Wall clock time and date at job start Tue Mar 31 2020 13:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.53001 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46726 * 180.02562 * 5 4 3 7 7 C 1.35904 * 116.99628 * 180.02562 * 6 5 4 8 8 C 1.38758 * 120.05922 * 359.72826 * 7 6 5 9 9 C 1.38121 * 119.94303 * 179.69478 * 8 7 6 10 10 C 1.38284 * 120.05670 * 0.60266 * 9 8 7 11 11 C 1.38245 * 120.11162 * 359.67148 * 10 9 8 12 12 C 1.50705 * 119.97268 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.46925 * 269.97938 * 12 11 10 14 14 C 1.34773 * 119.99946 * 179.97438 * 13 12 11 15 15 O 1.21591 * 119.99800 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00480 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00228 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47021 * 180.02562 * 17 16 14 19 19 H 1.08007 * 120.00437 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00146 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99842 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00080 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47530 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47272 * 120.00337 * 22 20 18 25 25 H 1.48508 * 109.47120 * 239.99822 * 22 20 18 26 26 C 1.38173 * 120.05607 * 0.02881 * 11 10 9 27 27 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 28 28 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 30 30 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 31 31 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 32 32 H 1.09001 * 109.46652 * 60.00333 * 4 3 2 33 33 H 1.08992 * 109.47514 * 300.00423 * 4 3 2 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 36 36 H 1.08003 * 120.02200 * 359.97438 * 8 7 6 37 37 H 1.07998 * 119.96674 * 180.29445 * 9 8 7 38 38 H 1.08003 * 119.94493 * 179.69558 * 10 9 8 39 39 H 1.08999 * 109.46727 * 29.97964 * 12 11 10 40 40 H 1.08992 * 109.46868 * 149.98166 * 12 11 10 41 41 H 0.96999 * 120.00316 * 0.02562 * 13 12 11 42 42 H 0.97005 * 119.99400 * 0.02562 * 16 14 13 43 43 H 1.09008 * 109.46903 * 299.99300 * 17 16 14 44 44 H 1.08995 * 109.47663 * 59.99593 * 17 16 14 45 45 H 0.97001 * 120.00171 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.02728 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5824 2.4694 0.0000 7 6 6.2930 3.6278 0.0000 8 6 5.6328 4.8482 -0.0057 9 6 6.3574 6.0241 0.0007 10 6 7.7397 5.9858 0.0002 11 6 8.3999 4.7712 0.0001 12 6 9.9065 4.7332 0.0001 13 7 10.3946 4.7204 -1.3811 14 6 11.7192 4.6874 -1.6274 15 8 12.5091 4.6677 -0.7032 16 7 12.1684 4.6762 -2.8981 17 6 13.6083 4.6398 -3.1657 18 6 13.8425 4.6347 -4.6544 19 1 13.0028 4.6560 -5.3333 20 6 15.1288 4.6028 -5.1498 21 7 16.1514 4.5773 -4.3232 22 14 15.4190 4.5957 -6.9951 23 1 14.1134 4.6276 -7.7018 24 1 16.2174 5.7888 -7.3752 25 1 16.1573 3.3645 -7.3754 26 6 7.6797 3.5921 0.0000 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8574 0.6435 -0.8892 33 1 3.8568 0.6438 0.8907 34 1 3.8364 3.1227 -0.8904 35 1 3.8359 3.1237 0.8896 36 1 4.5532 4.8786 -0.0106 37 1 5.8439 6.9742 0.0011 38 1 8.3045 6.9064 0.0002 39 1 10.2921 5.6139 0.5137 40 1 10.2472 3.8345 0.5142 41 1 9.7645 4.7365 -2.1184 42 1 11.5383 4.6923 -3.6354 43 1 14.0817 5.5181 -2.7269 44 1 14.0368 3.7387 -2.7270 45 1 17.0563 4.5545 -4.6717 46 1 8.1959 2.6435 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426440468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:42 Heat of formation + Delta-G solvation = -99.561664 kcal Electronic energy + Delta-G solvation = -25216.547314 eV Core-core repulsion = 21299.428313 eV Total energy + Delta-G solvation = -3917.119000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.53524 -39.20400 -38.57617 -37.87667 -34.69451 -33.93749 -33.54078 -32.31288 -31.24428 -30.17971 -27.73422 -27.39347 -25.97620 -25.28719 -22.94945 -22.52171 -22.22769 -21.05461 -20.12891 -18.45812 -17.78290 -17.10989 -17.10171 -16.26974 -16.13712 -16.05589 -16.02451 -15.62697 -15.38199 -14.85615 -14.60025 -14.29409 -14.10238 -13.77859 -13.66000 -13.28190 -12.92902 -12.78139 -12.66604 -12.43026 -12.19677 -11.95667 -11.91853 -11.74768 -11.65659 -11.58117 -11.11859 -11.03298 -10.89011 -10.87486 -10.26971 -10.26371 -9.51728 -9.31319 -9.07612 -8.74809 -8.64194 -8.46189 -7.70674 -6.11836 -4.18035 0.97137 1.20025 2.53936 3.26655 3.27313 3.34085 3.37426 3.42320 3.77359 4.00334 4.28779 4.36775 4.39300 4.48206 4.50718 4.63045 4.69036 4.72131 4.81614 4.82970 4.84011 4.90618 5.09517 5.11943 5.13993 5.21509 5.24346 5.27132 5.47148 5.55825 5.60544 5.80144 5.88323 6.01773 6.16429 6.39687 6.48839 6.55649 6.87356 7.10853 7.17134 7.56693 7.60239 7.62013 7.95402 8.08912 8.81161 8.99267 9.37886 9.52569 10.98500 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.001735 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.736304 B =16134.374431 C =17219.281037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.121 4.121 5 C 0.065 3.935 6 O -0.312 6.312 7 C 0.126 3.874 8 C -0.206 4.206 9 C -0.083 4.083 10 C -0.136 4.136 11 C -0.060 4.060 12 C 0.182 3.818 13 N -0.754 5.754 14 C 0.693 3.307 15 O -0.601 6.601 16 N -0.729 5.729 17 C 0.266 3.734 18 C -0.541 4.541 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.131 4.131 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.393 0.607 42 H 0.386 0.614 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.265 0.735 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.067 -2.074 9.621 34.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.011 4.011 4 C -0.159 4.159 5 C -0.011 4.011 6 O -0.226 6.226 7 C 0.081 3.919 8 C -0.225 4.225 9 C -0.101 4.101 10 C -0.155 4.155 11 C -0.061 4.061 12 C 0.057 3.943 13 N -0.411 5.411 14 C 0.393 3.607 15 O -0.480 6.480 16 N -0.381 5.381 17 C 0.145 3.855 18 C -0.579 4.579 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.150 4.150 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.226 0.774 42 H 0.218 0.782 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -31.877 -2.472 10.477 33.645 hybrid contribution -0.834 0.447 -1.661 1.912 sum -32.711 -2.026 8.815 33.938 Atomic orbital electron populations 1.22776 0.80525 1.03088 1.00116 1.87878 1.20065 1.27507 1.95451 1.22317 0.93054 0.85142 1.00604 1.21373 0.92967 0.96135 1.05383 1.22572 0.78938 0.97937 1.01643 1.86054 1.18893 1.28863 1.88779 1.18924 0.91398 0.84685 0.96889 1.21245 1.00135 0.92227 1.08852 1.20930 0.93942 0.97585 0.97632 1.21075 0.94279 0.97698 1.02468 1.19789 0.95370 0.92456 0.98488 1.19913 0.87359 1.03130 0.83887 1.45154 1.06026 1.82472 1.07474 1.16143 0.81599 0.78396 0.84580 1.90875 1.54714 1.58718 1.43729 1.45709 1.11101 1.77197 1.04096 1.18986 0.73122 0.97614 0.95767 1.21277 0.92692 1.52824 0.91116 0.91904 1.24945 0.95762 0.94818 0.98522 1.69993 0.98745 1.49105 1.34466 0.86363 0.78293 0.77701 0.84528 1.19695 1.20838 1.20836 1.20400 0.90533 0.99206 1.04870 0.93890 0.89345 0.93915 0.92924 0.92875 0.89687 0.89738 0.91759 0.91803 0.85659 0.85633 0.85425 0.90773 0.90877 0.77435 0.78160 0.95723 0.95713 0.92551 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.93 10.70 -35.23 -0.38 -3.30 16 3 C 0.07 0.36 5.94 37.16 0.22 0.58 16 4 C -0.12 -0.77 5.95 -26.73 -0.16 -0.93 16 5 C 0.06 0.42 4.74 37.16 0.18 0.59 16 6 O -0.31 -3.11 10.14 -19.44 -0.20 -3.30 16 7 C 0.13 1.30 6.69 -39.22 -0.26 1.03 16 8 C -0.21 -1.76 9.04 -39.43 -0.36 -2.12 16 9 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 10 C -0.14 -1.34 9.70 -39.56 -0.38 -1.72 16 11 C -0.06 -0.67 5.25 -104.64 -0.55 -1.22 16 12 C 0.18 2.45 5.80 -5.19 -0.03 2.42 16 13 N -0.75 -11.66 5.55 -66.42 -0.37 -12.03 16 14 C 0.69 14.65 8.57 -86.92 -0.74 13.91 16 15 O -0.60 -15.31 16.34 5.29 0.09 -15.23 16 16 N -0.73 -15.99 5.55 -66.42 -0.37 -16.35 16 17 C 0.27 7.26 5.43 -5.20 -0.03 7.23 16 18 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 19 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 22 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.13 -1.46 9.64 -39.43 -0.38 -1.84 16 27 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.34 7.65 -51.93 -0.40 -0.05 16 35 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 36 H 0.13 0.78 6.30 -52.48 -0.33 0.45 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 40 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 41 H 0.39 5.10 8.48 -40.82 -0.35 4.75 16 42 H 0.39 7.27 8.34 -40.82 -0.34 6.93 16 43 H 0.02 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -34.86 392.92 -9.05 -43.90 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.26 Total: 5.50 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -2.20 Total: 4.51 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.00 Total: -54.09 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.49 Total: -21.83 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.86 -9.05 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426440468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.658 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds