Wall clock time and date at job start Tue Mar 31 2020 13:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47039 * 2 1 4 4 C 1.50697 * 109.47375 * 239.99369 * 2 1 3 5 5 O 1.21281 * 120.00498 * 263.76118 * 4 2 1 6 6 N 1.34777 * 120.00024 * 83.75637 * 4 2 1 7 7 C 1.46928 * 120.62905 * 5.66359 * 6 4 2 8 8 C 1.53190 * 108.77677 * 233.58064 * 7 6 4 9 9 C 1.53036 * 109.31272 * 305.36637 * 8 7 6 10 10 C 1.53042 * 109.53890 * 61.36616 * 9 8 7 11 11 H 1.08998 * 109.52425 * 58.59860 * 10 9 8 12 12 C 1.52996 * 109.49981 * 178.68123 * 10 9 8 13 13 N 1.46501 * 109.47250 * 294.83597 * 12 10 9 14 14 C 1.46501 * 120.00018 * 269.99915 * 13 12 10 15 15 C 1.36936 * 119.99725 * 90.00058 * 13 12 10 16 16 H 1.08001 * 119.99879 * 335.96092 * 15 13 12 17 17 C 1.38814 * 120.00046 * 155.97275 * 15 13 12 18 18 N 1.31618 * 120.00142 * 157.96440 * 17 15 13 19 19 Si 1.86801 * 119.99487 * 337.68874 * 17 15 13 20 20 H 1.48498 * 109.47295 * 84.86934 * 19 17 15 21 21 H 1.48511 * 109.46814 * 204.86630 * 19 17 15 22 22 H 1.48492 * 109.47320 * 324.86306 * 19 17 15 23 23 C 1.46923 * 120.63182 * 185.63480 * 6 4 2 24 24 C 1.53000 * 109.46918 * 119.99304 * 2 1 3 25 25 F 1.39904 * 109.47166 * 180.02562 * 24 2 1 26 26 F 1.39901 * 109.47451 * 300.00322 * 24 2 1 27 27 F 1.39901 * 109.46913 * 60.00281 * 24 2 1 28 28 H 1.09007 * 109.46866 * 184.66882 * 1 2 3 29 29 H 1.09001 * 109.47509 * 304.67056 * 1 2 3 30 30 H 1.09005 * 109.47116 * 64.67399 * 1 2 3 31 31 H 1.09002 * 109.58510 * 353.37098 * 7 6 4 32 32 H 1.09002 * 109.58443 * 113.65483 * 7 6 4 33 33 H 1.09008 * 109.49448 * 65.31389 * 8 7 6 34 34 H 1.08993 * 109.50055 * 185.37841 * 8 7 6 35 35 H 1.08992 * 109.46431 * 301.34337 * 9 8 7 36 36 H 1.09000 * 109.46086 * 181.37868 * 9 8 7 37 37 H 1.09003 * 109.47692 * 174.83529 * 12 10 9 38 38 H 1.09005 * 109.47115 * 54.83563 * 12 10 9 39 39 H 1.08997 * 109.46900 * 268.66344 * 14 13 12 40 40 H 1.08999 * 109.46995 * 28.66537 * 14 13 12 41 41 H 1.08998 * 109.47049 * 148.66395 * 14 13 12 42 42 H 0.97003 * 119.99630 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.58865 * 6.63358 * 23 6 4 44 44 H 1.08996 * 109.58963 * 246.20392 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.3422 -1.8816 -1.1704 6 7 2.1374 -0.0446 -2.3974 7 6 1.8849 1.4015 -2.4595 8 6 0.8381 1.6731 -3.5445 9 6 1.3075 1.0597 -4.8656 10 6 1.4532 -0.4551 -4.7034 11 1 0.4971 -0.8828 -4.4014 12 6 1.8908 -1.0714 -6.0336 13 7 0.8296 -0.8921 -7.0276 14 6 -0.2120 -1.9111 -7.1790 15 6 0.8113 0.2280 -7.8151 16 1 1.2988 1.1317 -7.4800 17 6 0.1660 0.2022 -9.0438 18 7 -0.2355 1.3254 -9.6001 19 14 -0.1257 -1.4262 -9.9114 20 1 -1.3755 -2.0432 -9.3991 21 1 -0.2517 -1.1930 -11.3726 22 1 1.0182 -2.3370 -9.6524 23 6 2.5071 -0.7509 -3.6316 24 6 2.0399 -0.7211 1.2493 25 9 3.4390 -0.7206 1.2497 26 9 1.5736 -0.0616 2.3916 27 9 1.5736 -2.0401 1.2494 28 1 -0.3633 -1.0243 0.0837 29 1 -0.3634 0.5846 0.8452 30 1 -0.3633 0.4396 -0.9289 31 1 1.5114 1.7489 -1.4962 32 1 2.8102 1.9238 -2.7027 33 1 -0.1124 1.2258 -3.2531 34 1 0.7115 2.7487 -3.6669 35 1 2.2698 1.4893 -5.1438 36 1 0.5759 1.2726 -5.6451 37 1 2.0831 -2.1354 -5.8955 38 1 2.8000 -0.5799 -6.3801 39 1 0.0943 -2.6342 -7.9349 40 1 -0.3621 -2.4214 -6.2276 41 1 -1.1432 -1.4358 -7.4872 42 1 -0.6868 1.3073 -10.4586 43 1 2.5441 -1.8236 -3.4417 44 1 3.4825 -0.4042 -3.9728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752517707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:37 Heat of formation + Delta-G solvation = -187.227583 kcal Electronic energy + Delta-G solvation = -29074.383858 eV Core-core repulsion = 24611.606638 eV Total energy + Delta-G solvation = -4462.777220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.14229 -48.65560 -48.57914 -41.49992 -39.14319 -37.38145 -35.38688 -34.09059 -33.26235 -32.33043 -28.27635 -27.64131 -27.50559 -26.62115 -24.45246 -23.56976 -22.67043 -21.14750 -20.25961 -19.73161 -19.41671 -18.74497 -18.41524 -18.04396 -17.31677 -16.63291 -16.38267 -16.00166 -15.59359 -15.53946 -15.46778 -15.23613 -15.10432 -15.02469 -14.78311 -14.72112 -14.53845 -14.38467 -14.33160 -14.23781 -13.90469 -13.81507 -13.39630 -13.32313 -12.97896 -12.90180 -12.48203 -12.43707 -12.25384 -12.10413 -11.97408 -11.78391 -11.58159 -11.40068 -11.15088 -10.93927 -10.65853 -9.72090 -8.91525 -8.11549 -5.40270 1.27162 1.33726 1.43815 1.49606 1.51345 1.92906 2.46481 2.63693 2.90458 2.98011 3.11418 3.39439 3.47566 3.76412 3.82185 3.89483 4.02752 4.09900 4.20565 4.40091 4.47258 4.52704 4.55423 4.58661 4.65067 4.65934 4.73617 4.81981 4.88088 4.92597 4.93969 5.02850 5.08534 5.18969 5.32459 5.47841 5.58788 5.67621 5.91842 6.19142 6.25630 6.90648 6.96396 7.69381 8.04913 9.07654 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.028455 B = 0.002980 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.772292 B = 9394.385470 C = 9719.819070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.155 4.155 3 H 0.172 0.828 4 C 0.517 3.483 5 O -0.569 6.569 6 N -0.596 5.596 7 C 0.100 3.900 8 C -0.127 4.127 9 C -0.110 4.110 10 C -0.102 4.102 11 H 0.055 0.945 12 C 0.152 3.848 13 N -0.621 5.621 14 C 0.104 3.896 15 C -0.235 4.235 16 H 0.073 0.927 17 C -0.035 4.035 18 N -0.954 5.954 19 Si 0.941 3.059 20 H -0.275 1.275 21 H -0.319 1.319 22 H -0.278 1.278 23 C 0.125 3.875 24 C 0.466 3.534 25 F -0.190 7.190 26 F -0.173 7.173 27 F -0.183 7.183 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.005 0.995 40 H 0.067 0.933 41 H 0.038 0.962 42 H 0.258 0.742 43 H 0.077 0.923 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.092 1.267 23.285 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 H 0.189 0.811 4 C 0.304 3.696 5 O -0.448 6.448 6 N -0.327 5.327 7 C -0.021 4.021 8 C -0.165 4.165 9 C -0.148 4.148 10 C -0.124 4.124 11 H 0.074 0.926 12 C 0.026 3.974 13 N -0.345 5.345 14 C -0.041 4.041 15 C -0.365 4.365 16 H 0.091 0.909 17 C -0.229 4.229 18 N -0.601 5.601 19 Si 0.773 3.227 20 H -0.201 1.201 21 H -0.248 1.248 22 H -0.204 1.204 23 C 0.002 3.998 24 C 0.412 3.588 25 F -0.171 7.171 26 F -0.155 7.155 27 F -0.165 7.165 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.209 0.685 23.214 23.444 hybrid contribution -0.151 -0.905 -1.027 1.377 sum 3.058 -0.220 22.187 22.398 Atomic orbital electron populations 1.21886 0.87340 1.04613 1.06573 1.22758 1.02758 1.03684 0.88516 0.81069 1.20245 0.77704 0.86621 0.85003 1.90781 1.50888 1.17840 1.85288 1.48092 1.67161 1.10302 1.07174 1.22186 1.00308 0.78247 1.01357 1.21883 0.98436 1.01993 0.94154 1.21502 1.01354 0.94191 0.97724 1.21890 0.98184 0.97194 0.95088 0.92649 1.20937 0.90268 0.98500 0.87680 1.44274 1.27253 1.21627 1.41319 1.21366 0.91603 0.91548 0.99589 1.18968 1.31087 0.89664 0.96757 0.90911 1.25723 1.00570 0.98517 0.98118 1.69957 1.43115 1.27742 1.19291 0.86114 0.78401 0.82121 0.76091 1.20128 1.24799 1.20419 1.21561 0.97903 0.97690 0.82685 1.20147 0.75237 0.77776 0.85675 1.93184 1.30649 1.96439 1.96827 1.93197 1.88343 1.80507 1.53421 1.93201 1.88287 1.38238 1.96734 0.91995 0.87344 0.88533 0.86568 0.89253 0.91879 0.89189 0.92685 0.92891 0.92650 0.92758 0.97724 0.91456 0.94359 0.93265 0.90484 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.79 71.98 0.63 -1.06 16 2 C -0.16 -2.31 1.87 -11.54 -0.02 -2.34 16 3 H 0.17 1.22 6.30 -2.39 -0.02 1.21 16 4 C 0.52 11.83 6.55 87.66 0.57 12.40 16 5 O -0.57 -18.11 14.59 -3.03 -0.04 -18.16 16 6 N -0.60 -12.37 2.97 -818.89 -2.43 -14.80 16 7 C 0.10 1.42 6.21 86.36 0.54 1.95 16 8 C -0.13 -2.46 6.08 30.67 0.19 -2.27 16 9 C -0.11 -3.19 4.43 30.62 0.14 -3.06 16 10 C -0.10 -2.97 2.54 -10.71 -0.03 -3.00 16 11 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 12 C 0.15 5.32 5.17 86.38 0.45 5.76 16 13 N -0.62 -27.41 2.60 -726.93 -1.89 -29.30 16 14 C 0.10 4.29 8.35 127.77 1.07 5.36 16 15 C -0.24 -12.41 8.60 84.03 0.72 -11.68 16 16 H 0.07 4.06 6.82 -2.91 -0.02 4.04 16 17 C -0.03 -1.97 5.22 84.86 0.44 -1.52 16 18 N -0.95 -58.13 13.97 21.65 0.30 -57.83 16 19 Si 0.94 46.44 23.98 68.60 1.64 48.09 16 20 H -0.27 -12.81 6.47 99.48 0.64 -12.16 16 21 H -0.32 -16.19 7.11 99.48 0.71 -15.48 16 22 H -0.28 -13.46 6.84 99.48 0.68 -12.78 16 23 C 0.12 3.09 5.70 86.37 0.49 3.58 16 24 C 0.47 9.18 2.48 71.98 0.18 9.35 16 25 F -0.19 -4.33 16.95 44.97 0.76 -3.57 16 26 F -0.17 -2.89 16.88 44.97 0.76 -2.13 16 27 F -0.18 -4.64 15.37 44.97 0.69 -3.95 16 28 H 0.06 0.95 7.67 -2.38 -0.02 0.93 16 29 H 0.11 0.73 7.93 -2.39 -0.02 0.72 16 30 H 0.10 0.97 7.96 -2.38 -0.02 0.95 16 31 H 0.12 0.81 5.27 -2.39 -0.01 0.80 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.25 8.14 -2.38 -0.02 1.24 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 2.05 5.92 -2.39 -0.01 2.04 16 37 H 0.06 1.77 8.07 -2.39 -0.02 1.75 16 38 H 0.05 1.92 8.04 -2.38 -0.02 1.90 16 39 H 0.01 0.21 5.18 -2.39 -0.01 0.20 16 40 H 0.07 2.33 8.06 -2.39 -0.02 2.31 16 41 H 0.04 1.71 6.34 -2.39 -0.02 1.69 16 42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.08 2.15 7.04 -2.38 -0.02 2.13 16 44 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -70.65 347.47 6.08 -64.57 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 0.92 Total: 3.59 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 5.37 Total: 13.48 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -4.02 Total: -101.93 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.04 Total: -18.16 kcal Atomic # 9 Polarization: -11.86 SS G_CDS: 2.21 Total: -9.65 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.64 Total: 48.09 kcal Total: -70.65 6.08 -64.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752517707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.657 kcal (2) G-P(sol) polarization free energy of solvation -70.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds