Wall clock time and date at job start Tue Mar 31 2020 13:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47052 * 2 1 4 4 C 1.52999 * 109.47339 * 120.00365 * 2 1 3 5 5 C 1.50692 * 109.46993 * 294.99989 * 4 2 1 6 6 O 1.21286 * 120.00481 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99934 * 179.97438 * 5 4 2 8 8 C 1.46508 * 120.00238 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47155 * 184.64452 * 8 7 5 10 10 N 1.46500 * 110.81921 * 301.81365 * 9 8 7 11 11 C 1.36944 * 119.99769 * 301.13384 * 10 9 8 12 12 H 1.08001 * 119.99938 * 355.17434 * 11 10 9 13 13 C 1.38814 * 119.99423 * 175.17610 * 11 10 9 14 14 N 1.31623 * 119.99257 * 180.02562 * 13 11 10 15 15 Si 1.86790 * 120.00324 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47154 * 90.00338 * 15 13 11 17 17 H 1.48499 * 109.47271 * 210.00034 * 15 13 11 18 18 H 1.48500 * 109.47347 * 330.00209 * 15 13 11 19 19 C 1.54890 * 110.75562 * 65.15347 * 9 8 7 20 20 C 1.54262 * 104.19610 * 156.25726 * 19 9 8 21 21 C 1.53879 * 106.59920 * 336.38408 * 20 19 9 22 22 C 1.54262 * 106.59625 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47108 * 240.00616 * 2 1 3 24 24 F 1.39909 * 109.46949 * 299.99801 * 23 2 1 25 25 F 1.39902 * 109.47209 * 59.99245 * 23 2 1 26 26 F 1.39898 * 109.47516 * 179.97438 * 23 2 1 27 27 H 1.08998 * 109.46966 * 299.99374 * 1 2 3 28 28 H 1.08993 * 109.47149 * 59.99574 * 1 2 3 29 29 H 1.09000 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46949 * 174.99626 * 4 2 1 31 31 H 1.09000 * 109.47042 * 55.00167 * 4 2 1 32 32 H 0.96998 * 120.00235 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.46679 * 64.64692 * 8 7 5 34 34 H 1.09002 * 109.47361 * 304.64865 * 8 7 5 35 35 H 0.96994 * 120.00003 * 121.13190 * 10 9 8 36 36 H 0.97001 * 119.99626 * 179.97438 * 14 13 11 37 37 H 1.08997 * 110.48617 * 37.57324 * 19 9 8 38 38 H 1.09000 * 110.48475 * 274.93257 * 19 9 8 39 39 H 1.09000 * 110.03872 * 95.67309 * 20 19 9 40 40 H 1.09002 * 110.02908 * 217.10544 * 20 19 9 41 41 H 1.09000 * 110.03339 * 119.28470 * 21 20 19 42 42 H 1.08994 * 110.03692 * 240.71757 * 21 20 19 43 43 H 1.09003 * 110.48743 * 142.28661 * 22 21 20 44 44 H 1.08997 * 110.48824 * 264.92667 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0569 2.4765 6 8 1.0110 1.0868 2.3634 7 7 1.9846 -0.3921 3.7000 8 6 1.5976 0.3647 4.8933 9 6 2.2047 -0.2935 6.1338 10 7 1.7655 -1.6861 6.2521 11 6 0.4306 -1.9775 6.3441 12 1 -0.2934 -1.1786 6.4079 13 6 0.0081 -3.2998 6.3552 14 7 -1.2750 -3.5798 6.4430 15 14 1.2603 -4.6814 6.2440 16 1 1.6933 -5.0682 7.6109 17 1 0.6461 -5.8530 5.5693 18 1 2.4370 -4.2214 5.4636 19 6 3.7508 -0.2065 6.1003 20 6 4.1682 -0.3174 7.5812 21 6 2.9565 0.1356 8.4146 22 6 1.8449 0.5054 7.4109 23 6 2.0401 -0.7211 -1.2493 24 9 1.5737 -2.0402 -1.2494 25 9 1.5736 -0.0616 -2.3916 26 9 3.4390 -0.7207 -1.2497 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1264 -0.7996 1.2054 31 1 1.6055 -1.7199 1.2950 32 1 2.4885 -1.2160 3.7906 33 1 0.5112 0.3733 4.9814 34 1 1.9634 1.3880 4.8090 35 1 2.4202 -2.4016 6.2653 36 1 -1.5703 -4.5038 6.4504 37 1 4.0702 0.7491 5.6845 38 1 4.1670 -1.0326 5.5238 39 1 4.4216 -1.3500 7.8215 40 1 5.0208 0.3323 7.7785 41 1 2.6217 -0.6772 9.0592 42 1 3.2211 1.0050 9.0162 43 1 0.8703 0.1990 7.7910 44 1 1.8562 1.5759 7.2064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:18 Heat of formation + Delta-G solvation = -201.140439 kcal Electronic energy + Delta-G solvation = -28730.894474 eV Core-core repulsion = 24267.513947 eV Total energy + Delta-G solvation = -4463.380527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.22418 -47.71537 -47.67393 -39.76614 -38.42947 -35.18288 -34.14257 -33.34882 -31.00182 -29.18715 -28.38992 -27.57419 -26.34826 -24.25447 -23.16477 -21.62435 -20.34883 -19.72863 -18.89505 -18.57719 -18.37928 -17.66496 -17.61596 -16.40274 -15.92726 -15.49374 -15.19549 -14.64459 -14.63285 -14.55984 -14.32739 -14.12931 -14.07979 -13.85973 -13.81951 -13.49978 -13.30784 -13.07002 -13.00358 -12.60988 -12.38640 -12.05879 -11.77461 -11.48312 -11.38247 -11.32406 -11.27033 -11.00627 -10.86196 -10.77664 -10.62374 -10.36380 -10.09143 -9.97847 -9.61321 -9.58470 -8.99155 -8.57219 -7.38763 -5.84369 -3.21737 2.59968 2.87766 3.26602 3.30917 3.37949 3.39555 3.75133 3.95507 4.00280 4.49992 4.58087 4.74716 4.94140 4.96694 4.99196 5.05176 5.21761 5.29769 5.39408 5.48111 5.50649 5.67416 5.72356 5.77241 5.85331 5.87990 5.99056 6.08654 6.12146 6.21432 6.25044 6.31830 6.42686 6.52599 6.61537 6.69394 6.86158 6.95885 7.85966 7.91685 8.34148 8.51228 9.11185 9.83055 10.01820 11.33537 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.012879 B = 0.003866 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.510939 B = 7241.605954 C = 8239.430195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 H 0.121 0.879 4 C -0.146 4.146 5 C 0.517 3.483 6 O -0.550 6.550 7 N -0.700 5.700 8 C 0.122 3.878 9 C 0.193 3.807 10 N -0.733 5.733 11 C -0.239 4.239 12 H 0.091 0.909 13 C 0.009 3.991 14 N -0.930 5.930 15 Si 0.880 3.120 16 H -0.286 1.286 17 H -0.292 1.292 18 H -0.278 1.278 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.129 4.129 23 C 0.452 3.548 24 F -0.181 7.181 25 F -0.183 7.183 26 F -0.186 7.186 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.401 0.599 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.362 0.638 36 H 0.259 0.741 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.780 7.222 -9.504 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.134 4.134 3 H 0.139 0.861 4 C -0.187 4.187 5 C 0.302 3.698 6 O -0.429 6.429 7 N -0.349 5.349 8 C -0.004 4.004 9 C 0.101 3.899 10 N -0.376 5.376 11 C -0.369 4.369 12 H 0.109 0.891 13 C -0.187 4.187 14 N -0.577 5.577 15 Si 0.711 3.289 16 H -0.212 1.212 17 H -0.219 1.219 18 H -0.204 1.204 19 C -0.164 4.164 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.170 4.170 23 C 0.398 3.602 24 F -0.163 7.163 25 F -0.165 7.165 26 F -0.168 7.168 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.236 0.764 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.082 7.920 -9.577 16.003 hybrid contribution 1.136 -1.832 -0.183 2.164 sum 11.218 6.088 -9.760 16.067 Atomic orbital electron populations 1.22015 0.90786 1.03662 1.05177 1.22140 1.00483 1.01397 0.89359 0.86116 1.21713 1.03556 1.01211 0.92176 1.20034 0.79700 0.85547 0.84482 1.90650 1.40527 1.25007 1.86705 1.45729 1.56393 1.27438 1.05356 1.21768 1.01069 0.93466 0.84064 1.20691 0.91102 0.86231 0.91845 1.42666 1.05154 1.00606 1.89133 1.18918 0.82179 0.93056 1.42762 0.89098 1.24647 0.95352 0.96736 1.01947 1.69695 1.12734 1.18339 1.56933 0.86645 0.81217 0.83290 0.77786 1.21226 1.21901 1.20408 1.22609 0.95855 1.01297 0.96644 1.22054 0.97698 1.00793 0.95093 1.21963 0.95029 1.00183 0.97895 1.22722 0.99827 0.98219 0.96183 1.20725 0.75262 0.77846 0.86374 1.93184 1.88404 1.37881 1.96817 1.93168 1.88481 1.80783 1.54055 1.93168 1.30309 1.96452 1.96829 0.88036 0.91654 0.91659 0.88030 0.87446 0.76422 0.91005 0.92346 0.80513 0.93042 0.91305 0.92024 0.92274 0.92699 0.91783 0.92998 0.90278 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.69 37.16 0.32 -1.57 16 2 C -0.11 -1.27 2.01 -90.62 -0.18 -1.46 16 3 H 0.12 1.30 7.96 -51.93 -0.41 0.89 16 4 C -0.15 -1.69 4.93 -27.89 -0.14 -1.83 16 5 C 0.52 7.72 7.55 -10.99 -0.08 7.64 16 6 O -0.55 -9.64 13.96 5.55 0.08 -9.56 16 7 N -0.70 -10.74 5.26 -60.29 -0.32 -11.05 16 8 C 0.12 2.03 4.44 -4.04 -0.02 2.02 16 9 C 0.19 3.17 0.48 -129.84 -0.06 3.10 16 10 N -0.73 -14.77 4.56 -45.40 -0.21 -14.98 16 11 C -0.24 -6.01 9.11 -15.06 -0.14 -6.15 16 12 H 0.09 2.52 7.40 -52.49 -0.39 2.14 16 13 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 14 N -0.93 -27.78 13.97 55.49 0.78 -27.00 16 15 Si 0.88 20.57 27.69 -169.99 -4.71 15.86 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.28 -5.91 6.59 56.52 0.37 -5.54 16 19 C -0.13 -1.69 5.50 -25.07 -0.14 -1.83 16 20 C -0.12 -1.55 6.78 -25.61 -0.17 -1.72 16 21 C -0.11 -1.62 6.78 -25.61 -0.17 -1.79 16 22 C -0.13 -2.06 5.86 -25.08 -0.15 -2.21 16 23 C 0.45 5.04 2.69 37.16 0.10 5.14 16 24 F -0.18 -2.18 16.37 2.25 0.04 -2.14 16 25 F -0.18 -2.11 16.80 2.25 0.04 -2.07 16 26 F -0.19 -2.08 16.71 2.25 0.04 -2.05 16 27 H 0.10 1.43 5.95 -51.93 -0.31 1.12 16 28 H 0.06 0.69 7.80 -51.93 -0.41 0.28 16 29 H 0.06 0.77 7.80 -51.93 -0.41 0.36 16 30 H 0.10 0.97 7.66 -51.93 -0.40 0.57 16 31 H 0.11 1.23 7.94 -51.93 -0.41 0.81 16 32 H 0.40 5.83 8.11 -40.82 -0.33 5.50 16 33 H 0.07 1.43 7.50 -51.93 -0.39 1.04 16 34 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 35 H 0.36 7.27 5.62 -40.82 -0.23 7.04 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 0.83 8.03 -51.93 -0.42 0.42 16 38 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.48 7.27 -51.93 -0.38 1.10 16 44 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -29.31 360.63 -6.35 -35.66 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -6.59 Total: 12.41 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.93 Total: -0.51 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.25 Total: -53.03 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.11 Total: -6.26 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.71 Total: 15.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.31 -6.35 -35.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.481 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds