Wall clock time and date at job start Tue Mar 31 2020 13:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47029 * 2 1 4 4 C 1.52999 * 109.47047 * 120.00624 * 2 1 3 5 5 C 1.50697 * 109.47148 * 294.99505 * 4 2 1 6 6 O 1.21286 * 119.99839 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00380 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00451 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47393 * 179.97438 * 8 7 5 10 10 H 1.08989 * 109.51179 * 60.10162 * 9 8 7 11 11 C 1.53296 * 109.51177 * 180.25559 * 9 8 7 12 12 N 1.47150 * 108.38268 * 172.22439 * 11 9 8 13 13 C 1.36942 * 120.98360 * 129.44083 * 12 11 9 14 14 H 1.07995 * 120.00218 * 206.23119 * 13 12 11 15 15 C 1.38815 * 119.99578 * 26.23691 * 13 12 11 16 16 N 1.31618 * 120.00364 * 16.92131 * 15 13 12 17 17 Si 1.86798 * 119.99644 * 196.92709 * 15 13 12 18 18 H 1.48502 * 109.47282 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47498 * 119.99812 * 17 15 13 20 20 H 1.48503 * 109.47181 * 239.99731 * 17 15 13 21 21 C 1.47158 * 118.03692 * 309.45991 * 12 11 9 22 22 C 1.53296 * 108.38114 * 50.53924 * 21 12 11 23 23 O 1.42957 * 109.22129 * 307.69537 * 22 21 12 24 24 C 1.50706 * 109.46945 * 240.00435 * 2 1 3 25 25 C 1.34508 * 125.79293 * 119.71166 * 24 2 1 26 26 C 1.41381 * 106.84353 * 179.88877 * 25 24 2 27 27 C 1.34509 * 106.83842 * 0.37445 * 26 25 24 28 28 O 1.34305 * 108.42541 * 359.77299 * 27 26 25 29 29 H 1.08997 * 109.47627 * 59.99718 * 1 2 3 30 30 H 1.09000 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47142 * 299.99603 * 1 2 3 32 32 H 1.09000 * 109.46795 * 174.99732 * 4 2 1 33 33 H 1.08993 * 109.47693 * 54.99975 * 4 2 1 34 34 H 0.97007 * 119.99910 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.47147 * 59.99676 * 8 7 5 36 36 H 1.09004 * 109.47195 * 299.99605 * 8 7 5 37 37 H 1.09001 * 109.68153 * 291.94435 * 11 9 8 38 38 H 1.08999 * 109.68431 * 52.49909 * 11 9 8 39 39 H 0.96997 * 119.99931 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.68061 * 170.25485 * 21 12 11 41 41 H 1.08995 * 109.67994 * 290.77394 * 21 12 11 42 42 H 1.09000 * 109.51003 * 187.77374 * 22 21 12 43 43 H 1.09000 * 109.51775 * 67.61992 * 22 21 12 44 44 H 1.08007 * 126.57550 * 0.03206 * 25 24 2 45 45 H 1.07996 * 126.57742 * 180.12406 * 26 25 24 46 46 H 1.07998 * 125.78875 * 179.78570 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0568 2.4766 6 8 1.0110 1.0868 2.3633 7 7 1.9853 -0.3916 3.7000 8 6 1.5974 0.3646 4.8932 9 6 2.1075 -0.3567 6.1424 10 1 3.1939 -0.4334 6.1005 11 6 1.6965 0.4305 7.3919 12 7 2.0318 -0.3733 8.5780 13 6 2.7462 0.1646 9.6152 14 1 3.3402 -0.4752 10.2508 15 6 2.7066 1.5323 9.8495 16 7 1.7526 2.2643 9.3144 17 14 4.0074 2.3337 10.9242 18 1 4.9607 1.3000 11.4016 19 1 4.7399 3.3566 10.1353 20 1 3.3555 2.9816 12.0906 21 6 1.5772 -1.7723 8.6165 22 6 1.9940 -2.4523 7.3074 23 8 1.5383 -1.6668 6.2033 24 6 2.0323 -0.7103 -1.2306 25 6 2.8043 -0.1704 -2.1906 26 6 3.0376 -1.1846 -3.1475 27 6 2.3873 -2.2814 -2.7192 28 8 1.7801 -1.9884 -1.5576 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7996 1.2054 33 1 1.6054 -1.7199 1.2950 34 1 2.4892 -1.2156 3.7906 35 1 0.5111 0.4421 4.9370 36 1 2.0314 1.3634 4.8474 37 1 2.2376 1.3762 7.4245 38 1 0.6236 0.6215 7.3692 39 1 1.7253 3.2201 9.4778 40 1 2.0394 -2.2854 9.4600 41 1 0.4924 -1.8031 8.7178 42 1 1.5490 -3.4460 7.2555 43 1 3.0801 -2.5365 7.2705 44 1 3.1767 0.8430 -2.2229 45 1 3.6221 -1.0947 -4.0511 46 1 2.3585 -3.2359 -3.2236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753655677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:01 Heat of formation + Delta-G solvation = -50.383538 kcal Electronic energy + Delta-G solvation = -27019.014269 eV Core-core repulsion = 23104.027792 eV Total energy + Delta-G solvation = -3914.986477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.80176 -39.80433 -38.49515 -35.52370 -34.66931 -34.28607 -33.13971 -31.43488 -31.04223 -29.18350 -28.18575 -27.17876 -25.31032 -23.37438 -23.11525 -21.98959 -21.65220 -20.58928 -20.02633 -19.50958 -17.64416 -17.12604 -16.77581 -16.19654 -16.12097 -15.64598 -15.47127 -15.12550 -14.71859 -14.38099 -14.24180 -13.95671 -13.60898 -13.33665 -13.23555 -13.04139 -12.96617 -12.87849 -12.78840 -12.60557 -12.15453 -11.60196 -11.52208 -11.40687 -11.16224 -11.12461 -10.88554 -10.74577 -10.44483 -10.27732 -10.14278 -10.06694 -9.74280 -9.64753 -9.11098 -8.85308 -8.67846 -8.58623 -6.79408 -5.87965 -3.31744 1.51433 2.39406 2.72832 2.77297 3.29343 3.33210 3.39822 3.41635 4.21805 4.39782 4.41417 4.54255 4.74386 4.81108 4.87487 5.02725 5.16545 5.24294 5.32621 5.44778 5.45838 5.52350 5.57040 5.60363 5.67221 5.78617 5.83269 5.89152 5.90652 5.96143 6.00268 6.08959 6.19671 6.25905 6.27200 6.35680 6.47668 6.65876 6.75017 6.93282 7.03369 7.44332 7.64221 7.68021 7.80607 8.29349 8.33802 9.07305 9.70261 10.27128 11.20141 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.022857 B = 0.002268 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.704859 B =12341.002711 C =12796.379224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.008 3.992 3 H 0.108 0.892 4 C -0.138 4.138 5 C 0.512 3.488 6 O -0.542 6.542 7 N -0.719 5.719 8 C 0.132 3.868 9 C 0.055 3.945 10 H 0.055 0.945 11 C 0.152 3.848 12 N -0.595 5.595 13 C -0.256 4.256 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.289 1.289 21 C 0.109 3.891 22 C 0.050 3.950 23 O -0.390 6.390 24 C 0.001 3.999 25 C -0.214 4.214 26 C -0.214 4.214 27 C -0.048 4.048 28 O -0.173 6.173 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.402 0.598 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.031 0.969 39 H 0.256 0.744 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 -9.038 -21.252 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 H 0.127 0.873 4 C -0.178 4.178 5 C 0.298 3.702 6 O -0.420 6.420 7 N -0.370 5.370 8 C 0.008 3.992 9 C -0.005 4.005 10 H 0.073 0.927 11 C 0.026 3.974 12 N -0.318 5.318 13 C -0.386 4.386 14 H 0.087 0.913 15 C -0.197 4.197 16 N -0.545 5.545 17 Si 0.734 3.266 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.216 1.216 21 C -0.018 4.018 22 C -0.028 4.028 23 O -0.310 6.310 24 C -0.050 4.050 25 C -0.233 4.233 26 C -0.233 4.233 27 C -0.115 4.115 28 O -0.069 6.069 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.236 0.764 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.363 -8.373 -21.212 22.845 hybrid contribution 1.276 0.150 0.595 1.416 sum 2.639 -8.223 -20.617 22.353 Atomic orbital electron populations 1.21986 0.92950 1.02352 1.03824 1.19530 0.97302 0.97952 0.86301 0.87348 1.21749 1.03229 1.00649 0.92215 1.20457 0.79488 0.85715 0.84577 1.90680 1.40051 1.24668 1.86645 1.45996 1.57355 1.27837 1.05777 1.21421 1.01205 0.94729 0.81806 1.23152 0.96617 0.84485 0.96216 0.92656 1.21310 0.99004 0.94777 0.82346 1.44059 1.63596 1.07086 1.17103 1.19228 1.20179 0.91303 1.07843 0.91295 1.25066 0.97708 0.97644 0.99235 1.70025 1.30837 1.06044 1.47628 0.86194 0.81266 0.79316 0.79822 1.20231 1.21412 1.21593 1.21605 0.97358 0.87493 0.95314 1.23002 0.98084 0.93645 0.88040 1.87773 1.69346 1.26029 1.47819 1.22538 1.01016 0.82489 0.98914 1.21633 1.04353 1.01305 0.95988 1.21826 1.05492 0.93613 1.02345 1.24018 0.99363 1.00920 0.87222 1.84016 1.59366 1.28208 1.35305 0.92514 0.92714 0.89359 0.88625 0.88370 0.76356 0.90732 0.89992 0.88584 0.95057 0.93423 0.91979 0.95539 0.90015 0.93873 0.83498 0.83599 0.78263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.92 37.16 0.33 -1.34 16 2 C 0.01 0.08 2.44 -91.77 -0.22 -0.14 16 3 H 0.11 1.14 7.91 -51.93 -0.41 0.73 16 4 C -0.14 -1.38 5.16 -27.88 -0.14 -1.52 16 5 C 0.51 6.84 7.55 -10.99 -0.08 6.76 16 6 O -0.54 -9.01 13.97 5.55 0.08 -8.93 16 7 N -0.72 -9.73 5.45 -60.30 -0.33 -10.06 16 8 C 0.13 2.18 5.37 -4.04 -0.02 2.16 16 9 C 0.05 1.01 2.87 -26.58 -0.08 0.93 16 10 H 0.06 1.02 8.14 -51.94 -0.42 0.59 16 11 C 0.15 3.54 4.73 -3.53 -0.02 3.52 16 12 N -0.59 -14.64 3.05 -171.82 -0.52 -15.16 16 13 C -0.26 -6.87 9.65 -15.06 -0.15 -7.02 16 14 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 15 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 16 N -0.90 -25.67 11.14 55.49 0.62 -25.05 16 17 Si 0.90 21.22 29.59 -169.99 -5.03 16.20 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.11 2.22 6.74 -3.53 -0.02 2.20 16 22 C 0.05 0.86 6.98 37.31 0.26 1.12 16 23 O -0.39 -7.06 10.13 -35.23 -0.36 -7.41 16 24 C 0.00 0.01 5.83 -35.62 -0.21 -0.20 16 25 C -0.21 -2.05 10.78 -39.71 -0.43 -2.48 16 26 C -0.21 -1.80 10.91 -39.70 -0.43 -2.24 16 27 C -0.05 -0.38 12.09 29.41 0.36 -0.03 16 28 O -0.17 -1.78 10.65 5.69 0.06 -1.72 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 1.13 5.95 -51.93 -0.31 0.82 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.40 4.68 8.35 -40.82 -0.34 4.34 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.10 2.46 6.14 -51.93 -0.32 2.14 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 45 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.20 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -31.78 376.48 -8.01 -39.80 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.26 Total: 4.98 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.94 Total: 1.70 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.23 Total: -50.27 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.22 Total: -18.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.78 -8.01 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753655677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.588 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds