Wall clock time and date at job start Tue Mar 31 2020 13:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47039 * 2 1 4 4 C 1.50697 * 109.47375 * 239.99369 * 2 1 3 5 5 O 1.21281 * 120.00498 * 263.76118 * 4 2 1 6 6 N 1.34777 * 120.00024 * 83.75637 * 4 2 1 7 7 C 1.46928 * 120.62905 * 5.66359 * 6 4 2 8 8 C 1.53190 * 108.77677 * 233.58064 * 7 6 4 9 9 C 1.53036 * 109.31272 * 305.36637 * 8 7 6 10 10 C 1.53042 * 109.53890 * 61.36616 * 9 8 7 11 11 H 1.08998 * 109.52425 * 58.59860 * 10 9 8 12 12 C 1.52996 * 109.49981 * 178.68123 * 10 9 8 13 13 N 1.46501 * 109.47250 * 294.83597 * 12 10 9 14 14 C 1.46501 * 120.00018 * 269.99915 * 13 12 10 15 15 C 1.36936 * 119.99725 * 90.00058 * 13 12 10 16 16 H 1.08001 * 119.99879 * 335.96092 * 15 13 12 17 17 C 1.38814 * 120.00046 * 155.97275 * 15 13 12 18 18 N 1.31618 * 120.00142 * 157.96440 * 17 15 13 19 19 Si 1.86801 * 119.99487 * 337.68874 * 17 15 13 20 20 H 1.48498 * 109.47295 * 84.86934 * 19 17 15 21 21 H 1.48511 * 109.46814 * 204.86630 * 19 17 15 22 22 H 1.48492 * 109.47320 * 324.86306 * 19 17 15 23 23 C 1.46923 * 120.63182 * 185.63480 * 6 4 2 24 24 C 1.53000 * 109.46918 * 119.99304 * 2 1 3 25 25 F 1.39904 * 109.47166 * 180.02562 * 24 2 1 26 26 F 1.39901 * 109.47451 * 300.00322 * 24 2 1 27 27 F 1.39901 * 109.46913 * 60.00281 * 24 2 1 28 28 H 1.09007 * 109.46866 * 184.66882 * 1 2 3 29 29 H 1.09001 * 109.47509 * 304.67056 * 1 2 3 30 30 H 1.09005 * 109.47116 * 64.67399 * 1 2 3 31 31 H 1.09002 * 109.58510 * 353.37098 * 7 6 4 32 32 H 1.09002 * 109.58443 * 113.65483 * 7 6 4 33 33 H 1.09008 * 109.49448 * 65.31389 * 8 7 6 34 34 H 1.08993 * 109.50055 * 185.37841 * 8 7 6 35 35 H 1.08992 * 109.46431 * 301.34337 * 9 8 7 36 36 H 1.09000 * 109.46086 * 181.37868 * 9 8 7 37 37 H 1.09003 * 109.47692 * 174.83529 * 12 10 9 38 38 H 1.09005 * 109.47115 * 54.83563 * 12 10 9 39 39 H 1.08997 * 109.46900 * 268.66344 * 14 13 12 40 40 H 1.08999 * 109.46995 * 28.66537 * 14 13 12 41 41 H 1.08998 * 109.47049 * 148.66395 * 14 13 12 42 42 H 0.97003 * 119.99630 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.58865 * 6.63358 * 23 6 4 44 44 H 1.08996 * 109.58963 * 246.20392 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.3422 -1.8816 -1.1704 6 7 2.1374 -0.0446 -2.3974 7 6 1.8849 1.4015 -2.4595 8 6 0.8381 1.6731 -3.5445 9 6 1.3075 1.0597 -4.8656 10 6 1.4532 -0.4551 -4.7034 11 1 0.4971 -0.8828 -4.4014 12 6 1.8908 -1.0714 -6.0336 13 7 0.8296 -0.8921 -7.0276 14 6 -0.2120 -1.9111 -7.1790 15 6 0.8113 0.2280 -7.8151 16 1 1.2988 1.1317 -7.4800 17 6 0.1660 0.2022 -9.0438 18 7 -0.2355 1.3254 -9.6001 19 14 -0.1257 -1.4262 -9.9114 20 1 -1.3755 -2.0432 -9.3991 21 1 -0.2517 -1.1930 -11.3726 22 1 1.0182 -2.3370 -9.6524 23 6 2.5071 -0.7509 -3.6316 24 6 2.0399 -0.7211 1.2493 25 9 3.4390 -0.7206 1.2497 26 9 1.5736 -0.0616 2.3916 27 9 1.5736 -2.0401 1.2494 28 1 -0.3633 -1.0243 0.0837 29 1 -0.3634 0.5846 0.8452 30 1 -0.3633 0.4396 -0.9289 31 1 1.5114 1.7489 -1.4962 32 1 2.8102 1.9238 -2.7027 33 1 -0.1124 1.2258 -3.2531 34 1 0.7115 2.7487 -3.6669 35 1 2.2698 1.4893 -5.1438 36 1 0.5759 1.2726 -5.6451 37 1 2.0831 -2.1354 -5.8955 38 1 2.8000 -0.5799 -6.3801 39 1 0.0943 -2.6342 -7.9349 40 1 -0.3621 -2.4214 -6.2276 41 1 -1.1432 -1.4358 -7.4872 42 1 -0.6868 1.3073 -10.4586 43 1 2.5441 -1.8236 -3.4417 44 1 3.4825 -0.4042 -3.9728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752517707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:38 Heat of formation + Delta-G solvation = -167.656170 kcal Electronic energy + Delta-G solvation = -29073.535178 eV Core-core repulsion = 24611.606638 eV Total energy + Delta-G solvation = -4461.928540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.29417 -47.82829 -47.67943 -40.51676 -37.90698 -35.87463 -34.48413 -32.69015 -31.83381 -30.92237 -26.88737 -26.68046 -25.92983 -25.52128 -23.32796 -22.48973 -21.29146 -19.87838 -19.26981 -18.85407 -18.55047 -17.56148 -17.19203 -16.74127 -15.74175 -15.43467 -15.34814 -14.71369 -14.64726 -14.48676 -14.26061 -14.17140 -13.99580 -13.89947 -13.84090 -13.76878 -13.51560 -13.21962 -13.05995 -12.91533 -12.69564 -12.42333 -12.27766 -12.17038 -11.99288 -11.73865 -11.36500 -10.95708 -10.77884 -10.64922 -10.47459 -10.26698 -10.06669 -9.92765 -9.89181 -9.44568 -8.73683 -8.58532 -7.02213 -5.98327 -3.32282 2.16490 2.36998 2.80154 3.34409 3.43140 3.49361 3.52162 3.72233 3.76051 4.25183 4.46102 4.53374 4.54203 4.74487 4.87246 4.99215 5.07679 5.11003 5.20705 5.30802 5.34268 5.47366 5.56153 5.61484 5.63194 5.81867 5.92336 5.99929 6.02391 6.22465 6.24803 6.37056 6.42687 6.47875 6.63242 6.69468 6.88669 7.00858 7.17965 7.85209 7.91682 8.28270 8.92118 9.71275 10.04371 11.17330 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.028455 B = 0.002980 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.772292 B = 9394.385470 C = 9719.819070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.165 4.165 3 H 0.134 0.866 4 C 0.521 3.479 5 O -0.525 6.525 6 N -0.597 5.597 7 C 0.100 3.900 8 C -0.134 4.134 9 C -0.113 4.113 10 C -0.117 4.117 11 H 0.066 0.934 12 C 0.157 3.843 13 N -0.609 5.609 14 C 0.105 3.895 15 C -0.264 4.264 16 H 0.092 0.908 17 C 0.024 3.976 18 N -0.907 5.907 19 Si 0.890 3.110 20 H -0.288 1.288 21 H -0.307 1.307 22 H -0.280 1.280 23 C 0.117 3.883 24 C 0.471 3.529 25 F -0.179 7.179 26 F -0.182 7.182 27 F -0.166 7.166 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.057 0.943 39 H 0.007 0.993 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.262 0.738 43 H 0.089 0.911 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 0.951 20.985 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 H 0.152 0.848 4 C 0.307 3.693 5 O -0.401 6.401 6 N -0.330 5.330 7 C -0.022 4.022 8 C -0.172 4.172 9 C -0.151 4.151 10 C -0.139 4.139 11 H 0.085 0.915 12 C 0.030 3.970 13 N -0.333 5.333 14 C -0.040 4.040 15 C -0.392 4.392 16 H 0.110 0.890 17 C -0.175 4.175 18 N -0.550 5.550 19 Si 0.721 3.279 20 H -0.215 1.215 21 H -0.236 1.236 22 H -0.206 1.206 23 C -0.005 4.005 24 C 0.416 3.584 25 F -0.161 7.161 26 F -0.163 7.163 27 F -0.147 7.147 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.025 0.975 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.017 0.380 20.870 21.090 hybrid contribution -0.148 -0.820 -0.413 0.930 sum 2.869 -0.440 20.457 20.661 Atomic orbital electron populations 1.21820 0.88807 1.04983 1.04960 1.22685 1.01798 1.02758 0.91480 0.84790 1.19678 0.78586 0.87024 0.84048 1.90796 1.49019 1.15752 1.84494 1.48038 1.67715 1.09260 1.07947 1.21968 1.00115 0.79932 1.00217 1.21959 0.97938 1.01396 0.95911 1.21641 1.02779 0.94051 0.96614 1.22166 0.98232 0.97375 0.96125 0.91514 1.20730 0.91514 0.97224 0.87543 1.44122 1.25681 1.22372 1.41078 1.21358 0.92744 0.91983 0.97922 1.18941 1.33944 0.89106 0.97189 0.89040 1.25197 0.99062 0.96291 0.96932 1.69849 1.40442 1.25976 1.18770 0.86970 0.78008 0.85140 0.77748 1.21542 1.23577 1.20605 1.21806 0.98291 0.97982 0.82455 1.19848 0.75682 0.78220 0.84633 1.93205 1.29694 1.96433 1.96720 1.93182 1.88539 1.80886 1.53742 1.93234 1.88141 1.36734 1.96598 0.90340 0.89888 0.89459 0.90371 0.90741 0.91814 0.90756 0.92507 0.88228 0.94224 0.92463 0.97522 0.94745 0.92637 0.92800 0.89274 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.79 37.16 0.33 -0.79 16 2 C -0.16 -1.51 1.87 -91.77 -0.17 -1.68 16 3 H 0.13 0.84 6.30 -51.93 -0.33 0.51 16 4 C 0.52 6.59 6.55 -10.99 -0.07 6.52 16 5 O -0.52 -8.61 14.59 5.56 0.08 -8.53 16 6 N -0.60 -7.04 2.97 -172.76 -0.51 -7.56 16 7 C 0.10 0.92 6.21 -3.71 -0.02 0.89 16 8 C -0.13 -1.48 6.08 -26.61 -0.16 -1.65 16 9 C -0.11 -1.70 4.43 -26.69 -0.12 -1.82 16 10 C -0.12 -1.78 2.54 -90.50 -0.23 -2.01 16 11 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 12 C 0.16 2.83 5.17 -4.04 -0.02 2.81 16 13 N -0.61 -13.60 2.60 -181.12 -0.47 -14.07 16 14 C 0.10 2.24 8.35 59.85 0.50 2.74 16 15 C -0.26 -6.87 8.60 -15.06 -0.13 -7.00 16 16 H 0.09 2.47 6.82 -52.49 -0.36 2.12 16 17 C 0.02 0.67 5.22 -17.43 -0.09 0.58 16 18 N -0.91 -26.86 13.97 55.49 0.78 -26.09 16 19 Si 0.89 22.30 23.98 -169.99 -4.08 18.22 16 20 H -0.29 -6.96 6.47 56.52 0.37 -6.60 16 21 H -0.31 -7.89 7.11 56.52 0.40 -7.48 16 22 H -0.28 -7.02 6.84 56.52 0.39 -6.63 16 23 C 0.12 1.55 5.70 -3.71 -0.02 1.53 16 24 C 0.47 5.15 2.48 37.16 0.09 5.25 16 25 F -0.18 -2.20 16.95 2.25 0.04 -2.17 16 26 F -0.18 -1.77 16.88 2.25 0.04 -1.73 16 27 F -0.17 -2.17 15.37 2.25 0.03 -2.14 16 28 H 0.08 0.68 7.67 -51.93 -0.40 0.29 16 29 H 0.08 0.46 7.93 -51.93 -0.41 0.05 16 30 H 0.09 0.62 7.96 -51.93 -0.41 0.20 16 31 H 0.08 0.50 5.27 -51.93 -0.27 0.23 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.91 5.92 -51.93 -0.31 1.60 16 37 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 38 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 39 H 0.01 0.16 5.18 -51.93 -0.27 -0.11 16 40 H 0.03 0.63 8.06 -51.93 -0.42 0.21 16 41 H 0.06 1.26 6.34 -51.93 -0.33 0.93 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.09 1.29 7.04 -51.93 -0.37 0.93 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -31.42 347.47 -5.41 -36.83 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -6.43 Total: -3.39 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -0.12 Total: 5.39 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.21 Total: -47.72 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.11 Total: -6.04 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.08 Total: 18.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.42 -5.41 -36.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752517707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.825 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds