Wall clock time and date at job start Tue Mar 31 2020 13:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46819 * 2 1 4 4 C 1.52991 * 109.47202 * 239.99477 * 2 1 3 5 5 C 1.50706 * 109.47350 * 65.00327 * 4 2 1 6 6 O 1.21288 * 119.99556 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00392 * 179.97438 * 5 4 2 8 8 C 1.46501 * 119.99958 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46878 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.51204 * 60.10239 * 9 8 7 11 11 C 1.53292 * 109.51389 * 180.25432 * 9 8 7 12 12 N 1.47224 * 108.40819 * 172.23283 * 11 9 8 13 13 C 1.36935 * 121.03419 * 129.46678 * 12 11 9 14 14 H 1.07997 * 119.99974 * 333.75308 * 13 12 11 15 15 C 1.38814 * 119.99854 * 153.76086 * 13 12 11 16 16 N 1.31625 * 119.99583 * 160.02348 * 15 13 12 17 17 Si 1.86793 * 120.00266 * 340.01698 * 15 13 12 18 18 H 1.48503 * 109.46760 * 91.88567 * 17 15 13 19 19 H 1.48497 * 109.47347 * 211.88792 * 17 15 13 20 20 H 1.48498 * 109.47201 * 331.89168 * 17 15 13 21 21 C 1.47155 * 117.98184 * 309.48312 * 12 11 9 22 22 C 1.53291 * 108.41547 * 50.52217 * 21 12 11 23 23 O 1.42959 * 109.22549 * 307.67341 * 22 21 12 24 24 C 1.50698 * 109.46731 * 119.99791 * 2 1 3 25 25 C 1.34522 * 125.78962 * 239.99920 * 24 2 1 26 26 C 1.41375 * 106.84079 * 180.02562 * 25 24 2 27 27 C 1.34512 * 106.84414 * 0.02562 * 26 25 24 28 28 O 1.34301 * 108.41925 * 359.73805 * 27 26 25 29 29 H 1.08995 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47433 * 300.00431 * 1 2 3 31 31 H 1.09000 * 109.46928 * 60.00195 * 1 2 3 32 32 H 1.09004 * 109.47258 * 305.00322 * 4 2 1 33 33 H 1.09002 * 109.47546 * 185.00257 * 4 2 1 34 34 H 0.97001 * 119.99703 * 359.97438 * 7 5 4 35 35 H 1.08995 * 109.46861 * 60.00176 * 8 7 5 36 36 H 1.08997 * 109.46931 * 299.99807 * 8 7 5 37 37 H 1.09001 * 109.68141 * 291.95043 * 11 9 8 38 38 H 1.09000 * 109.68082 * 52.49949 * 11 9 8 39 39 H 0.96991 * 119.99524 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.68404 * 290.77601 * 21 12 11 41 41 H 1.09003 * 109.68136 * 170.26175 * 21 12 11 42 42 H 1.08995 * 109.51432 * 67.60290 * 22 21 12 43 43 H 1.09005 * 109.51242 * 187.75583 * 22 21 12 44 44 H 1.07998 * 126.57525 * 0.04079 * 25 24 2 45 45 H 1.08003 * 126.57789 * 180.02562 * 26 25 24 46 46 H 1.07995 * 125.79060 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4766 6 8 1.0110 1.0869 -2.3634 7 7 1.9855 -0.3916 -3.7001 8 6 1.5975 0.3647 -4.8933 9 6 2.1076 -0.3566 -6.1424 10 1 1.6723 -1.3548 -6.1897 11 6 1.7076 0.4372 -7.3913 12 7 2.3655 -0.1712 -8.5594 13 6 1.6513 -0.4986 -9.6810 14 1 0.5971 -0.7201 -9.6043 15 6 2.2824 -0.5458 -10.9165 16 7 1.7383 -1.2190 -11.9080 17 14 3.9036 0.3462 -11.1719 18 1 5.0285 -0.5797 -10.8848 19 1 3.9946 0.8148 -12.5780 20 1 3.9765 1.5126 -10.2557 21 6 3.8144 -0.4176 -8.4853 22 6 4.1117 -1.1698 -7.1831 23 8 3.5325 -0.4592 -6.0862 24 6 2.0323 -0.7104 1.2305 25 6 2.8089 -0.1719 2.1879 26 6 3.0386 -1.1849 3.1469 27 6 2.3891 -2.2821 2.7180 28 8 1.7770 -1.9872 1.5596 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7199 -1.2950 33 1 3.1264 -0.7996 -1.2055 34 1 2.4899 -1.2151 -3.7905 35 1 2.0314 1.3635 -4.8473 36 1 0.5111 0.4421 -4.9370 37 1 0.6258 0.4001 -7.5190 38 1 2.0301 1.4731 -7.2867 39 1 2.1790 -1.2517 -12.7714 40 1 4.3491 0.5323 -8.4908 41 1 4.1284 -1.0205 -9.3374 42 1 3.6838 -2.1709 -7.2351 43 1 5.1902 -1.2409 -7.0419 44 1 3.1845 0.8402 2.2181 45 1 3.6233 -1.0951 4.0504 46 1 2.3613 -3.2369 3.2219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:53 Heat of formation + Delta-G solvation = -44.108184 kcal Electronic energy + Delta-G solvation = -26915.161358 eV Core-core repulsion = 23000.447001 eV Total energy + Delta-G solvation = -3914.714357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.86027 -39.97889 -38.79269 -35.68121 -34.91269 -34.42077 -33.19715 -31.79598 -31.33696 -29.32031 -28.39335 -27.47338 -25.63603 -23.33532 -23.20229 -22.09441 -21.90554 -20.77956 -20.21463 -19.76728 -17.73686 -17.18197 -16.86894 -16.35645 -16.27838 -16.06988 -15.59069 -15.42615 -14.87929 -14.61958 -14.26375 -14.10576 -13.88285 -13.64620 -13.43366 -13.27370 -13.09775 -12.92571 -12.88749 -12.44041 -12.35803 -11.95153 -11.77632 -11.63410 -11.54357 -11.29060 -11.23597 -10.90473 -10.47458 -10.33591 -10.19702 -9.92076 -9.81311 -9.59060 -9.47530 -9.05182 -8.74041 -8.64357 -7.09914 -6.04005 -3.41860 1.45526 2.33865 2.57571 2.70804 3.13766 3.23542 3.42489 3.45206 3.98489 4.30904 4.43695 4.44471 4.66502 4.70484 4.74929 4.78794 4.93024 5.12242 5.18977 5.26884 5.31954 5.35345 5.37680 5.51394 5.53926 5.60518 5.68335 5.72231 5.76287 5.82438 5.83323 5.87330 5.95676 6.07197 6.12643 6.15416 6.21488 6.38157 6.43814 6.45502 6.64663 6.87340 7.46530 7.52589 7.78805 8.16858 8.21325 8.78778 9.59742 9.95365 11.11496 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.032320 B = 0.002125 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.132250 B =13173.832883 C =13470.874787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.008 3.992 3 H 0.108 0.892 4 C -0.139 4.139 5 C 0.514 3.486 6 O -0.542 6.542 7 N -0.720 5.720 8 C 0.130 3.870 9 C 0.062 3.938 10 H 0.064 0.936 11 C 0.124 3.876 12 N -0.607 5.607 13 C -0.263 4.263 14 H 0.089 0.911 15 C 0.023 3.977 16 N -0.906 5.906 17 Si 0.885 3.115 18 H -0.288 1.288 19 H -0.302 1.302 20 H -0.271 1.271 21 C 0.088 3.912 22 C 0.050 3.950 23 O -0.386 6.386 24 C -0.001 4.001 25 C -0.212 4.212 26 C -0.214 4.214 27 C -0.047 4.047 28 O -0.173 6.173 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.404 0.596 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.035 0.965 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.086 0.914 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -1.830 27.211 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 H 0.126 0.874 4 C -0.179 4.179 5 C 0.300 3.700 6 O -0.421 6.421 7 N -0.371 5.371 8 C 0.006 3.994 9 C 0.003 3.997 10 H 0.082 0.918 11 C -0.002 4.002 12 N -0.332 5.332 13 C -0.391 4.391 14 H 0.106 0.894 15 C -0.176 4.176 16 N -0.549 5.549 17 Si 0.715 3.285 18 H -0.216 1.216 19 H -0.230 1.230 20 H -0.196 1.196 21 C -0.037 4.037 22 C -0.028 4.028 23 O -0.305 6.305 24 C -0.051 4.051 25 C -0.232 4.232 26 C -0.233 4.233 27 C -0.114 4.114 28 O -0.069 6.069 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.144 -1.246 27.036 27.149 hybrid contribution 1.368 -0.062 -0.379 1.421 sum 3.512 -1.308 26.656 26.918 Atomic orbital electron populations 1.21988 0.92962 1.02359 1.03806 1.19518 0.97267 0.97957 0.86302 0.87365 1.21755 1.03422 1.00591 0.92109 1.20476 0.79317 0.85663 0.84544 1.90678 1.40152 1.24586 1.86636 1.45939 1.57380 1.28072 1.05678 1.21414 0.99948 0.95846 0.82149 1.22860 0.82415 0.99566 0.94908 0.91761 1.21490 0.98012 0.94664 0.86065 1.44364 1.03310 1.71277 1.14242 1.18908 0.95291 1.41321 0.83579 0.89368 1.25256 0.98097 0.98860 0.95365 1.69821 1.40568 1.41068 1.03399 0.86953 0.84014 0.81152 0.76332 1.21576 1.22962 1.19557 1.22038 0.86350 0.98271 0.97081 1.23058 0.97358 0.94963 0.87427 1.87801 1.19632 1.77366 1.45734 1.22509 1.01068 0.82627 0.98935 1.21636 1.04227 1.01346 0.95950 1.21833 1.05547 0.93589 1.02307 1.24028 0.99256 1.00895 0.87236 1.84008 1.59097 1.28249 1.35559 0.92688 0.92462 0.89445 0.88339 0.88450 0.76120 0.90661 0.89926 0.90741 0.94709 0.92616 0.94733 0.90054 0.92987 0.89542 0.83498 0.83568 0.78224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.92 37.16 0.33 -1.14 16 2 C 0.01 0.08 2.44 -91.78 -0.22 -0.15 16 3 H 0.11 1.02 7.91 -51.93 -0.41 0.61 16 4 C -0.14 -1.21 5.16 -27.88 -0.14 -1.36 16 5 C 0.51 5.98 7.55 -10.98 -0.08 5.90 16 6 O -0.54 -7.96 13.97 5.55 0.08 -7.89 16 7 N -0.72 -8.28 5.45 -60.29 -0.33 -8.61 16 8 C 0.13 1.75 5.37 -4.04 -0.02 1.73 16 9 C 0.06 0.97 2.87 -26.58 -0.08 0.90 16 10 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 11 C 0.12 2.36 6.03 -3.50 -0.02 2.34 16 12 N -0.61 -14.09 2.84 -171.77 -0.49 -14.57 16 13 C -0.26 -7.18 10.10 -15.06 -0.15 -7.33 16 14 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 15 C 0.02 0.67 5.26 -17.43 -0.09 0.57 16 16 N -0.91 -27.23 13.97 55.49 0.78 -26.45 16 17 Si 0.89 22.00 24.28 -169.99 -4.13 17.87 16 18 H -0.29 -6.81 6.58 56.52 0.37 -6.44 16 19 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 20 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 21 C 0.09 1.87 4.38 -3.53 -0.02 1.85 16 22 C 0.05 0.85 6.98 37.31 0.26 1.11 16 23 O -0.39 -6.38 10.13 -35.23 -0.36 -6.73 16 24 C 0.00 -0.01 5.83 -35.62 -0.21 -0.22 16 25 C -0.21 -1.90 10.78 -39.70 -0.43 -2.33 16 26 C -0.21 -1.68 10.91 -39.71 -0.43 -2.12 16 27 C -0.05 -0.35 12.09 29.42 0.36 0.01 16 28 O -0.17 -1.66 10.65 5.71 0.06 -1.60 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.98 5.95 -51.93 -0.31 0.67 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 4.02 8.35 -40.82 -0.34 3.68 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.36 7.96 -51.93 -0.41 0.95 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.03 0.75 6.86 -51.93 -0.36 0.39 16 41 H 0.08 1.86 4.61 -51.93 -0.24 1.62 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 46 H 0.20 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -32.78 369.78 -6.95 -39.73 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.19 Total: 2.92 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.95 Total: -0.23 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.04 Total: -49.64 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.22 Total: -16.22 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.13 Total: 17.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.78 -6.95 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.382 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds