Wall clock time and date at job start Tue Mar 31 2020 13:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 120.00285 * 2 1 4 4 O 1.21560 * 119.99752 * 0.02562 * 3 2 1 5 5 C 1.47857 * 120.00336 * 179.97438 * 3 2 1 6 6 C 1.39610 * 120.11351 * 359.97438 * 5 3 2 7 7 C 1.37962 * 119.95935 * 180.02562 * 6 5 3 8 8 C 1.38292 * 120.21158 * 359.72452 * 7 6 5 9 9 C 1.38811 * 120.23437 * 0.54833 * 8 7 6 10 10 O 1.35913 * 119.98225 * 179.72363 * 9 8 7 11 11 C 1.42903 * 116.99828 * 359.73037 * 10 9 8 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99820 * 12 11 10 14 14 O 1.42905 * 109.46848 * 294.99599 * 12 11 10 15 15 C 1.53002 * 109.46776 * 174.99924 * 12 11 10 16 16 N 1.46903 * 109.47041 * 184.99509 * 15 12 11 17 17 C 1.46904 * 110.99719 * 66.04855 * 16 15 12 18 18 C 1.46894 * 111.00142 * 189.99844 * 16 15 12 19 19 C 1.50705 * 109.47253 * 170.00380 * 18 16 15 20 20 H 1.07998 * 119.99533 * 359.97438 * 19 18 16 21 21 C 1.37878 * 120.00310 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99800 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00188 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47360 * 89.99676 * 23 21 19 25 25 H 1.48496 * 109.47242 * 209.99766 * 23 21 19 26 26 H 1.48498 * 109.47100 * 329.99971 * 23 21 19 27 27 C 1.38494 * 120.03167 * 359.45495 * 9 8 7 28 28 H 1.08999 * 109.46861 * 300.00025 * 1 2 3 29 29 H 1.08999 * 109.47049 * 59.99707 * 1 2 3 30 30 H 1.08996 * 109.47492 * 179.97438 * 1 2 3 31 31 H 0.96995 * 119.99969 * 180.02562 * 2 1 3 32 32 H 1.07990 * 120.01728 * 359.97438 * 6 5 3 33 33 H 1.07999 * 119.89027 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.87944 * 180.29725 * 8 7 6 35 35 H 1.09002 * 109.47382 * 59.99787 * 11 10 9 36 36 H 1.09001 * 109.46938 * 299.99773 * 11 10 9 37 37 H 0.96702 * 113.99974 * 300.00156 * 14 12 11 38 38 H 1.08993 * 109.47416 * 304.99509 * 15 12 11 39 39 H 1.09001 * 109.46966 * 65.00241 * 15 12 11 40 40 H 1.08996 * 109.47418 * 59.99912 * 17 16 15 41 41 H 1.09002 * 109.46997 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.46998 * 299.99753 * 17 16 15 43 43 H 1.08996 * 109.47743 * 290.00303 * 18 16 15 44 44 H 1.09002 * 109.47268 * 50.00352 * 18 16 15 45 45 H 0.97000 * 119.99908 * 180.02562 * 22 21 19 46 46 H 1.07998 * 120.10477 * 180.25242 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3179 -0.0405 0.0017 7 6 5.6976 -0.0368 0.0027 8 6 6.3902 1.1601 -0.0030 9 6 5.7023 2.3658 0.0016 10 8 6.3883 3.5391 0.0016 11 6 7.8149 3.4566 0.0027 12 6 8.4073 4.8672 0.0032 13 1 8.0039 5.4304 0.8446 14 8 8.0678 5.5268 -1.2183 15 6 9.9296 4.7810 0.1301 16 7 10.4884 6.1342 0.2508 17 6 10.0681 6.7670 1.5082 18 6 11.9527 6.1112 0.1368 19 6 12.4696 7.5219 0.0185 20 1 11.7792 8.3524 0.0268 21 6 13.8237 7.7523 -0.1013 22 7 14.6643 6.7409 -0.1118 23 14 14.4642 9.5008 -0.2486 24 1 14.7441 10.0413 1.1059 25 1 15.7138 9.5042 -1.0508 26 1 13.4439 10.3470 -0.9180 27 6 4.3174 2.3737 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 3.7801 -0.9770 0.0025 33 1 6.2383 -0.9717 0.0031 34 1 7.4702 1.1568 -0.0070 35 1 8.1487 2.9222 -0.8868 36 1 8.1472 2.9230 0.8932 37 1 8.3954 5.0800 -2.0108 38 1 10.1881 4.2008 1.0159 39 1 10.3411 4.2957 -0.7550 40 1 10.4163 6.1687 2.3502 41 1 10.4953 7.7678 1.5719 42 1 8.9805 6.8342 1.5354 43 1 12.3789 5.6413 1.0231 44 1 12.2394 5.5438 -0.7486 45 1 15.6170 6.9030 -0.1957 46 1 3.7810 3.3110 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568008708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:58 Heat of formation + Delta-G solvation = -88.069146 kcal Electronic energy + Delta-G solvation = -26056.602449 eV Core-core repulsion = 22139.981801 eV Total energy + Delta-G solvation = -3916.620647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78629 -39.75697 -38.16020 -37.05147 -35.44417 -35.09006 -32.56963 -31.68120 -31.11750 -29.85557 -27.36764 -27.28573 -26.51101 -24.49697 -23.37139 -22.76563 -21.52135 -20.76804 -20.28784 -19.06824 -17.08660 -16.78430 -16.65452 -16.57537 -16.33122 -15.94829 -15.62665 -15.28226 -14.97134 -14.76214 -14.40370 -14.28343 -14.03467 -13.67295 -13.56694 -13.35705 -13.23361 -12.79121 -12.71062 -12.47589 -12.27176 -11.94831 -11.55702 -11.42600 -11.21952 -11.11544 -10.93480 -10.79186 -10.71651 -10.39414 -10.31755 -10.06016 -9.73220 -9.65472 -9.36249 -9.19018 -8.56602 -8.46163 -7.27594 -6.05272 -4.06271 0.44569 1.04735 2.50038 2.60192 3.01075 3.31509 3.37711 3.43197 3.49734 4.22936 4.36427 4.41475 4.51070 4.57589 4.65060 4.69180 4.77178 4.90754 4.95189 5.05895 5.12538 5.12903 5.28038 5.31275 5.35069 5.36569 5.50498 5.57032 5.83213 5.86842 5.92174 5.95960 5.99076 6.11129 6.19675 6.27100 6.30182 6.73862 6.99429 7.13679 7.21673 7.27020 7.76595 7.77765 7.90521 8.04482 8.14236 8.50119 9.01630 9.58177 11.05690 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.038623 B = 0.001806 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.785685 B =15498.575988 C =15960.169268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.559 3.441 4 O -0.530 6.530 5 C -0.100 4.100 6 C -0.131 4.131 7 C -0.085 4.085 8 C -0.186 4.186 9 C 0.130 3.870 10 O -0.298 6.298 11 C 0.026 3.974 12 C 0.115 3.885 13 H 0.107 0.893 14 O -0.537 6.537 15 C 0.028 3.972 16 N -0.529 5.529 17 C 0.034 3.966 18 C 0.193 3.807 19 C -0.507 4.507 20 H 0.065 0.935 21 C 0.054 3.946 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.272 1.272 27 C -0.093 4.093 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.402 0.598 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.370 0.630 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.010 0.990 41 H 0.077 0.923 42 H 0.048 0.952 43 H -0.009 1.009 44 H 0.029 0.971 45 H 0.261 0.739 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.697 -20.234 0.803 30.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.346 3.654 4 O -0.407 6.407 5 C -0.103 4.103 6 C -0.150 4.150 7 C -0.103 4.103 8 C -0.205 4.205 9 C 0.084 3.916 10 O -0.211 6.211 11 C -0.050 4.050 12 C 0.055 3.945 13 H 0.125 0.875 14 O -0.340 6.340 15 C -0.101 4.101 16 N -0.253 5.253 17 C -0.115 4.115 18 C 0.068 3.932 19 C -0.545 4.545 20 H 0.083 0.917 21 C -0.147 4.147 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.197 1.197 27 C -0.112 4.112 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.237 0.763 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.216 0.784 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.029 0.971 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.008 0.992 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.502 -18.596 0.807 29.980 hybrid contribution 1.599 -0.821 0.292 1.821 sum -21.903 -19.417 1.099 29.291 Atomic orbital electron populations 1.21573 0.79039 1.02388 1.02659 1.45686 1.07962 1.08585 1.76231 1.18270 0.87168 0.83772 0.76147 1.90806 1.69879 1.31120 1.48862 1.19584 0.92421 0.93710 1.04631 1.21102 0.94554 0.96598 1.02738 1.20875 0.93745 0.97779 0.97919 1.21549 1.00930 0.92159 1.05830 1.18952 0.91556 0.85395 0.95673 1.86212 1.20017 1.27028 1.87811 1.23790 0.78216 1.00943 1.02086 1.21979 0.93645 0.89328 0.89555 0.87492 1.86661 1.79163 1.53511 1.14713 1.22624 0.93163 0.93311 1.01025 1.62009 1.13999 1.15019 1.34261 1.22295 0.98754 1.00815 0.89619 1.19759 0.79588 0.97939 0.95924 1.21166 0.91594 0.92334 1.49422 0.91714 1.24990 0.96880 0.97353 0.95432 1.69956 1.02723 1.30405 1.50920 0.86475 0.78297 0.84535 0.78006 1.20748 1.21263 1.19688 1.20490 0.90889 0.98844 1.00975 0.91971 0.91967 0.90465 0.76297 0.85678 0.85028 0.84786 0.91413 0.91081 0.78355 0.94994 0.90755 0.97142 0.90444 0.93338 0.99172 0.95272 0.92938 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 10.70 59.85 0.64 1.09 16 2 N -0.73 -4.69 5.66 -68.04 -0.39 -5.08 16 3 C 0.56 5.83 7.77 -12.33 -0.10 5.73 16 4 O -0.53 -7.62 16.35 5.31 0.09 -7.54 16 5 C -0.10 -0.99 5.87 -104.98 -0.62 -1.60 16 6 C -0.13 -0.92 9.54 -39.17 -0.37 -1.29 16 7 C -0.09 -0.61 10.03 -39.66 -0.40 -1.01 16 8 C -0.19 -1.68 9.03 -39.35 -0.36 -2.03 16 9 C 0.13 1.50 6.68 -39.28 -0.26 1.23 16 10 O -0.30 -3.88 10.10 -24.32 -0.25 -4.13 16 11 C 0.03 0.29 4.37 37.16 0.16 0.45 16 12 C 0.12 1.64 3.20 -26.73 -0.09 1.55 16 13 H 0.11 1.63 6.34 -51.93 -0.33 1.30 16 14 O -0.54 -8.48 13.25 -40.09 -0.53 -9.01 16 15 C 0.03 0.46 4.60 -3.82 -0.02 0.44 16 16 N -0.53 -11.20 4.70 -244.37 -1.15 -12.35 16 17 C 0.03 0.66 9.14 60.07 0.55 1.21 16 18 C 0.19 4.95 4.72 -4.98 -0.02 4.92 16 19 C -0.51 -14.22 8.46 -34.44 -0.29 -14.51 16 20 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 21 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 23 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 27 C -0.09 -1.09 9.53 -39.02 -0.37 -1.46 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.40 1.33 6.86 -40.82 -0.28 1.05 16 32 H 0.13 0.44 6.40 -52.49 -0.34 0.11 16 33 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.13 1.02 6.28 -52.48 -0.33 0.69 16 35 H 0.07 0.64 7.64 -51.93 -0.40 0.24 16 36 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 37 H 0.37 4.57 9.05 45.56 0.41 4.98 16 38 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 39 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 40 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.08 1.63 6.76 -51.93 -0.35 1.28 16 42 H 0.05 0.83 6.37 -51.93 -0.33 0.50 16 43 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 44 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.15 1.86 7.65 -52.49 -0.40 1.46 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -35.35 382.49 -8.41 -43.76 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.03 Total: 1.56 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.64 Total: -3.83 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.80 Total: -43.23 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.69 Total: -20.67 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.35 -8.41 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568008708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.311 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds