Wall clock time and date at job start Tue Mar 31 2020 14:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99841 * 2 1 4 4 H 1.48508 * 109.46876 * 239.99508 * 3 2 1 5 5 H 1.48497 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47223 * 119.99971 * 3 2 1 7 7 C 1.37883 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46706 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97082 * 125.00181 * 10 9 7 12 12 C 1.35243 * 107.85356 * 179.76577 * 11 10 9 13 13 C 1.40396 * 107.86896 * 0.22585 * 12 11 10 14 14 N 1.40201 * 125.97176 * 179.97438 * 13 12 11 15 15 C 1.34768 * 120.00142 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00202 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00292 * 180.02562 * 15 14 13 18 18 C 1.46494 * 120.00332 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.47407 * 324.99980 * 18 17 15 20 20 C 1.53004 * 109.47135 * 84.99963 * 18 17 15 21 21 O 1.42896 * 109.47290 * 64.99905 * 20 18 17 22 22 C 1.52999 * 109.47238 * 204.99618 * 18 17 15 23 23 C 1.53000 * 109.46877 * 65.00340 * 22 18 17 24 24 C 1.53783 * 113.61433 * 272.49684 * 23 22 18 25 25 C 1.53777 * 87.08310 * 220.02106 * 24 23 22 26 26 C 1.53780 * 87.08323 * 25.43000 * 25 24 23 27 27 N 1.31202 * 108.05652 * 359.97438 * 13 12 11 28 28 H 0.96995 * 120.00331 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46925 * 59.99386 * 9 7 2 30 30 H 1.08997 * 109.46741 * 299.99881 * 9 7 2 31 31 H 1.08002 * 126.07726 * 0.03413 * 11 10 9 32 32 H 1.08003 * 126.06335 * 180.26555 * 12 11 10 33 33 H 0.96998 * 119.99801 * 180.02562 * 14 13 12 34 34 H 0.96998 * 119.99652 * 0.02562 * 17 15 14 35 35 H 1.09005 * 109.47262 * 185.00308 * 20 18 17 36 36 H 1.09006 * 109.47026 * 304.99702 * 20 18 17 37 37 H 0.96697 * 113.99933 * 180.02562 * 21 20 18 38 38 H 1.09002 * 109.46848 * 184.99975 * 22 18 17 39 39 H 1.08995 * 109.47681 * 305.00127 * 22 18 17 40 40 H 1.09003 * 112.84978 * 43.80124 * 23 22 18 41 41 H 1.09007 * 113.60996 * 334.56726 * 24 23 22 42 42 H 1.08993 * 113.61650 * 105.46878 * 24 23 22 43 43 H 1.09002 * 113.61069 * 270.88186 * 25 24 23 44 44 H 1.09001 * 113.61961 * 139.97761 * 25 24 23 45 45 H 1.09000 * 113.62064 * 220.02527 * 26 25 24 46 46 H 1.08996 * 113.69370 * 89.12852 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.2422 -4.6223 0.8952 12 6 3.2576 -5.4453 0.5477 13 6 3.8669 -4.9163 -0.6012 14 7 4.9610 -5.4690 -1.2818 15 6 5.5223 -6.6116 -0.8397 16 8 5.0796 -7.1636 0.1492 17 7 6.5744 -7.1427 -1.4936 18 6 7.1842 -8.3851 -1.0134 19 1 7.1470 -8.4108 0.0756 20 6 6.4162 -9.5818 -1.5783 21 8 6.5622 -9.6137 -2.9995 22 6 8.6412 -8.4500 -1.4757 23 6 9.4376 -7.3251 -0.8113 24 6 9.4033 -6.0013 -1.5931 25 6 10.8904 -5.8423 -1.2352 26 6 10.9443 -7.3745 -1.1151 27 7 3.2336 -3.8143 -0.9266 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 1.5776 -4.7526 1.7366 32 1 3.5478 -6.3494 1.0624 33 1 5.3144 -5.0285 -2.0704 34 1 6.9277 -6.7022 -2.2823 35 1 6.8134 -10.5028 -1.1515 36 1 5.3604 -9.4891 -1.3235 37 1 6.0999 -10.3481 -3.4259 38 1 9.0688 -9.4126 -1.1952 39 1 8.6844 -8.3351 -2.5587 40 1 9.2092 -7.2138 0.2487 41 1 9.2224 -6.1291 -2.6604 42 1 8.7623 -5.2441 -1.1418 43 1 11.0593 -5.3242 -0.2912 44 1 11.4960 -5.4468 -2.0506 45 1 11.5472 -7.7260 -0.2777 46 1 11.1848 -7.8790 -2.0508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281373708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:02 Heat of formation + Delta-G solvation = 16.586884 kcal Electronic energy + Delta-G solvation = -27027.851461 eV Core-core repulsion = 23148.061791 eV Total energy + Delta-G solvation = -3879.789670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74556 -39.93925 -38.95259 -37.32204 -34.97845 -34.49320 -33.32414 -31.52468 -30.41053 -29.22829 -27.77408 -26.55614 -25.85682 -23.72277 -23.11917 -22.06414 -20.87071 -20.39702 -19.74804 -19.51591 -18.05462 -17.51628 -16.81817 -16.54428 -16.17407 -15.60781 -15.47910 -15.09535 -14.86077 -14.61160 -14.17679 -14.13260 -13.77782 -13.60757 -13.43930 -12.75538 -12.71936 -12.70291 -12.30251 -12.17714 -12.10183 -11.74171 -11.54160 -11.41079 -11.04521 -10.84224 -10.79657 -10.51826 -10.44350 -10.37099 -10.22869 -10.15854 -10.00291 -9.62825 -9.46986 -9.11015 -8.60417 -8.05281 -7.36449 -6.21740 -4.26729 2.46220 2.72040 3.16552 3.27235 3.30311 3.34971 3.66432 3.88359 4.06303 4.18711 4.31664 4.37603 4.42398 4.43700 4.61616 4.81639 4.88266 5.09930 5.13230 5.19977 5.32230 5.45024 5.46446 5.48681 5.49832 5.59659 5.64118 5.67139 5.79818 5.85594 5.88711 6.04221 6.26246 6.29971 6.41726 6.58682 6.66985 6.91612 7.06066 7.17189 7.34749 7.55493 7.72474 7.87122 8.04565 8.11047 8.67233 8.71029 8.83985 9.38676 10.86906 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.002657 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.448542 B =10536.149702 C =11867.215230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.277 3.723 14 N -0.644 5.644 15 C 0.714 3.286 16 O -0.573 6.573 17 N -0.729 5.729 18 C 0.172 3.828 19 H 0.101 0.899 20 C 0.060 3.940 21 O -0.570 6.570 22 C -0.112 4.112 23 C -0.110 4.110 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.138 4.138 27 N -0.308 5.308 28 H 0.267 0.733 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.406 0.594 34 H 0.398 0.602 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.377 0.623 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.097 -19.295 -3.842 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.142 3.858 10 N -0.103 5.103 11 C -0.100 4.100 12 C -0.318 4.318 13 C 0.023 3.977 14 N -0.293 5.293 15 C 0.413 3.587 16 O -0.449 6.449 17 N -0.385 5.385 18 C 0.066 3.934 19 H 0.119 0.881 20 C -0.020 4.020 21 O -0.375 6.375 22 C -0.149 4.149 23 C -0.128 4.128 24 C -0.175 4.175 25 C -0.181 4.181 26 C -0.175 4.175 27 N -0.139 5.139 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.240 0.760 34 H 0.232 0.768 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.224 0.776 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.734 -18.080 -3.622 25.583 hybrid contribution 0.328 0.248 -0.276 0.495 sum 18.061 -17.832 -3.898 25.679 Atomic orbital electron populations 1.69906 1.06038 1.27699 1.49798 1.24943 0.94977 0.99518 0.94638 0.86390 0.79381 0.81819 0.78920 1.19945 1.21063 1.20048 1.21231 0.93971 0.89428 1.52023 0.91361 1.19715 0.85617 0.81311 0.99192 1.49044 1.23217 1.19795 1.18266 1.22549 1.00387 0.90314 0.96771 1.21501 1.02141 1.06315 1.01793 1.18793 0.90729 0.93930 0.94293 1.41394 1.31632 1.24907 1.31412 1.15664 0.80139 0.80043 0.82862 1.90849 1.64361 1.62714 1.27015 1.44998 1.33638 1.27177 1.32639 1.20933 0.91482 0.81607 0.99374 0.88086 1.22730 1.00218 0.97691 0.81318 1.86444 1.76970 1.54308 1.19753 1.21778 0.92620 0.99037 1.01510 1.22577 0.94983 0.95178 1.00107 1.22995 0.96748 0.97647 1.00159 1.22800 0.97125 0.96457 1.01745 1.22943 0.96257 0.96586 1.01716 1.77324 1.03843 1.16289 1.16486 0.92296 0.93799 0.92586 0.81607 0.82224 0.75958 0.76773 0.92983 0.92708 0.77649 0.90407 0.90309 0.89187 0.90182 0.91377 0.90322 0.91652 0.91746 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 13.29 55.43 0.74 -24.82 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.85 9.23 -34.44 -0.32 -15.17 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.26 6.68 6.26 -5.19 -0.03 6.64 16 10 N -0.32 -7.61 3.67 -62.56 -0.23 -7.84 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.29 -5.81 9.61 -39.84 -0.38 -6.19 16 13 C 0.28 5.68 8.11 -154.36 -1.25 4.43 16 14 N -0.64 -10.28 5.45 -15.51 -0.08 -10.37 16 15 C 0.71 10.56 8.50 -86.92 -0.74 9.82 16 16 O -0.57 -10.18 13.13 5.28 0.07 -10.11 16 17 N -0.73 -7.61 4.36 -58.68 -0.26 -7.87 16 18 C 0.17 1.54 2.36 -67.93 -0.16 1.38 16 19 H 0.10 1.03 7.57 -51.93 -0.39 0.63 16 20 C 0.06 0.50 6.85 37.16 0.25 0.76 16 21 O -0.57 -4.54 12.83 -35.23 -0.45 -5.00 16 22 C -0.11 -0.78 4.34 -26.73 -0.12 -0.89 16 23 C -0.11 -0.81 3.52 -89.80 -0.32 -1.13 16 24 C -0.14 -1.07 6.31 -25.92 -0.16 -1.23 16 25 C -0.14 -1.05 8.08 -25.92 -0.21 -1.26 16 26 C -0.14 -0.91 7.64 -25.92 -0.20 -1.11 16 27 N -0.31 -7.23 12.42 31.44 0.39 -6.84 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 31 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 32 H 0.16 3.17 5.91 -52.48 -0.31 2.86 16 33 H 0.41 5.40 8.84 -40.82 -0.36 5.03 16 34 H 0.40 3.50 7.78 -40.82 -0.32 3.19 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.38 1.63 9.12 45.56 0.42 2.05 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.58 7.43 -51.93 -0.39 0.20 16 40 H 0.09 0.76 8.13 -51.93 -0.42 0.33 16 41 H 0.08 0.56 7.90 -51.92 -0.41 0.15 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -33.44 381.86 -9.39 -42.84 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.37 Total: 9.25 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -3.93 Total: -1.52 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.56 Total: -57.72 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.38 Total: -15.11 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.44 -9.39 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281373708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.424 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds