Wall clock time and date at job start Tue Mar 31 2020 13:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47078 * 2 1 4 4 C 1.52996 * 109.47085 * 119.99993 * 2 1 3 5 5 C 1.50701 * 109.47038 * 294.99737 * 4 2 1 6 6 O 1.21284 * 120.00104 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99919 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99754 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47196 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.50681 * 304.90184 * 9 8 7 11 11 C 1.52878 * 109.58514 * 184.88315 * 9 8 7 12 12 N 1.47149 * 108.60560 * 187.92402 * 11 9 8 13 13 C 1.36938 * 120.97922 * 230.49855 * 12 11 9 14 14 H 1.08001 * 120.00144 * 25.97272 * 13 12 11 15 15 C 1.38810 * 119.99920 * 206.24938 * 13 12 11 16 16 N 1.31623 * 119.99903 * 16.57158 * 15 13 12 17 17 Si 1.86801 * 119.99987 * 196.56316 * 15 13 12 18 18 H 1.48500 * 109.46872 * 94.39800 * 17 15 13 19 19 H 1.48505 * 109.47204 * 214.39607 * 17 15 13 20 20 H 1.48498 * 109.47400 * 334.40079 * 17 15 13 21 21 C 1.47150 * 118.03844 * 50.22376 * 12 11 9 22 22 C 1.53294 * 108.38616 * 309.71634 * 21 12 11 23 23 O 1.42956 * 109.51135 * 64.99744 * 9 8 7 24 24 C 1.50699 * 109.46805 * 239.99829 * 2 1 3 25 25 C 1.34518 * 125.78946 * 119.71999 * 24 2 1 26 26 C 1.41378 * 106.84292 * 179.88627 * 25 24 2 27 27 C 1.34521 * 106.83866 * 0.37300 * 26 25 24 28 28 O 1.34302 * 108.42049 * 359.76840 * 27 26 25 29 29 H 1.09000 * 109.47044 * 300.00144 * 1 2 3 30 30 H 1.08996 * 109.47162 * 59.99988 * 1 2 3 31 31 H 1.09000 * 109.47517 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47308 * 175.00505 * 4 2 1 33 33 H 1.08999 * 109.47364 * 54.99774 * 4 2 1 34 34 H 0.96992 * 120.00098 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47336 * 59.99988 * 8 7 5 36 36 H 1.09008 * 109.47258 * 299.99871 * 8 7 5 37 37 H 1.09001 * 109.61994 * 68.09890 * 11 9 8 38 38 H 1.09004 * 109.52363 * 307.68342 * 11 9 8 39 39 H 0.97001 * 119.99866 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.68005 * 69.44365 * 21 12 11 41 41 H 1.09008 * 109.68288 * 189.95500 * 21 12 11 42 42 H 1.08999 * 109.51449 * 172.22861 * 22 21 12 43 43 H 1.09005 * 109.51234 * 292.37785 * 22 21 12 44 44 H 1.08002 * 126.57614 * 0.02562 * 25 24 2 45 45 H 1.07996 * 126.58410 * 180.11966 * 26 25 24 46 46 H 1.07997 * 125.78842 * 179.79786 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4765 6 8 1.0109 1.0871 2.3633 7 7 1.9854 -0.3913 3.7001 8 6 1.5973 0.3651 4.8932 9 6 2.1085 -0.3554 6.1425 10 1 1.7452 -1.3831 6.1442 11 6 1.6023 0.3646 7.3925 12 7 2.2565 -0.2252 8.5713 13 6 1.5232 -0.6368 9.6521 14 1 0.4917 -0.9303 9.5247 15 6 2.1041 -0.6713 10.9123 16 7 3.2239 -0.0176 11.1390 17 14 1.2965 -1.6451 12.2867 18 1 1.8947 -3.0029 12.3488 19 1 1.5135 -0.9490 13.5804 20 1 -0.1606 -1.7578 12.0235 21 6 3.7211 -0.3653 8.5518 22 6 4.1236 -1.0547 7.2431 23 8 3.5381 -0.3544 6.1429 24 6 2.0322 -0.7105 -1.2305 25 6 2.8045 -0.1705 -2.1905 26 6 3.0378 -1.1848 -3.1473 27 6 2.3873 -2.2816 -2.7189 28 8 1.7801 -1.9884 -1.5574 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1263 -0.7994 1.2056 33 1 1.6053 -1.7198 1.2952 34 1 2.4898 -1.2148 3.7907 35 1 0.5110 0.4425 4.9370 36 1 2.0313 1.3640 4.8472 37 1 0.5221 0.2430 7.4727 38 1 1.8492 1.4244 7.3275 39 1 3.6300 -0.0421 12.0196 40 1 4.1849 0.6197 8.6057 41 1 4.0435 -0.9696 9.3999 42 1 5.2091 -1.0446 7.1451 43 1 3.7676 -2.0850 7.2499 44 1 3.1768 0.8428 -2.2228 45 1 3.6223 -1.0951 -4.0510 46 1 2.3586 -3.2362 -3.2233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:57 Heat of formation + Delta-G solvation = -50.498164 kcal Electronic energy + Delta-G solvation = -26823.325010 eV Core-core repulsion = 22908.333562 eV Total energy + Delta-G solvation = -3914.991447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.83688 -39.90745 -38.53436 -35.60084 -34.75403 -34.28528 -33.17393 -31.66833 -30.81084 -29.23878 -28.28609 -27.25785 -25.32560 -23.34662 -23.10643 -22.03229 -21.77024 -20.68809 -20.08153 -19.52095 -17.69843 -17.13625 -16.78050 -16.24848 -16.14365 -15.98215 -15.33693 -15.06644 -14.76619 -14.58465 -14.32446 -13.86255 -13.58144 -13.41114 -13.18430 -13.17032 -13.07471 -12.90417 -12.75849 -12.68712 -12.25218 -11.61790 -11.60173 -11.49660 -11.21420 -11.15167 -10.89384 -10.75652 -10.43884 -10.27993 -10.17398 -10.02384 -9.84748 -9.66594 -9.10616 -8.98681 -8.71454 -8.58202 -6.79554 -5.87757 -3.31791 1.47856 2.36205 2.62819 2.73252 3.20451 3.31896 3.39184 3.40698 4.19077 4.34291 4.40162 4.47808 4.69647 4.77492 4.81954 4.96322 5.10120 5.18339 5.29827 5.37976 5.40185 5.45861 5.48874 5.53774 5.62970 5.73238 5.78110 5.82968 5.85339 5.90143 6.00129 6.11112 6.16801 6.23820 6.26413 6.33177 6.44791 6.52050 6.71780 6.89657 7.06596 7.47828 7.52741 7.67392 7.81548 8.22470 8.29716 9.07785 9.70316 10.26984 11.20420 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.002038 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.631586 B =13735.734367 C =13921.988550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.008 3.992 3 H 0.109 0.891 4 C -0.139 4.139 5 C 0.513 3.487 6 O -0.543 6.543 7 N -0.720 5.720 8 C 0.130 3.870 9 C 0.065 3.935 10 H 0.058 0.942 11 C 0.121 3.879 12 N -0.594 5.594 13 C -0.256 4.256 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.907 3.093 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.278 1.278 21 C 0.139 3.861 22 C 0.039 3.961 23 O -0.390 6.390 24 C -0.001 4.001 25 C -0.213 4.213 26 C -0.213 4.213 27 C -0.047 4.047 28 O -0.173 6.173 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.403 0.597 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.030 0.970 39 H 0.255 0.745 40 H 0.028 0.972 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 -4.439 -24.807 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 H 0.127 0.873 4 C -0.179 4.179 5 C 0.300 3.700 6 O -0.421 6.421 7 N -0.371 5.371 8 C 0.006 3.994 9 C 0.005 3.995 10 H 0.076 0.924 11 C -0.006 4.006 12 N -0.318 5.318 13 C -0.385 4.385 14 H 0.087 0.913 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.203 1.203 21 C 0.013 3.987 22 C -0.038 4.038 23 O -0.309 6.309 24 C -0.051 4.051 25 C -0.232 4.232 26 C -0.233 4.233 27 C -0.115 4.115 28 O -0.069 6.069 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.238 0.762 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.614 -3.774 -24.642 24.937 hybrid contribution 0.113 -0.986 0.823 1.290 sum -0.501 -4.760 -23.819 24.295 Atomic orbital electron populations 1.21986 0.92985 1.02327 1.03800 1.19522 0.97245 0.97978 0.86308 0.87343 1.21755 1.03425 1.00565 0.92143 1.20468 0.79358 0.85670 0.84551 1.90674 1.40202 1.24587 1.86639 1.45981 1.57302 1.28005 1.05767 1.21420 0.99774 0.95966 0.82218 1.22723 0.82714 0.99152 0.94908 0.92416 1.21361 0.96996 0.95378 0.86855 1.44054 1.02283 1.70809 1.14627 1.19221 0.96310 1.37580 0.85372 0.91283 1.25065 0.98203 0.99296 0.97141 1.70037 1.20842 1.41910 1.21883 0.86209 0.78977 0.79681 0.81510 1.21403 1.21666 1.20315 1.21449 0.84093 0.98719 0.94403 1.23328 0.96792 0.94975 0.88728 1.87788 1.18658 1.76914 1.47562 1.22516 1.01138 0.82516 0.98927 1.21637 1.04252 1.01311 0.95965 1.21833 1.05461 0.93603 1.02359 1.24027 0.99335 1.00925 0.87181 1.84007 1.59397 1.28190 1.35335 0.89437 0.92475 0.92719 0.88451 0.88383 0.76240 0.90119 0.90643 0.91779 0.95255 0.93483 0.95341 0.88762 0.90030 0.94109 0.83487 0.83575 0.78241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.92 37.16 0.33 -1.19 16 2 C 0.01 0.08 2.44 -91.77 -0.22 -0.15 16 3 H 0.11 1.06 7.91 -51.93 -0.41 0.65 16 4 C -0.14 -1.27 5.16 -27.88 -0.14 -1.42 16 5 C 0.51 6.28 7.55 -10.98 -0.08 6.19 16 6 O -0.54 -8.29 13.96 5.55 0.08 -8.21 16 7 N -0.72 -8.82 5.50 -60.29 -0.33 -9.16 16 8 C 0.13 1.88 5.34 -4.04 -0.02 1.86 16 9 C 0.06 1.10 2.80 -26.79 -0.07 1.02 16 10 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 11 C 0.12 2.48 6.00 -3.75 -0.02 2.46 16 12 N -0.59 -14.64 3.05 -172.08 -0.53 -15.16 16 13 C -0.26 -6.86 9.65 -15.06 -0.15 -7.00 16 14 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 15 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 16 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 17 Si 0.91 21.24 29.59 -169.99 -5.03 16.21 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.14 3.26 5.44 -3.53 -0.02 3.24 16 22 C 0.04 0.74 6.99 37.31 0.26 1.00 16 23 O -0.39 -7.09 10.33 -35.23 -0.36 -7.46 16 24 C 0.00 -0.01 5.83 -35.62 -0.21 -0.21 16 25 C -0.21 -1.95 10.78 -39.70 -0.43 -2.38 16 26 C -0.21 -1.73 10.91 -39.70 -0.43 -2.16 16 27 C -0.05 -0.36 12.09 29.42 0.36 -0.01 16 28 O -0.17 -1.70 10.65 5.71 0.06 -1.64 16 29 H 0.09 1.01 5.95 -51.93 -0.31 0.70 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 4.29 8.47 -40.82 -0.35 3.94 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 2.42 6.15 -51.92 -0.32 2.10 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.20 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -31.83 376.76 -8.02 -39.86 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.27 Total: 3.78 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -0.94 Total: 1.22 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.24 Total: -49.44 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.23 Total: -17.31 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.83 -8.02 -39.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.640 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds