Wall clock time and date at job start Tue Mar 31 2020 14:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99841 * 2 1 4 4 H 1.48508 * 109.46876 * 239.99508 * 3 2 1 5 5 H 1.48497 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47223 * 119.99971 * 3 2 1 7 7 C 1.37883 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46706 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97082 * 125.00181 * 10 9 7 12 12 C 1.35243 * 107.85356 * 179.76577 * 11 10 9 13 13 C 1.40396 * 107.86896 * 0.22585 * 12 11 10 14 14 N 1.40201 * 125.97176 * 179.97438 * 13 12 11 15 15 C 1.34768 * 120.00142 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00202 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00292 * 180.02562 * 15 14 13 18 18 C 1.46494 * 120.00332 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.47407 * 324.99980 * 18 17 15 20 20 C 1.53004 * 109.47135 * 84.99963 * 18 17 15 21 21 O 1.42896 * 109.47290 * 64.99905 * 20 18 17 22 22 C 1.52999 * 109.47238 * 204.99618 * 18 17 15 23 23 C 1.53000 * 109.46877 * 65.00340 * 22 18 17 24 24 C 1.53783 * 113.61433 * 272.49684 * 23 22 18 25 25 C 1.53777 * 87.08310 * 220.02106 * 24 23 22 26 26 C 1.53780 * 87.08323 * 25.43000 * 25 24 23 27 27 N 1.31202 * 108.05652 * 359.97438 * 13 12 11 28 28 H 0.96995 * 120.00331 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46925 * 59.99386 * 9 7 2 30 30 H 1.08997 * 109.46741 * 299.99881 * 9 7 2 31 31 H 1.08002 * 126.07726 * 0.03413 * 11 10 9 32 32 H 1.08003 * 126.06335 * 180.26555 * 12 11 10 33 33 H 0.96998 * 119.99801 * 180.02562 * 14 13 12 34 34 H 0.96998 * 119.99652 * 0.02562 * 17 15 14 35 35 H 1.09005 * 109.47262 * 185.00308 * 20 18 17 36 36 H 1.09006 * 109.47026 * 304.99702 * 20 18 17 37 37 H 0.96697 * 113.99933 * 180.02562 * 21 20 18 38 38 H 1.09002 * 109.46848 * 184.99975 * 22 18 17 39 39 H 1.08995 * 109.47681 * 305.00127 * 22 18 17 40 40 H 1.09003 * 112.84978 * 43.80124 * 23 22 18 41 41 H 1.09007 * 113.60996 * 334.56726 * 24 23 22 42 42 H 1.08993 * 113.61650 * 105.46878 * 24 23 22 43 43 H 1.09002 * 113.61069 * 270.88186 * 25 24 23 44 44 H 1.09001 * 113.61961 * 139.97761 * 25 24 23 45 45 H 1.09000 * 113.62064 * 220.02527 * 26 25 24 46 46 H 1.08996 * 113.69370 * 89.12852 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.2422 -4.6223 0.8952 12 6 3.2576 -5.4453 0.5477 13 6 3.8669 -4.9163 -0.6012 14 7 4.9610 -5.4690 -1.2818 15 6 5.5223 -6.6116 -0.8397 16 8 5.0796 -7.1636 0.1492 17 7 6.5744 -7.1427 -1.4936 18 6 7.1842 -8.3851 -1.0134 19 1 7.1470 -8.4108 0.0756 20 6 6.4162 -9.5818 -1.5783 21 8 6.5622 -9.6137 -2.9995 22 6 8.6412 -8.4500 -1.4757 23 6 9.4376 -7.3251 -0.8113 24 6 9.4033 -6.0013 -1.5931 25 6 10.8904 -5.8423 -1.2352 26 6 10.9443 -7.3745 -1.1151 27 7 3.2336 -3.8143 -0.9266 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 1.5776 -4.7526 1.7366 32 1 3.5478 -6.3494 1.0624 33 1 5.3144 -5.0285 -2.0704 34 1 6.9277 -6.7022 -2.2823 35 1 6.8134 -10.5028 -1.1515 36 1 5.3604 -9.4891 -1.3235 37 1 6.0999 -10.3481 -3.4259 38 1 9.0688 -9.4126 -1.1952 39 1 8.6844 -8.3351 -2.5587 40 1 9.2092 -7.2138 0.2487 41 1 9.2224 -6.1291 -2.6604 42 1 8.7623 -5.2441 -1.1418 43 1 11.0593 -5.3242 -0.2912 44 1 11.4960 -5.4468 -2.0506 45 1 11.5472 -7.7260 -0.2777 46 1 11.1848 -7.8790 -2.0508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281373708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:01 Heat of formation + Delta-G solvation = -6.639780 kcal Electronic energy + Delta-G solvation = -27028.858645 eV Core-core repulsion = 23148.061791 eV Total energy + Delta-G solvation = -3880.796854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.21733 -41.11446 -39.78207 -38.04015 -36.22780 -35.61941 -35.24258 -32.97269 -31.67960 -30.88248 -28.62534 -28.28064 -26.43973 -25.15503 -24.22823 -23.31100 -22.09297 -21.58248 -21.19417 -20.18737 -19.17978 -18.68228 -18.29509 -18.14758 -17.33881 -16.77674 -16.59119 -16.28554 -15.94772 -15.84443 -15.57389 -15.34900 -14.95996 -14.53530 -14.30521 -14.20100 -14.04717 -13.78633 -13.68314 -13.38594 -13.25029 -12.94855 -12.75210 -12.71691 -12.27871 -12.15123 -12.08094 -12.04652 -11.60532 -11.39485 -11.37919 -11.15289 -11.09911 -10.95930 -10.76689 -10.71517 -10.07782 -9.70264 -9.03042 -8.32134 -6.46498 1.09602 1.18043 1.38365 1.40476 1.49336 1.73464 2.14514 2.36754 2.44554 2.99206 3.17606 3.46092 3.59833 3.79671 3.83870 3.98837 4.03748 4.19468 4.21722 4.29217 4.46363 4.58932 4.65640 4.77331 4.84797 4.86426 4.89919 4.91605 4.95170 4.97012 4.98730 5.03974 5.10867 5.17159 5.20167 5.28509 5.45153 5.56878 5.61295 5.70602 5.78268 5.91693 6.00002 6.30857 6.64583 6.79423 6.90915 7.17371 7.23342 7.47914 8.75109 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.002657 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.448542 B =10536.149702 C =11867.215230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.346 5.346 11 C 0.055 3.945 12 C -0.291 4.291 13 C 0.285 3.715 14 N -0.639 5.639 15 C 0.712 3.288 16 O -0.602 6.602 17 N -0.708 5.708 18 C 0.166 3.834 19 H 0.089 0.911 20 C 0.065 3.935 21 O -0.579 6.579 22 C -0.098 4.098 23 C -0.111 4.111 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.129 4.129 27 N -0.349 5.349 28 H 0.273 0.727 29 H 0.021 0.979 30 H 0.058 0.942 31 H 0.201 0.799 32 H 0.167 0.833 33 H 0.418 0.582 34 H 0.408 0.592 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.394 0.606 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.866 -20.216 -4.220 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.155 3.845 10 N -0.128 5.128 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.030 3.970 14 N -0.290 5.290 15 C 0.412 3.588 16 O -0.481 6.481 17 N -0.363 5.363 18 C 0.061 3.939 19 H 0.107 0.893 20 C -0.014 4.014 21 O -0.386 6.386 22 C -0.136 4.136 23 C -0.129 4.129 24 C -0.179 4.179 25 C -0.185 4.185 26 C -0.166 4.166 27 N -0.180 5.180 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.217 0.783 32 H 0.185 0.815 33 H 0.255 0.745 34 H 0.245 0.755 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.243 0.757 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.544 -19.045 -4.038 27.586 hybrid contribution -0.154 0.394 -0.181 0.460 sum 19.390 -18.651 -4.219 27.233 Atomic orbital electron populations 1.69985 1.07214 1.28834 1.49924 1.25741 0.95847 1.02713 0.93884 0.85410 0.78300 0.77864 0.78919 1.19843 1.19744 1.19473 1.21382 0.93381 0.91017 1.52870 0.92974 1.19317 0.85667 0.81518 0.98042 1.48813 1.23847 1.20407 1.19721 1.23156 1.00526 0.88913 0.96724 1.21676 1.02199 1.06508 1.01885 1.19097 0.90898 0.92897 0.94145 1.41426 1.30648 1.25305 1.31614 1.15815 0.80715 0.79525 0.82759 1.90819 1.65445 1.63363 1.28433 1.44943 1.31898 1.27304 1.32199 1.21145 0.92863 0.80981 0.98925 0.89279 1.22597 0.98628 0.98273 0.81868 1.86396 1.77308 1.55570 1.19364 1.21698 0.90797 0.99678 1.01421 1.22541 0.95883 0.95126 0.99356 1.23036 0.96789 0.97415 1.00656 1.22821 0.96846 0.97230 1.01630 1.22911 0.95414 0.95903 1.02395 1.77244 1.04973 1.18097 1.17711 0.91824 0.96143 0.92376 0.78258 0.81539 0.74542 0.75534 0.90528 0.95225 0.75719 0.88675 0.90005 0.90451 0.89178 0.93202 0.91000 0.91124 0.91326 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.72 13.29 21.45 0.28 -52.43 16 2 C 0.02 1.03 5.46 84.66 0.46 1.50 16 3 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.55 -31.40 9.23 25.60 0.24 -31.16 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.44 6.26 85.63 0.54 14.98 16 10 N -0.35 -16.64 3.67 -351.84 -1.29 -17.94 16 11 C 0.06 2.24 11.44 83.52 0.96 3.20 16 12 C -0.29 -11.77 9.61 22.10 0.21 -11.55 16 13 C 0.29 11.77 8.11 133.31 1.08 12.85 16 14 N -0.64 -20.23 5.45 -321.24 -1.75 -21.98 16 15 C 0.71 20.71 8.50 179.06 1.52 22.24 16 16 O -0.60 -21.23 13.13 -4.02 -0.05 -21.28 16 17 N -0.71 -14.02 4.36 -457.82 -2.00 -16.01 16 18 C 0.17 2.73 2.36 44.99 0.11 2.83 16 19 H 0.09 1.73 7.57 -2.39 -0.02 1.72 16 20 C 0.07 0.98 6.85 71.98 0.49 1.48 16 21 O -0.58 -7.86 12.83 -148.98 -1.91 -9.77 16 22 C -0.10 -1.13 4.34 30.59 0.13 -1.00 16 23 C -0.11 -1.45 3.52 -10.27 -0.04 -1.49 16 24 C -0.14 -2.02 6.31 31.12 0.20 -1.83 16 25 C -0.15 -1.98 8.08 31.12 0.25 -1.72 16 26 C -0.13 -1.43 7.64 31.12 0.24 -1.20 16 27 N -0.35 -16.66 12.42 -54.44 -0.68 -17.34 16 28 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 29 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 2.99 8.07 -2.39 -0.02 2.98 16 31 H 0.20 6.41 8.06 -2.91 -0.02 6.38 16 32 H 0.17 6.54 5.91 -2.91 -0.02 6.52 16 33 H 0.42 10.94 8.84 -92.71 -0.82 10.12 16 34 H 0.41 6.57 7.78 -92.71 -0.72 5.85 16 35 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.39 2.48 9.12 -74.06 -0.68 1.81 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.96 7.43 -2.39 -0.02 0.94 16 40 H 0.08 1.24 8.13 -2.39 -0.02 1.22 16 41 H 0.09 1.10 7.90 -2.38 -0.02 1.08 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.09 0.84 8.10 -2.39 -0.02 0.82 16 Total: -1.00 -72.12 381.86 -0.18 -72.30 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -1.20 Total: 29.30 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.39 Total: 9.11 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -5.43 Total: -125.70 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.96 Total: -31.05 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -72.12 -0.18 -72.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281373708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.660 kcal (2) G-P(sol) polarization free energy of solvation -72.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds