Wall clock time and date at job start Tue Mar 31 2020 14:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99782 * 2 1 4 4 H 1.48500 * 109.47223 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46992 * 300.00719 * 3 2 1 6 6 H 1.48497 * 109.46788 * 60.00247 * 3 2 1 7 7 C 1.37877 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99909 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99796 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47207 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99984 * 270.00124 * 10 9 7 12 12 C 1.52998 * 109.47332 * 269.99854 * 11 10 9 13 13 N 1.46895 * 109.47473 * 180.02562 * 12 11 10 14 14 C 1.47010 * 111.00148 * 293.63529 * 13 12 11 15 15 C 1.53099 * 109.26119 * 177.60461 * 14 13 12 16 16 O 1.43017 * 109.25268 * 56.85065 * 15 14 13 17 17 C 1.43020 * 113.74016 * 301.32409 * 16 15 14 18 18 C 1.47022 * 111.00223 * 169.99939 * 13 12 11 19 19 C 1.34769 * 120.00161 * 89.99740 * 10 9 7 20 20 O 1.21285 * 120.00559 * 179.97438 * 19 10 9 21 21 C 1.50699 * 120.00037 * 0.02562 * 19 10 9 22 22 C 1.50704 * 109.47511 * 179.97438 * 21 19 10 23 23 C 1.34664 * 126.58651 * 275.03761 * 22 21 19 24 24 N 1.34134 * 108.01786 * 179.74146 * 23 22 21 25 25 C 1.30496 * 109.25675 * 0.37372 * 24 23 22 26 26 N 1.35047 * 108.70161 * 359.62603 * 25 24 23 27 27 H 0.96997 * 126.40535 * 180.25138 * 26 25 24 28 28 H 0.97001 * 120.00140 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46873 * 59.99999 * 9 7 2 30 30 H 1.09004 * 109.47079 * 299.99763 * 9 7 2 31 31 H 1.09000 * 109.47279 * 29.99655 * 11 10 9 32 32 H 1.09008 * 109.47279 * 149.99731 * 11 10 9 33 33 H 1.09009 * 109.47024 * 300.00136 * 12 11 10 34 34 H 1.09001 * 109.46829 * 59.99459 * 12 11 10 35 35 H 1.09006 * 109.50404 * 297.54208 * 14 13 12 36 36 H 1.08997 * 109.50853 * 57.67016 * 14 13 12 37 37 H 1.08998 * 109.50690 * 296.91904 * 15 14 13 38 38 H 1.08997 * 109.54466 * 176.79957 * 15 14 13 39 39 H 1.08989 * 109.50535 * 298.74407 * 17 16 15 40 40 H 1.08999 * 109.54318 * 178.62851 * 17 16 15 41 41 H 1.08997 * 109.50283 * 302.32953 * 18 13 12 42 42 H 1.09001 * 109.50108 * 62.41206 * 18 13 12 43 43 H 1.08992 * 109.47512 * 59.99585 * 21 19 10 44 44 H 1.09004 * 109.47075 * 299.99537 * 21 19 10 45 45 H 1.07998 * 125.99171 * 359.92955 * 23 22 21 46 46 H 1.08002 * 125.65353 * 179.89694 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 2.6782 -4.1687 -1.2711 12 6 1.7473 -5.2998 -1.7126 13 7 2.2239 -5.8579 -2.9851 14 6 2.1054 -4.8727 -4.0698 15 6 2.6670 -5.4734 -5.3612 16 8 1.9741 -6.6893 -5.6560 17 6 2.0693 -7.6717 -4.6210 18 6 1.5016 -7.0933 -3.3221 19 6 2.6420 -4.1252 1.1648 20 8 3.4299 -5.0474 1.1638 21 6 2.1530 -3.5535 2.4705 22 6 2.7900 -4.2986 3.6152 23 6 2.3574 -5.4503 4.1630 24 7 3.2028 -5.7838 5.1495 25 6 4.1384 -4.8784 5.2390 26 7 3.9198 -3.9353 4.2974 27 1 4.4621 -3.1478 4.1345 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5566 -0.8903 30 1 0.6249 -2.5571 0.8897 31 1 2.6853 -3.3868 -2.0305 32 1 3.6879 -4.5588 -1.1418 33 1 1.7402 -6.0818 -0.9533 34 1 0.7377 -4.9097 -1.8419 35 1 1.0561 -4.6151 -4.2144 36 1 2.6685 -3.9762 -3.8105 37 1 3.7293 -5.6815 -5.2339 38 1 2.5297 -4.7684 -6.1811 39 1 3.1142 -7.9436 -4.4722 40 1 1.4997 -8.5567 -4.9047 41 1 1.6241 -7.8176 -2.5170 42 1 0.4427 -6.8712 -3.4540 43 1 1.0695 -3.6559 2.5290 44 1 2.4220 -2.4988 2.5287 45 1 1.4846 -6.0091 3.8591 46 1 4.9549 -4.8846 5.9458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900455708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:07 Heat of formation + Delta-G solvation = -16.111035 kcal Electronic energy + Delta-G solvation = -27672.173929 eV Core-core repulsion = 23790.966370 eV Total energy + Delta-G solvation = -3881.207558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75777 -39.66919 -38.98191 -36.16286 -34.85303 -32.77372 -32.47845 -31.59319 -31.23138 -29.76449 -27.34389 -27.04500 -25.44959 -24.04840 -23.09200 -22.15966 -21.27445 -20.63493 -20.31708 -18.68591 -17.41106 -16.86358 -16.56409 -16.39791 -16.16238 -15.46875 -15.13657 -15.02798 -14.86192 -14.63914 -14.40817 -14.26726 -13.95573 -13.59812 -13.20399 -13.17036 -12.66233 -12.61268 -12.45197 -12.27054 -12.06716 -11.69302 -11.56185 -11.43161 -11.32796 -11.02620 -10.91836 -10.71634 -10.45534 -10.23000 -9.89896 -9.77692 -9.73225 -9.70938 -9.21375 -8.70097 -8.37370 -8.06174 -7.84365 -6.31660 -4.40191 2.30113 3.11125 3.20664 3.22467 3.27500 3.34755 3.43347 3.60378 3.81066 4.14402 4.24264 4.83327 4.87692 4.97377 4.99764 5.01660 5.10364 5.14533 5.23271 5.31369 5.44496 5.48927 5.53431 5.55489 5.60944 5.73460 5.74506 5.79988 5.90384 5.92429 5.93313 6.03071 6.22473 6.38414 6.54039 6.59671 6.96425 6.98834 7.00976 7.05009 7.08310 7.41038 7.61434 7.62962 7.91093 8.20106 8.29929 8.65648 8.90102 9.28949 10.74840 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007675 B = 0.004445 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3647.392339 B = 6297.367326 C = 9371.176485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.236 3.764 10 N -0.595 5.595 11 C 0.127 3.873 12 C 0.045 3.955 13 N -0.533 5.533 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.518 3.482 20 O -0.561 6.561 21 C -0.065 4.065 22 C 0.014 3.986 23 C -0.021 4.021 24 N -0.497 5.497 25 C 0.173 3.827 26 N -0.562 5.562 27 H 0.418 0.582 28 H 0.266 0.734 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.164 0.836 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -7.831 -2.139 8.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.116 3.884 10 N -0.326 5.326 11 C 0.003 3.997 12 C -0.084 4.084 13 N -0.259 5.259 14 C -0.116 4.116 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.305 3.695 20 O -0.441 6.441 21 C -0.106 4.106 22 C -0.102 4.102 23 C -0.168 4.168 24 N -0.216 5.216 25 C -0.111 4.111 26 N -0.165 5.165 27 H 0.255 0.745 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.181 0.819 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.230 -9.063 -1.765 10.157 hybrid contribution -0.085 2.541 -0.427 2.578 sum 4.145 -6.522 -2.191 8.033 Atomic orbital electron populations 1.69920 1.06010 1.27375 1.49330 1.24943 0.94832 0.99298 0.94612 0.86486 0.80077 0.83288 0.77910 1.19699 1.20746 1.20771 1.21507 0.93599 0.90414 1.52478 0.92052 1.19472 0.87502 0.82663 0.98752 1.48157 1.45629 1.34674 1.04129 1.21154 0.97871 0.94679 0.85966 1.22502 0.97319 0.98196 0.90380 1.62138 1.56142 1.04924 1.02706 1.22879 1.00802 0.96180 0.91743 1.22679 0.96052 0.86126 0.96378 1.87958 1.74966 1.25536 1.42304 1.22642 1.01011 0.91039 0.86501 1.22763 0.96415 0.93237 0.98589 1.20290 0.81149 0.82566 0.85491 1.90653 1.35737 1.29907 1.87754 1.20081 1.01591 1.00743 0.88178 1.20773 0.91128 0.99539 0.98778 1.21919 1.01948 0.95770 0.97206 1.70198 1.04719 1.26428 1.20282 1.24777 1.01906 0.87817 0.96562 1.43199 1.22573 1.22879 1.27871 0.74475 0.92429 0.94701 0.94242 0.90543 0.90229 0.90532 0.94372 0.93742 0.88929 0.92282 0.88507 0.92297 0.88677 0.89668 0.94025 0.86859 0.87093 0.81856 0.78026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.14 13.29 55.43 0.74 -22.40 16 2 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 19.38 29.54 -169.99 -5.02 14.35 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.00 9.28 -34.44 -0.32 -13.32 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.24 5.12 4.96 -5.20 -0.03 5.10 16 10 N -0.59 -11.52 2.46 -175.06 -0.43 -11.95 16 11 C 0.13 2.25 5.34 -4.04 -0.02 2.23 16 12 C 0.04 0.71 5.28 -3.83 -0.02 0.69 16 13 N -0.53 -7.49 4.73 -234.31 -1.11 -8.60 16 14 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 15 C 0.06 0.74 7.01 37.21 0.26 1.00 16 16 O -0.39 -4.96 10.83 -35.23 -0.38 -5.34 16 17 C 0.07 0.71 7.01 37.21 0.26 0.97 16 18 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 19 C 0.52 9.99 7.67 -10.99 -0.08 9.91 16 20 O -0.56 -12.14 15.61 5.55 0.09 -12.05 16 21 C -0.07 -1.09 4.81 -29.03 -0.14 -1.23 16 22 C 0.01 0.23 5.73 -81.60 -0.47 -0.23 16 23 C -0.02 -0.35 11.79 -17.81 -0.21 -0.56 16 24 N -0.50 -8.34 11.25 -14.66 -0.16 -8.50 16 25 C 0.17 2.34 13.04 -90.37 -1.18 1.16 16 26 N -0.56 -7.74 6.15 -10.30 -0.06 -7.81 16 27 H 0.42 4.60 8.96 -40.82 -0.37 4.24 16 28 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 0.87 6.44 -51.93 -0.33 0.54 16 31 H 0.08 1.35 6.45 -51.93 -0.33 1.01 16 32 H 0.08 1.49 7.42 -51.92 -0.39 1.11 16 33 H 0.08 1.27 8.04 -51.92 -0.42 0.86 16 34 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.21 6.38 -51.93 -0.33 0.88 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.63 8.14 -51.94 -0.42 0.20 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.11 1.77 7.40 -51.93 -0.38 1.39 16 44 H 0.11 1.89 8.00 -51.93 -0.42 1.47 16 45 H 0.16 2.51 8.06 -52.49 -0.42 2.08 16 46 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -30.89 378.11 -9.89 -40.78 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.16 Total: 8.23 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -2.08 Total: 7.60 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -1.03 Total: -59.26 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.29 Total: -17.40 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.89 -9.89 -40.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900455708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.669 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds