Wall clock time and date at job start Tue Mar 31 2020 14:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46941 * 2 1 4 4 C 1.46500 * 119.99862 * 274.23968 * 3 2 1 5 5 C 1.50699 * 109.47440 * 269.99949 * 4 3 2 6 6 H 1.08006 * 119.99783 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99869 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00341 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99747 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47081 * 89.99971 * 9 7 5 11 11 H 1.48495 * 109.47328 * 209.99782 * 9 7 5 12 12 H 1.48501 * 109.47263 * 330.00522 * 9 7 5 13 13 C 1.34784 * 120.00067 * 94.24566 * 3 2 1 14 14 O 1.21621 * 119.99717 * 174.94339 * 13 3 2 15 15 C 1.47279 * 119.99630 * 354.94253 * 13 3 2 16 16 C 1.37994 * 120.88578 * 60.88078 * 15 13 3 17 17 N 1.34347 * 120.37346 * 180.28349 * 16 15 13 18 18 C 1.46502 * 118.80413 * 179.71900 * 17 16 15 19 19 C 1.53002 * 109.46653 * 93.36845 * 18 17 16 20 20 O 1.42908 * 109.46909 * 179.97438 * 19 18 17 21 21 C 1.42899 * 113.99985 * 179.97438 * 20 19 18 22 22 C 1.35574 * 122.39068 * 359.70049 * 17 16 15 23 23 C 1.50698 * 119.10191 * 180.02562 * 22 17 16 24 24 C 1.34867 * 121.80115 * 0.02562 * 22 17 16 25 25 C 1.41671 * 119.33837 * 359.97438 * 24 22 17 26 26 O 1.22082 * 121.06910 * 180.02562 * 25 24 22 27 27 H 1.09000 * 109.46926 * 299.99962 * 1 2 3 28 28 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 29 29 H 1.08996 * 109.46860 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47410 * 240.00196 * 2 1 3 31 31 H 1.09002 * 109.47388 * 119.99731 * 2 1 3 32 32 H 1.08998 * 109.47144 * 30.00840 * 4 3 2 33 33 H 1.09005 * 109.46806 * 150.00123 * 4 3 2 34 34 H 0.97000 * 119.99943 * 179.97438 * 8 7 5 35 35 H 1.08000 * 119.81218 * 359.96897 * 16 15 13 36 36 H 1.08992 * 109.47329 * 213.36608 * 18 17 16 37 37 H 1.08997 * 109.47070 * 333.36860 * 18 17 16 38 38 H 1.09005 * 109.47246 * 299.99776 * 19 18 17 39 39 H 1.08997 * 109.47370 * 60.00199 * 19 18 17 40 40 H 1.08995 * 109.47166 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.46977 * 300.00482 * 21 20 19 42 42 H 1.08995 * 109.46963 * 59.99970 * 21 20 19 43 43 H 1.08998 * 109.47398 * 264.75360 * 23 22 17 44 44 H 1.09001 * 109.47130 * 24.75414 * 23 22 17 45 45 H 1.09002 * 109.46992 * 144.75116 * 23 22 17 46 46 H 1.07998 * 120.33104 * 179.97438 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1740 2.1031 -1.2653 5 6 3.5633 1.8784 -1.8042 6 1 4.2604 1.2594 -1.2590 7 6 3.9439 2.4622 -2.9938 8 7 3.0949 3.2155 -3.6580 9 14 5.6658 2.1830 -3.6622 10 1 5.6687 0.9830 -4.5370 11 1 6.0901 3.3694 -4.4481 12 1 6.6074 1.9746 -2.5330 13 6 2.3244 1.9878 1.1641 14 8 2.8160 3.1002 1.1592 15 6 2.0635 1.3035 2.4418 16 6 2.6738 0.1022 2.7395 17 7 2.4239 -0.5160 3.9059 18 6 3.0859 -1.7931 4.1838 19 6 4.3774 -1.5389 4.9638 20 8 5.0228 -2.7846 5.2355 21 6 6.2460 -2.6589 5.9635 22 6 1.5819 -0.0008 4.8351 23 6 1.3560 -0.7570 6.1189 24 6 0.9408 1.1699 4.6420 25 6 1.1499 1.8853 3.4372 26 8 0.5863 2.9482 3.2297 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.4415 1.7373 -1.9848 33 1 2.0174 3.1687 -1.0973 34 1 3.3629 3.6265 -4.4948 35 1 3.3521 -0.3461 2.0287 36 1 2.4229 -2.4249 4.7749 37 1 3.3212 -2.2924 3.2440 38 1 5.0404 -0.9070 4.3727 39 1 4.1420 -1.0395 5.9036 40 1 6.6736 -3.6477 6.1290 41 1 6.9477 -2.0508 5.3926 42 1 6.0498 -2.1821 6.9238 43 1 0.4606 -1.3716 6.0259 44 1 2.2158 -1.3958 6.3205 45 1 1.2281 -0.0504 6.9391 46 1 0.2747 1.5582 5.3983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647191618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:44 Heat of formation + Delta-G solvation = -100.867095 kcal Electronic energy + Delta-G solvation = -28049.499291 eV Core-core repulsion = 24132.323683 eV Total energy + Delta-G solvation = -3917.175608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.44916 -40.52657 -39.23574 -38.58732 -36.96079 -35.06189 -34.36872 -34.03892 -31.64802 -30.57248 -29.51324 -28.44362 -27.14499 -25.62363 -25.00223 -24.32452 -23.94246 -22.50658 -20.49691 -19.05080 -18.55275 -18.49456 -17.66878 -17.52916 -17.31941 -16.93659 -16.84491 -16.34620 -16.23762 -15.58656 -15.55415 -15.33873 -14.74307 -14.71976 -14.57201 -14.50390 -14.22877 -13.93972 -13.75789 -13.67890 -13.53380 -13.29319 -13.13022 -12.88815 -12.70806 -12.59896 -12.52021 -12.42019 -12.19711 -12.14554 -11.92607 -11.72976 -11.03918 -10.70027 -10.65005 -10.46749 -10.33399 -9.50528 -9.08168 -8.21243 -6.37347 -0.06075 0.22837 1.21355 1.36232 1.41182 1.51215 1.77929 2.25550 2.42085 2.63290 2.79111 3.07863 3.29884 3.47758 3.59251 3.70241 3.87342 3.96677 4.05943 4.15197 4.25168 4.34583 4.37525 4.49678 4.51246 4.54846 4.60643 4.66724 4.72528 4.76073 4.82947 4.88613 4.91070 4.91415 4.99441 5.13133 5.16796 5.30441 5.33492 5.56933 5.64708 5.78403 5.84567 6.04947 6.07507 6.68770 6.75001 7.01864 7.27177 7.45316 8.86774 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.003877 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.268996 B = 7220.219465 C = 8648.668642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.598 5.598 4 C 0.264 3.736 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.976 3.024 10 H -0.258 1.258 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.564 3.436 14 O -0.597 6.597 15 C -0.321 4.321 16 C 0.199 3.801 17 N -0.448 5.448 18 C 0.081 3.919 19 C 0.037 3.963 20 O -0.397 6.397 21 C 0.026 3.974 22 C 0.196 3.804 23 C -0.128 4.128 24 C -0.297 4.297 25 C 0.390 3.610 26 O -0.584 6.584 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.024 0.976 33 H -0.018 1.018 34 H 0.267 0.733 35 H 0.198 0.802 36 H 0.145 0.855 37 H 0.129 0.871 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -24.172 24.233 34.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.328 5.328 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.799 3.201 10 H -0.182 1.182 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.353 3.647 14 O -0.478 6.478 15 C -0.331 4.331 16 C 0.068 3.932 17 N -0.134 5.134 18 C -0.039 4.039 19 C -0.041 4.041 20 O -0.316 6.316 21 C -0.070 4.070 22 C 0.088 3.912 23 C -0.185 4.185 24 C -0.320 4.320 25 C 0.284 3.716 26 O -0.475 6.475 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.042 0.958 33 H 0.000 1.000 34 H 0.076 0.924 35 H 0.214 0.786 36 H 0.163 0.837 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.137 0.863 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.237 -23.364 23.953 33.484 hybrid contribution 0.760 1.559 -1.051 2.028 sum 1.997 -21.804 22.902 31.685 Atomic orbital electron populations 1.22107 0.95596 1.03390 1.00668 1.21876 0.94911 0.81317 1.04068 1.48226 1.63249 1.15348 1.06010 1.18711 0.96431 0.90451 0.80103 1.21681 0.98758 1.31085 1.06268 0.92078 1.25984 1.02313 0.94306 0.96980 1.70090 1.37548 1.33095 1.16524 0.85301 0.78339 0.78204 0.78236 1.18227 1.20983 1.19446 1.18240 0.77230 0.84971 0.84264 1.90705 1.46036 1.22997 1.88046 1.22167 1.11866 1.00363 0.98697 1.22214 0.93803 0.89508 0.87684 1.42904 1.36420 1.21013 1.13015 1.22390 0.94433 0.81566 1.05499 1.22925 0.93907 0.87061 1.00185 1.87773 1.38464 1.28648 1.76680 1.22953 0.84839 1.03930 0.95284 1.20869 0.86557 0.92461 0.91303 1.21470 1.05959 1.01226 0.89827 1.21997 1.10729 0.98565 1.00750 1.18932 0.80023 0.85479 0.87128 1.90742 1.50382 1.25243 1.81123 0.94463 0.94438 0.87782 0.89510 0.88141 0.95765 0.99958 0.92430 0.78584 0.83699 0.85328 0.93238 0.90985 0.88002 0.93994 0.92695 0.86335 0.87896 0.87529 0.81876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 10.24 71.98 0.74 -4.11 16 2 C 0.10 3.31 5.95 86.38 0.51 3.82 16 3 N -0.60 -28.77 2.46 -830.19 -2.04 -30.81 16 4 C 0.26 15.68 5.14 85.63 0.44 16.12 16 5 C -0.54 -32.47 9.39 25.60 0.24 -32.23 16 6 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 7 C 0.00 0.16 5.46 84.65 0.46 0.62 16 8 N -0.93 -59.28 13.29 21.45 0.28 -59.00 16 9 Si 0.98 45.91 29.54 68.60 2.03 47.94 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 C 0.56 28.86 6.89 86.62 0.60 29.46 16 14 O -0.60 -38.29 16.74 -4.10 -0.07 -38.36 16 15 C -0.32 -12.05 5.12 -18.63 -0.10 -12.14 16 16 C 0.20 4.44 7.88 84.25 0.66 5.10 16 17 N -0.45 -5.77 2.58 -509.50 -1.31 -7.08 16 18 C 0.08 0.35 5.25 86.38 0.45 0.81 16 19 C 0.04 0.25 5.96 71.98 0.43 0.68 16 20 O -0.40 -3.50 10.70 -148.98 -1.59 -5.09 16 21 C 0.03 0.16 11.01 113.37 1.25 1.41 16 22 C 0.20 2.66 6.61 41.21 0.27 2.93 16 23 C -0.13 -0.29 9.11 71.24 0.65 0.36 16 24 C -0.30 -7.33 9.60 22.34 0.21 -7.12 16 25 C 0.39 15.54 6.97 25.45 0.18 15.71 16 26 O -0.58 -30.89 17.55 -5.58 -0.10 -30.99 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.09 2.79 8.10 -2.39 -0.02 2.77 16 31 H 0.10 2.42 4.36 -2.39 -0.01 2.41 16 32 H 0.02 1.45 8.07 -2.39 -0.02 1.43 16 33 H -0.02 -1.25 7.50 -2.38 -0.02 -1.27 16 34 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.20 3.40 7.24 -2.91 -0.02 3.38 16 36 H 0.15 -0.19 6.47 -2.39 -0.02 -0.21 16 37 H 0.13 0.28 7.90 -2.39 -0.02 0.26 16 38 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.07 0.34 7.06 -2.39 -0.02 0.33 16 40 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.10 -0.16 4.96 -2.39 -0.01 -0.17 16 45 H 0.11 0.15 8.09 -2.39 -0.02 0.13 16 46 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -104.88 383.81 5.18 -99.70 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 0.98 Total: 2.26 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 7.00 Total: 21.42 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -3.07 Total: -96.88 kcal Atomic # 8 Polarization: -72.68 SS G_CDS: -1.76 Total: -74.44 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -104.88 5.18 -99.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647191618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.164 kcal (2) G-P(sol) polarization free energy of solvation -104.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds