 * 3 2 1 5 5 C 1.50699 * 109.47440 * 269.99949 * 4 3 2 6 6 H 1.08006 * 119.99783 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99869 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00341 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99747 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47081 * 89.99971 * 9 7 5 11 11 H 1.48495 * 109.47328 * 209.99782 * 9 7 5 12 12 H 1.48501 * 109.47263 * 330.00522 * 9 7 5 13 13 C 1.34784 * 120.00067 * 94.24566 * 3 2 1 14 14 O 1.21621 * 119.99717 * 174.94339 * 13 3 2 15 15 C 1.47279 * 119.99630 * 354.94253 * 13 3 2 16 16 C 1.37994 * 120.88578 * 60.88078 * 15 13 3 17 17 N 1.34347 * 120.37346 * 180.28349 * 16 15 13 18 18 C 1.46502 * 118.80413 * 179.71900 * 17 16 15 19 19 C 1.53002 * 109.46653 * 93.36845 * 18 17 16 20 20 O 1.42908 * 109.46909 * 179.97438 * 19 18 17 21 21 C 1.42899 * 113.99985 * 179.97438 * 20 19 18 22 22 C 1.35574 * 122.39068 * 359.70049 * 17 16 15 23 23 C 1.50698 * 119.10191 * 180.02562 * 22 17 16 24 24 C 1.34867 * 121.80115 * 0.02562 * 22 17 16 25 25 C 1.41671 * 119.33837 * 359.97438 * 24 22 17 26 26 O 1.22082 * 121.06910 * 180.02562 * 25 24 22 27 27 H 1.09000 * 109.46926 * 299.99962 * 1 2 3 28 28 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 29 29 H 1.08996 * 109.46860 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47410 * 240.00196 * 2 1 3 31 31 H 1.09002 * 109.47388 * 119.99731 * 2 1 3 32 32 H 1.08998 * 109.47144 * 30.00840 * 4 3 2 33 33 H 1.09005 * 109.46806 * 150.00123 * 4 3 2 34 34 H 0.97000 * 119.99943 * 179.97438 * 8 7 5 35 35 H 1.08000 * 119.81218 * 359.96897 * 16 15 13 36 36 H 1.08992 * 109.47329 * 213.36608 * 18 17 16 37 37 H 1.08997 * 109.47070 * 333.36860 * 18 17 16 38 38 H 1.09005 * 109.47246 * 299.99776 * 19 18 17 39 39 H 1.08997 * 109.47370 * 60.00199 * 19 18 17 40 40 H 1.08995 * 109.47166 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.46977 * 300.00482 * 21 20 19 42 42 H 1.08995 * 109.46963 * 59.99970 * 21 20 19 43 43 H 1.08998 * 109.47398 * 264.75360 * 23 22 17 44 44 H 1.09001 * 109.47130 * 24.75414 * 23 22 17 45 45 H 1.09002 * 109.46992 * 144.75116 * 23 22 17 46 46 H 1.07998 * 120.33104 * 179.97438 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1740 2.1031 -1.2653 5 6 3.5633 1.8784 -1.8042 6 1 4.2604 1.2594 -1.2590 7 6 3.9439 2.4622 -2.9938 8 7 3.0949 3.2155 -3.6580 9 14 5.6658 2.1830 -3.6622 10 1 5.6687 0.9830 -4.5370 11 1 6.0901 3.3694 -4.4481 12 1 6.6074 1.9746 -2.5330 13 6 2.3244 1.9878 1.1641 14 8 2.8160 3.1002 1.1592 15 6 2.0635 1.3035 2.4418 16 6 2.6738 0.1022 2.7395 17 7 2.4239 -0.5160 3.9059 18 6 3.0859 -1.7931 4.1838 19 6 4.3774 -1.5389 4.9638 20 8 5.0228 -2.7846 5.2355 21 6 6.2460 -2.6589 5.9635 22 6 1.5819 -0.0008 4.8351 23 6 1.3560 -0.7570 6.1189 24 6 0.9408 1.1699 4.6420 25 6 1.1499 1.8853 3.4372 26 8 0.5863 2.9482 3.2297 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.4415 1.7373 -1.9848 33 1 2.0174 3.1687 -1.0973 34 1 3.3629 3.6265 -4.4948 35 1 3.3521 -0.3461 2.0287 36 1 2.4229 -2.4249 4.7749 37 1 3.3212 -2.2924 3.2440 38 1 5.0404 -0.9070 4.3727 39 1 4.1420 -1.0395 5.9036 40 1 6.6736 -3.6477 6.1290 41 1 6.9477 -2.0508 5.3926 42 1 6.0498 -2.1821 6.9238 43 1 0.4606 -1.3716 6.0259 44 1 2.2158 -1.3958 6.3205 45 1 1.2281 -0.0504 6.9391 46 1 0.2747 1.5582 5.3983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647191618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:45 Heat of formation + Delta-G solvation = -70.000948 kcal Electronic energy + Delta-G solvation = -28048.160834 eV Core-core repulsion = 24132.323683 eV Total energy + Delta-G solvation = -3915.837152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42233 -38.98062 -38.29064 -37.56489 -35.11079 -33.61389 -33.26680 -32.54570 -29.98684 -29.67338 -28.43745 -26.82419 -26.64390 -24.35172 -23.72586 -23.12163 -22.51836 -21.34912 -19.08844 -17.86579 -17.51648 -16.67751 -16.64170 -16.32234 -16.27416 -16.07823 -15.48794 -15.27139 -14.79468 -14.31554 -14.25087 -14.17777 -13.71383 -13.43170 -13.30228 -13.27394 -13.21100 -13.03259 -12.72022 -12.36571 -12.12059 -12.06136 -12.00902 -11.78999 -11.68307 -11.54572 -11.15700 -10.84978 -10.65024 -10.50907 -10.29134 -10.07508 -9.56715 -9.47601 -9.34543 -8.76032 -8.37602 -7.89897 -7.52747 -5.97481 -4.02186 1.08429 1.27325 2.06090 3.25283 3.32578 3.39604 3.42972 3.47859 3.78775 4.01538 4.03874 4.15743 4.32733 4.48160 4.52943 4.60859 4.67665 4.79336 4.82469 4.90243 4.93097 4.98404 5.08566 5.19068 5.24469 5.33638 5.37252 5.39430 5.43174 5.69102 5.73819 5.81718 5.87532 6.08810 6.30880 6.38227 6.44440 6.56428 6.60079 6.77169 7.18456 7.56026 7.64913 7.99141 8.27834 8.30838 8.52773 8.97379 9.22108 9.62334 11.10604 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.003877 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.268996 B = 7220.219465 C = 8648.668642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.249 3.751 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.571 3.429 14 O -0.521 6.521 15 C -0.265 4.265 16 C 0.147 3.853 17 N -0.468 5.468 18 C 0.088 3.912 19 C 0.039 3.961 20 O -0.388 6.388 21 C 0.032 3.968 22 C 0.159 3.841 23 C -0.131 4.131 24 C -0.275 4.275 25 C 0.410 3.590 26 O -0.496 6.496 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.171 0.829 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 -18.479 21.691 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.356 3.644 14 O -0.396 6.396 15 C -0.275 4.275 16 C 0.020 3.980 17 N -0.158 5.158 18 C -0.034 4.034 19 C -0.039 4.039 20 O -0.306 6.306 21 C -0.064 4.064 22 C 0.053 3.947 23 C -0.188 4.188 24 C -0.300 4.300 25 C 0.297 3.703 26 O -0.379 6.379 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.188 0.812 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.321 -17.536 21.357 27.635 hybrid contribution 1.191 0.010 -0.389 1.253 sum 0.871 -17.526 20.967 27.341 Atomic orbital electron populations 1.22171 0.96778 1.01018 1.02599 1.21501 0.93925 0.84487 1.01940 1.48196 1.63494 1.13267 1.07680 1.19263 0.96635 0.93155 0.77987 1.21421 0.98330 1.30660 1.05837 0.92548 1.24934 0.97452 0.94993 0.96761 1.69937 1.35071 1.32273 1.16019 0.86512 0.84556 0.77593 0.78815 1.20718 1.21107 1.19984 1.17379 0.79019 0.85615 0.82399 1.90780 1.42632 1.19496 1.86700 1.22801 1.07117 0.97154 1.00459 1.22073 0.97098 0.92221 0.86576 1.42419 1.38054 1.20571 1.14709 1.21948 0.94063 0.83781 1.03599 1.22942 0.94098 0.87146 0.99700 1.87800 1.37873 1.28559 1.76328 1.22807 0.85456 1.03102 0.95046 1.20214 0.89940 0.94158 0.90372 1.21230 1.03749 1.00882 0.92897 1.22149 1.08232 0.97087 1.02483 1.18202 0.80725 0.85985 0.85357 1.90792 1.46339 1.21567 1.79181 0.93003 0.91933 0.92533 0.90076 0.92172 0.94902 0.93914 0.92753 0.81245 0.87379 0.87263 0.91917 0.92193 0.89098 0.93548 0.93771 0.89119 0.90350 0.88926 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 37.16 0.38 -2.19 16 2 C 0.11 1.78 5.95 -4.04 -0.02 1.75 16 3 N -0.59 -13.49 2.46 -176.38 -0.43 -13.93 16 4 C 0.25 6.83 5.14 -5.19 -0.03 6.80 16 5 C -0.52 -15.15 9.39 -34.44 -0.32 -15.47 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 9 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.57 13.55 6.89 -12.58 -0.09 13.46 16 14 O -0.52 -15.12 16.74 5.26 0.09 -15.03 16 15 C -0.26 -4.82 5.12 -102.72 -0.53 -5.34 16 16 C 0.15 1.83 7.88 -16.54 -0.13 1.70 16 17 N -0.47 -4.14 2.58 -112.39 -0.29 -4.43 16 18 C 0.09 0.48 5.25 -4.04 -0.02 0.46 16 19 C 0.04 0.24 5.96 37.16 0.22 0.46 16 20 O -0.39 -2.66 10.70 -35.23 -0.38 -3.03 16 21 C 0.03 0.16 11.01 101.05 1.11 1.27 16 22 C 0.16 1.43 6.61 -82.14 -0.54 0.88 16 23 C -0.13 -0.58 9.11 36.00 0.33 -0.25 16 24 C -0.27 -3.52 9.60 -39.47 -0.38 -3.90 16 25 C 0.41 7.68 6.97 -34.68 -0.24 7.44 16 26 O -0.50 -11.77 17.55 4.84 0.08 -11.69 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 31 H 0.06 0.81 4.36 -51.93 -0.23 0.58 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.49 16 33 H 0.04 1.35 7.50 -51.93 -0.39 0.96 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.17 1.82 7.24 -52.49 -0.38 1.44 16 36 H 0.11 0.39 6.47 -51.93 -0.34 0.05 16 37 H 0.11 0.51 7.90 -51.93 -0.41 0.10 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.32 7.06 -51.93 -0.37 -0.05 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.25 4.96 -51.93 -0.26 -0.01 16 45 H 0.09 0.34 8.09 -51.93 -0.42 -0.08 16 46 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -40.71 383.81 -6.76 -47.47 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -6.98 Total: -4.48 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -0.36 Total: 8.75 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.01 Total: -44.87 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.20 Total: -29.75 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -40.71 -6.76 -47.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647191618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.531 kcal (2) G-P(sol) polarization free energy of solvation -40.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds