Wall clock time and date at job start Tue Mar 31 2020 14:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99782 * 2 1 4 4 H 1.48500 * 109.47223 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46992 * 300.00719 * 3 2 1 6 6 H 1.48497 * 109.46788 * 60.00247 * 3 2 1 7 7 C 1.37877 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99909 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99796 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47207 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99984 * 270.00124 * 10 9 7 12 12 C 1.52998 * 109.47332 * 269.99854 * 11 10 9 13 13 N 1.46895 * 109.47473 * 180.02562 * 12 11 10 14 14 C 1.47010 * 111.00148 * 293.63529 * 13 12 11 15 15 C 1.53099 * 109.26119 * 177.60461 * 14 13 12 16 16 O 1.43017 * 109.25268 * 56.85065 * 15 14 13 17 17 C 1.43020 * 113.74016 * 301.32409 * 16 15 14 18 18 C 1.47022 * 111.00223 * 169.99939 * 13 12 11 19 19 C 1.34769 * 120.00161 * 89.99740 * 10 9 7 20 20 O 1.21285 * 120.00559 * 179.97438 * 19 10 9 21 21 C 1.50699 * 120.00037 * 0.02562 * 19 10 9 22 22 C 1.50704 * 109.47511 * 179.97438 * 21 19 10 23 23 C 1.34664 * 126.58651 * 275.03761 * 22 21 19 24 24 N 1.34134 * 108.01786 * 179.74146 * 23 22 21 25 25 C 1.30496 * 109.25675 * 0.37372 * 24 23 22 26 26 N 1.35047 * 108.70161 * 359.62603 * 25 24 23 27 27 H 0.96997 * 126.40535 * 180.25138 * 26 25 24 28 28 H 0.97001 * 120.00140 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46873 * 59.99999 * 9 7 2 30 30 H 1.09004 * 109.47079 * 299.99763 * 9 7 2 31 31 H 1.09000 * 109.47279 * 29.99655 * 11 10 9 32 32 H 1.09008 * 109.47279 * 149.99731 * 11 10 9 33 33 H 1.09009 * 109.47024 * 300.00136 * 12 11 10 34 34 H 1.09001 * 109.46829 * 59.99459 * 12 11 10 35 35 H 1.09006 * 109.50404 * 297.54208 * 14 13 12 36 36 H 1.08997 * 109.50853 * 57.67016 * 14 13 12 37 37 H 1.08998 * 109.50690 * 296.91904 * 15 14 13 38 38 H 1.08997 * 109.54466 * 176.79957 * 15 14 13 39 39 H 1.08989 * 109.50535 * 298.74407 * 17 16 15 40 40 H 1.08999 * 109.54318 * 178.62851 * 17 16 15 41 41 H 1.08997 * 109.50283 * 302.32953 * 18 13 12 42 42 H 1.09001 * 109.50108 * 62.41206 * 18 13 12 43 43 H 1.08992 * 109.47512 * 59.99585 * 21 19 10 44 44 H 1.09004 * 109.47075 * 299.99537 * 21 19 10 45 45 H 1.07998 * 125.99171 * 359.92955 * 23 22 21 46 46 H 1.08002 * 125.65353 * 179.89694 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 2.6782 -4.1687 -1.2711 12 6 1.7473 -5.2998 -1.7126 13 7 2.2239 -5.8579 -2.9851 14 6 2.1054 -4.8727 -4.0698 15 6 2.6670 -5.4734 -5.3612 16 8 1.9741 -6.6893 -5.6560 17 6 2.0693 -7.6717 -4.6210 18 6 1.5016 -7.0933 -3.3221 19 6 2.6420 -4.1252 1.1648 20 8 3.4299 -5.0474 1.1638 21 6 2.1530 -3.5535 2.4705 22 6 2.7900 -4.2986 3.6152 23 6 2.3574 -5.4503 4.1630 24 7 3.2028 -5.7838 5.1495 25 6 4.1384 -4.8784 5.2390 26 7 3.9198 -3.9353 4.2974 27 1 4.4621 -3.1478 4.1345 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5566 -0.8903 30 1 0.6249 -2.5571 0.8897 31 1 2.6853 -3.3868 -2.0305 32 1 3.6879 -4.5588 -1.1418 33 1 1.7402 -6.0818 -0.9533 34 1 0.7377 -4.9097 -1.8419 35 1 1.0561 -4.6151 -4.2144 36 1 2.6685 -3.9762 -3.8105 37 1 3.7293 -5.6815 -5.2339 38 1 2.5297 -4.7684 -6.1811 39 1 3.1142 -7.9436 -4.4722 40 1 1.4997 -8.5567 -4.9047 41 1 1.6241 -7.8176 -2.5170 42 1 0.4427 -6.8712 -3.4540 43 1 1.0695 -3.6559 2.5290 44 1 2.4220 -2.4988 2.5287 45 1 1.4846 -6.0091 3.8591 46 1 4.9549 -4.8846 5.9458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900455708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:06 Heat of formation + Delta-G solvation = -36.316753 kcal Electronic energy + Delta-G solvation = -27673.050114 eV Core-core repulsion = 23790.966370 eV Total energy + Delta-G solvation = -3882.083744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.93378 -40.91552 -40.31356 -37.43406 -36.37175 -34.55423 -33.76142 -32.85259 -32.19972 -31.09769 -29.05654 -28.27527 -26.70833 -25.05022 -24.88899 -23.42414 -22.42711 -21.83400 -21.37426 -20.16250 -18.74242 -18.55416 -18.00288 -17.74287 -17.15971 -16.82757 -16.39613 -16.25253 -16.18622 -15.99195 -15.57304 -15.57090 -15.15565 -14.82343 -14.46776 -14.39067 -14.33600 -13.99229 -13.88258 -13.62494 -13.33751 -13.18980 -12.97094 -12.86026 -12.63666 -12.49323 -12.33502 -12.14326 -11.87448 -11.70597 -11.46326 -11.00629 -10.94977 -10.80031 -10.72294 -10.57653 -9.60018 -9.41681 -9.28835 -8.21628 -6.36149 1.10829 1.39844 1.44740 1.53322 1.72363 2.08898 2.27772 2.35763 2.43333 2.84082 2.98110 3.09765 3.72493 3.76736 3.85951 3.96224 3.97842 4.04032 4.11621 4.17821 4.20521 4.31263 4.37986 4.44127 4.57140 4.59263 4.63240 4.70159 4.74905 4.77978 4.80154 4.84449 4.91643 4.96197 5.00113 5.20678 5.31376 5.62725 5.74914 5.78731 5.89205 5.90304 6.03879 6.15061 6.52749 6.60529 6.79491 7.14033 7.27905 7.39740 8.84015 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007675 B = 0.004445 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3647.392339 B = 6297.367326 C = 9371.176485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.252 3.748 10 N -0.596 5.596 11 C 0.131 3.869 12 C 0.060 3.940 13 N -0.539 5.539 14 C 0.012 3.988 15 C 0.068 3.932 16 O -0.403 6.403 17 C 0.066 3.934 18 C 0.017 3.983 19 C 0.517 3.483 20 O -0.583 6.583 21 C -0.055 4.055 22 C -0.003 4.003 23 C -0.037 4.037 24 N -0.534 5.534 25 C 0.191 3.809 26 N -0.558 5.558 27 H 0.431 0.569 28 H 0.268 0.732 29 H 0.018 0.982 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.034 0.966 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.037 0.963 43 H 0.121 0.879 44 H 0.109 0.891 45 H 0.166 0.834 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -7.720 -2.033 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.175 4.175 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.072 0.928 9 C 0.131 3.869 10 N -0.327 5.327 11 C 0.007 3.993 12 C -0.069 4.069 13 N -0.265 5.265 14 C -0.116 4.116 15 C -0.009 4.009 16 O -0.322 6.322 17 C -0.010 4.010 18 C -0.111 4.111 19 C 0.306 3.694 20 O -0.465 6.465 21 C -0.095 4.095 22 C -0.120 4.120 23 C -0.184 4.184 24 N -0.253 5.253 25 C -0.093 4.093 26 N -0.162 5.162 27 H 0.271 0.729 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.111 0.889 42 H 0.055 0.945 43 H 0.139 0.861 44 H 0.127 0.873 45 H 0.184 0.816 46 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 5.389 -8.949 -1.676 10.580 hybrid contribution -0.399 2.458 -0.442 2.529 sum 4.989 -6.492 -2.118 8.457 Atomic orbital electron populations 1.70004 1.07202 1.28139 1.50358 1.25585 0.95438 1.02089 0.94377 0.85581 0.78958 0.79795 0.77775 1.19422 1.20808 1.20367 1.21664 0.93300 0.91387 1.51920 0.92752 1.19145 0.87378 0.82669 0.97712 1.48138 1.45267 1.34242 1.05008 1.21154 0.97695 0.95134 0.85303 1.22231 0.96255 0.97114 0.91281 1.62157 1.56395 1.05733 1.02227 1.22916 1.00278 0.96106 0.92331 1.22747 0.96065 0.86170 0.95937 1.87944 1.75223 1.26027 1.42965 1.22776 1.01649 0.91279 0.85337 1.22863 0.96047 0.92472 0.99763 1.20687 0.80558 0.82092 0.86088 1.90633 1.36816 1.30953 1.88099 1.19960 1.02084 1.00337 0.87155 1.20644 0.92371 0.99787 0.99167 1.22123 1.02483 0.96174 0.97657 1.70203 1.05983 1.28105 1.21051 1.25705 1.01523 0.86178 0.95879 1.43222 1.21975 1.23454 1.27515 0.72948 0.92324 0.96377 0.94484 0.90721 0.91223 0.91454 0.95272 0.94746 0.89276 0.91721 0.86656 0.91855 0.86255 0.88941 0.94498 0.86099 0.87309 0.81631 0.73498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.78 13.29 21.45 0.28 -47.49 16 2 C 0.03 1.27 5.46 84.65 0.46 1.74 16 3 Si 0.95 39.25 29.54 68.60 2.03 41.27 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.54 -26.09 9.28 25.60 0.24 -25.85 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.25 11.06 4.96 85.63 0.43 11.49 16 10 N -0.60 -23.40 2.46 -826.16 -2.03 -25.43 16 11 C 0.13 4.69 5.34 86.38 0.46 5.16 16 12 C 0.06 1.93 5.28 86.30 0.46 2.39 16 13 N -0.54 -15.05 4.73 -895.21 -4.23 -19.28 16 14 C 0.01 0.30 5.44 86.32 0.47 0.77 16 15 C 0.07 1.46 7.01 72.02 0.50 1.97 16 16 O -0.40 -9.64 10.83 -148.98 -1.61 -11.25 16 17 C 0.07 1.33 7.01 72.01 0.50 1.84 16 18 C 0.02 0.39 5.65 86.31 0.49 0.88 16 19 C 0.52 20.07 7.67 87.66 0.67 20.75 16 20 O -0.58 -25.36 15.61 -3.04 -0.05 -25.40 16 21 C -0.05 -1.83 4.81 29.10 0.14 -1.69 16 22 C 0.00 -0.09 5.73 40.95 0.23 0.14 16 23 C -0.04 -1.24 11.79 83.52 0.98 -0.26 16 24 N -0.53 -17.29 11.25 -200.31 -2.25 -19.54 16 25 C 0.19 4.72 13.04 180.26 2.35 7.07 16 26 N -0.56 -14.42 6.15 -186.49 -1.15 -15.57 16 27 H 0.43 8.65 8.96 -92.71 -0.83 7.82 16 28 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 29 H 0.02 0.86 8.07 -2.39 -0.02 0.84 16 30 H 0.04 1.66 6.44 -2.39 -0.02 1.64 16 31 H 0.07 2.68 6.45 -2.39 -0.02 2.67 16 32 H 0.07 2.65 7.42 -2.38 -0.02 2.63 16 33 H 0.07 2.28 8.04 -2.38 -0.02 2.26 16 34 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 35 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.09 2.33 6.38 -2.39 -0.02 2.31 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 42 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 43 H 0.12 3.81 7.40 -2.39 -0.02 3.79 16 44 H 0.11 3.68 8.00 -2.38 -0.02 3.66 16 45 H 0.17 5.17 8.06 -2.91 -0.02 5.15 16 46 H 0.25 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -65.03 378.11 -0.46 -65.50 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.16 Total: 30.80 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 8.39 Total: 26.39 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -9.38 Total: -127.30 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.66 Total: -36.66 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.27 kcal Total: -65.03 -0.46 -65.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900455708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.182 kcal (2) G-P(sol) polarization free energy of solvation -65.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds