Wall clock time and date at job start Tue Mar 31 2020 13:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47126 * 240.00460 * 2 1 3 5 5 C 1.50695 * 109.47296 * 64.99470 * 4 2 1 6 6 O 1.21283 * 120.00312 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00091 * 179.97438 * 5 4 2 8 8 C 1.46505 * 119.99976 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47060 * 175.58941 * 8 7 5 10 10 N 1.46507 * 110.05470 * 56.33547 * 9 8 7 11 11 C 1.36935 * 119.99881 * 57.74193 * 10 9 8 12 12 H 1.08004 * 120.00263 * 6.23437 * 11 10 9 13 13 C 1.38816 * 119.99689 * 186.23550 * 11 10 9 14 14 N 1.31615 * 120.00399 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99576 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47406 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47357 * 119.99972 * 15 13 11 18 18 H 1.48504 * 109.46740 * 239.99665 * 15 13 11 19 19 C 1.53870 * 110.03462 * 294.91754 * 9 8 7 20 20 C 1.54259 * 106.60019 * 240.71395 * 19 9 8 21 21 C 1.54895 * 104.19556 * 336.38965 * 20 19 9 22 22 C 1.54262 * 110.03365 * 177.74532 * 9 8 7 23 23 C 1.52993 * 109.47530 * 120.00162 * 2 1 3 24 24 F 1.39904 * 109.47731 * 179.97438 * 23 2 1 25 25 F 1.39896 * 109.47308 * 300.00292 * 23 2 1 26 26 F 1.39906 * 109.46873 * 60.00000 * 23 2 1 27 27 H 1.09000 * 109.47482 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46964 * 299.99640 * 1 2 3 29 29 H 1.09001 * 109.47369 * 59.99597 * 1 2 3 30 30 H 1.09007 * 109.46780 * 304.99831 * 4 2 1 31 31 H 1.09002 * 109.47279 * 185.00376 * 4 2 1 32 32 H 0.96994 * 120.00407 * 0.02562 * 7 5 4 33 33 H 1.09003 * 109.46768 * 55.59771 * 8 7 5 34 34 H 1.08994 * 109.47227 * 295.59319 * 8 7 5 35 35 H 0.97000 * 120.00045 * 237.74810 * 10 9 8 36 36 H 0.96998 * 120.00594 * 180.02562 * 14 13 11 37 37 H 1.09000 * 110.03547 * 0.02562 * 19 9 8 38 38 H 1.09008 * 110.02937 * 121.42655 * 19 9 8 39 39 H 1.08999 * 110.49008 * 95.07095 * 20 19 9 40 40 H 1.09010 * 110.48965 * 217.71376 * 20 19 9 41 41 H 1.08998 * 110.75582 * 279.62843 * 21 20 19 42 42 H 1.08999 * 110.75519 * 156.26127 * 21 20 19 43 43 H 1.08992 * 110.49346 * 261.57768 * 22 9 8 44 44 H 1.09006 * 110.48646 * 24.22414 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0115 1.0874 -2.3633 7 7 1.9852 -0.3912 -3.7001 8 6 1.5980 0.3657 -4.8932 9 6 2.2013 -0.2949 -6.1344 10 7 1.7832 -1.6970 -6.2107 11 6 0.4514 -2.0134 -6.2462 12 1 -0.2881 -1.2296 -6.3197 13 6 0.0517 -3.3415 -6.1877 14 7 0.9528 -4.2966 -6.0987 15 14 -1.7651 -3.7730 -6.2369 16 1 -2.5672 -2.5275 -6.3386 17 1 -2.0374 -4.6353 -7.4148 18 1 -2.1350 -4.4995 -4.9956 19 6 3.7366 -0.2046 -6.0860 20 6 4.1700 0.6013 -7.3279 21 6 2.9994 0.4201 -8.3259 22 6 1.7553 0.4592 -7.4041 23 6 2.0400 -0.7212 1.2491 24 9 3.4390 -0.7218 1.2489 25 9 1.5737 -0.0619 2.3915 26 9 1.5737 -2.0403 1.2491 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6053 -1.7198 -1.2953 31 1 3.1263 -0.7995 -1.2057 32 1 2.4891 -1.2150 -3.7909 33 1 1.9668 1.3881 -4.8104 34 1 0.5115 0.3771 -4.9795 35 1 2.4498 -2.4012 -6.2359 36 1 0.6736 -5.2247 -6.0582 37 1 4.0520 0.3095 -5.1781 38 1 4.1706 -1.2040 -6.1192 39 1 4.2960 1.6540 -7.0747 40 1 5.0922 0.1950 -7.7437 41 1 3.0720 -0.5403 -8.8362 42 1 2.9739 1.2394 -9.0443 43 1 0.9151 -0.0507 -7.8754 44 1 1.4912 1.4890 -7.1632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668170.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:22 Heat of formation + Delta-G solvation = -203.811946 kcal Electronic energy + Delta-G solvation = -28708.692250 eV Core-core repulsion = 24245.195878 eV Total energy + Delta-G solvation = -4463.496372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.18500 -47.67837 -47.63182 -39.71196 -38.32924 -35.12344 -34.08366 -33.35803 -30.77172 -28.82691 -28.28290 -27.23816 -26.30234 -24.38211 -23.20950 -21.57803 -20.46296 -19.75924 -18.80120 -18.52319 -18.32798 -17.56943 -17.03752 -16.34609 -15.86905 -15.43449 -15.21404 -14.70497 -14.57983 -14.53161 -14.13131 -14.08903 -13.89518 -13.80640 -13.74916 -13.38113 -13.36225 -13.04732 -12.98948 -12.66665 -12.24316 -11.88606 -11.51330 -11.43685 -11.32632 -11.28653 -11.15757 -10.84000 -10.76391 -10.67680 -10.54338 -10.29419 -10.17722 -9.90675 -9.71547 -9.51875 -8.96235 -8.49384 -7.07325 -5.86784 -3.16293 2.64238 2.94079 3.37104 3.44620 3.45671 3.46434 3.79516 3.99210 4.06593 4.51505 4.63218 4.79339 5.00873 5.07462 5.10259 5.19151 5.30048 5.45479 5.50998 5.53635 5.64074 5.71092 5.74771 5.87748 5.90351 5.90718 6.05459 6.13540 6.21196 6.25523 6.27692 6.39634 6.51834 6.55514 6.72998 6.77031 6.94462 7.04081 7.65859 7.97688 8.31937 8.59277 9.43877 9.97487 10.32919 11.35141 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.004028 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.777349 B = 6949.349004 C = 8441.570543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 H 0.120 0.880 4 C -0.146 4.146 5 C 0.516 3.484 6 O -0.555 6.555 7 N -0.696 5.696 8 C 0.121 3.879 9 C 0.188 3.812 10 N -0.712 5.712 11 C -0.234 4.234 12 H 0.070 0.930 13 C -0.007 4.007 14 N -0.930 5.930 15 Si 0.900 3.100 16 H -0.281 1.281 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.132 4.132 23 C 0.452 3.548 24 F -0.186 7.186 25 F -0.184 7.184 26 F -0.181 7.181 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.406 0.594 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 8.753 8.539 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.134 4.134 3 H 0.138 0.862 4 C -0.186 4.186 5 C 0.301 3.699 6 O -0.435 6.435 7 N -0.345 5.345 8 C -0.005 4.005 9 C 0.096 3.904 10 N -0.353 5.353 11 C -0.365 4.365 12 H 0.088 0.912 13 C -0.204 4.204 14 N -0.578 5.578 15 Si 0.731 3.269 16 H -0.206 1.206 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.163 4.163 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.172 4.172 23 C 0.398 3.602 24 F -0.167 7.167 25 F -0.166 7.166 26 F -0.163 7.163 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.241 0.759 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.365 9.423 8.635 13.861 hybrid contribution -0.498 -1.238 0.167 1.345 sum 4.866 8.184 8.802 12.967 Atomic orbital electron populations 1.22008 0.90950 1.03573 1.05068 1.22132 1.00362 1.01400 0.89471 0.86170 1.21706 1.03628 1.01211 0.92042 1.20047 0.79736 0.85492 0.84595 1.90634 1.40978 1.25098 1.86807 1.45761 1.56097 1.27540 1.05131 1.21877 1.00467 0.93425 0.84771 1.20469 0.91319 0.87038 0.91563 1.42581 1.05207 0.99706 1.87829 1.19129 0.83761 0.91400 1.42234 0.91201 1.24689 0.97151 0.95823 1.02695 1.69650 1.31651 0.99219 1.57303 0.86228 0.85384 0.78067 0.77186 1.20575 1.21929 1.21922 1.22421 0.95741 1.00480 0.97662 1.22306 0.98079 0.99398 0.96084 1.22388 0.94936 1.01046 0.97109 1.22829 0.98424 0.99047 0.96903 1.20720 0.75304 0.77861 0.86319 1.93172 1.30261 1.96452 1.96820 1.93163 1.88492 1.80807 1.54096 1.93185 1.88409 1.37861 1.96810 0.91711 0.91717 0.88119 0.87383 0.87997 0.75856 0.92717 0.91721 0.78113 0.93560 0.92079 0.91307 0.92299 0.92364 0.91409 0.92723 0.90320 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 8.69 37.15 0.32 -1.60 16 2 C -0.11 -1.32 2.01 -90.62 -0.18 -1.50 16 3 H 0.12 1.35 7.95 -51.93 -0.41 0.94 16 4 C -0.15 -1.78 4.93 -27.88 -0.14 -1.92 16 5 C 0.52 8.01 7.55 -10.99 -0.08 7.93 16 6 O -0.56 -9.93 13.97 5.55 0.08 -9.85 16 7 N -0.70 -11.25 5.09 -60.29 -0.31 -11.56 16 8 C 0.12 2.08 3.98 -4.04 -0.02 2.06 16 9 C 0.19 3.23 0.68 -130.70 -0.09 3.14 16 10 N -0.71 -15.22 4.64 -46.19 -0.21 -15.43 16 11 C -0.23 -5.80 8.39 -15.06 -0.13 -5.92 16 12 H 0.07 1.75 7.23 -52.48 -0.38 1.37 16 13 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 14 N -0.93 -25.92 13.07 55.49 0.73 -25.20 16 15 Si 0.90 21.52 29.55 -169.99 -5.02 16.49 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 C -0.12 -1.82 5.92 -25.62 -0.15 -1.97 16 20 C -0.12 -1.57 6.83 -25.07 -0.17 -1.75 16 21 C -0.12 -1.69 6.91 -24.73 -0.17 -1.86 16 22 C -0.13 -2.17 5.95 -25.07 -0.15 -2.32 16 23 C 0.45 5.23 2.69 37.15 0.10 5.33 16 24 F -0.19 -2.17 16.71 2.25 0.04 -2.13 16 25 F -0.18 -2.17 16.80 2.25 0.04 -2.13 16 26 F -0.18 -2.26 16.37 2.25 0.04 -2.23 16 27 H 0.06 0.77 7.80 -51.93 -0.41 0.37 16 28 H 0.06 0.69 7.80 -51.93 -0.41 0.29 16 29 H 0.10 1.43 5.95 -51.93 -0.31 1.12 16 30 H 0.11 1.33 7.94 -51.93 -0.41 0.92 16 31 H 0.10 1.06 7.66 -51.93 -0.40 0.66 16 32 H 0.41 6.50 8.00 -40.82 -0.33 6.17 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.28 7.46 -51.93 -0.39 0.90 16 35 H 0.38 8.88 7.28 -40.82 -0.30 8.58 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.06 0.82 7.54 -51.93 -0.39 0.43 16 38 H 0.07 1.04 7.44 -51.92 -0.39 0.66 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.49 7.16 -51.93 -0.37 1.12 16 44 H 0.05 0.79 7.86 -51.93 -0.41 0.38 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -27.69 361.66 -6.67 -34.36 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -6.54 Total: 12.89 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.95 Total: -0.66 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.20 Total: -52.19 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.11 Total: -6.49 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.69 -6.67 -34.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668170.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.453 kcal (2) G-P(sol) polarization free energy of solvation -27.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds