Wall clock time and date at job start Tue Mar 31 2020 13:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35248 * 126.07528 * 2 1 4 4 C 1.40400 * 107.86643 * 180.15476 * 3 2 1 5 5 N 1.40193 * 125.96838 * 179.82147 * 4 3 2 6 6 C 1.34775 * 120.00113 * 359.72699 * 5 4 3 7 7 O 1.21588 * 120.00492 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00005 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99987 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.46972 * 324.99241 * 9 8 6 11 11 C 1.52999 * 109.47266 * 84.99517 * 9 8 6 12 12 C 1.53001 * 109.47093 * 204.99415 * 9 8 6 13 13 H 1.09000 * 110.27870 * 179.36124 * 12 9 8 14 14 C 1.54951 * 110.30685 * 57.16658 * 12 9 8 15 15 C 1.55312 * 100.94225 * 204.63870 * 14 12 9 16 16 C 1.54380 * 102.25056 * 34.13333 * 15 14 12 17 17 O 1.43245 * 107.59000 * 338.64209 * 16 15 14 18 18 N 1.31201 * 108.05795 * 359.56666 * 4 3 2 19 19 N 1.34968 * 126.07140 * 179.67808 * 2 1 3 20 20 C 1.46504 * 125.97373 * 0.02562 * 19 2 1 21 21 C 1.50702 * 109.47047 * 270.00046 * 20 19 2 22 22 H 1.07999 * 119.99893 * 0.02562 * 21 20 19 23 23 C 1.37881 * 119.99875 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99991 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99900 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47268 * 59.99970 * 25 23 21 27 27 H 1.48499 * 109.47065 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46983 * 299.99986 * 25 23 21 29 29 H 1.09005 * 109.46986 * 270.32386 * 1 2 3 30 30 H 1.08998 * 109.46540 * 30.32260 * 1 2 3 31 31 H 1.08990 * 109.47295 * 150.32070 * 1 2 3 32 32 H 1.08001 * 126.06376 * 359.97438 * 3 2 1 33 33 H 0.97003 * 120.00397 * 179.71821 * 5 4 3 34 34 H 0.97003 * 120.00505 * 359.97438 * 8 6 5 35 35 H 1.08996 * 109.46951 * 300.00008 * 11 9 8 36 36 H 1.09006 * 109.47044 * 60.00118 * 11 9 8 37 37 H 1.09005 * 109.46730 * 179.97438 * 11 9 8 38 38 H 1.09000 * 111.12523 * 322.55899 * 14 12 9 39 39 H 1.09000 * 111.12500 * 86.68017 * 14 12 9 40 40 H 1.08999 * 110.84840 * 275.94257 * 15 14 12 41 41 H 1.08999 * 110.84966 * 152.32055 * 15 14 12 42 42 H 1.08996 * 109.83192 * 219.13077 * 16 15 14 43 43 H 1.09002 * 109.83458 * 98.15431 * 16 15 14 44 44 H 1.09002 * 109.47267 * 30.00079 * 20 19 2 45 45 H 1.08996 * 109.47130 * 150.00119 * 20 19 2 46 46 H 0.96996 * 119.99980 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6544 -0.0036 5 7 4.7738 1.4749 -0.0083 6 6 4.6371 2.8157 -0.0153 7 8 3.5279 3.3138 -0.0180 8 7 5.7299 3.6045 -0.0193 9 6 5.5813 5.0620 -0.0274 10 1 4.7073 5.3347 -0.6188 11 6 5.4039 5.5646 1.4067 12 6 6.8305 5.6986 -0.6401 13 1 6.7290 6.7836 -0.6629 14 6 7.0688 5.1484 -2.0688 15 6 8.5983 5.3722 -2.2196 16 6 9.1073 5.1358 -0.7814 17 8 7.9988 5.3228 0.1063 18 7 3.6337 -0.6576 0.0037 19 7 2.3017 -1.0909 0.0061 20 6 1.8501 -2.4846 0.0134 21 6 1.6947 -2.9548 1.4368 22 1 1.9104 -2.2826 2.2541 23 6 1.2762 -4.2429 1.6954 24 7 1.0131 -5.0612 0.7001 25 14 1.0829 -4.8255 3.4597 26 1 0.0820 -3.9767 4.1545 27 1 0.6253 -6.2382 3.4671 28 1 2.3886 -4.7250 4.1600 29 1 -0.3633 0.0058 1.0277 30 1 -0.3632 0.8871 -0.5188 31 1 -0.3633 -0.8928 -0.5088 32 1 1.9722 2.1211 -0.0004 33 1 5.6588 1.0777 -0.0064 34 1 6.6149 3.2073 -0.0168 35 1 4.5140 5.1110 1.8431 36 1 6.2780 5.2918 1.9981 37 1 5.2938 6.6490 1.4006 38 1 6.8190 4.0890 -2.1286 39 1 6.5122 5.7231 -2.8091 40 1 8.8112 6.3908 -2.5439 41 1 9.0306 4.6463 -2.9083 42 1 9.8947 5.8515 -0.5455 43 1 9.4894 4.1193 -0.6867 44 1 0.8916 -2.5586 -0.5004 45 1 2.5849 -3.1073 -0.4968 46 1 0.7184 -5.9672 0.8821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271150389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:54 Heat of formation + Delta-G solvation = -21.630494 kcal Electronic energy + Delta-G solvation = -27148.610015 eV Core-core repulsion = 23267.163114 eV Total energy + Delta-G solvation = -3881.446900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.31383 -41.28296 -40.18637 -36.74269 -35.99865 -35.29946 -33.24492 -33.00226 -32.64446 -31.70386 -29.17270 -28.50429 -27.84747 -25.27646 -24.53582 -23.19670 -22.44118 -21.47548 -21.31803 -21.05789 -19.24843 -18.76903 -17.95373 -17.48389 -17.24708 -16.80602 -16.69782 -16.35356 -15.97535 -15.77224 -15.58299 -14.94479 -14.67685 -14.51032 -14.30596 -14.21663 -14.01753 -13.78394 -13.68579 -13.52391 -13.18512 -13.12274 -12.85055 -12.73133 -12.65408 -12.43940 -12.23388 -12.14939 -12.05320 -11.75667 -11.65389 -11.55256 -11.34729 -11.11235 -10.72626 -10.48448 -10.17120 -9.54714 -9.06126 -8.31686 -6.49509 1.03751 1.12963 1.38415 1.40025 1.49095 1.68778 2.09407 2.35773 2.41081 2.83184 2.97556 3.13911 3.50662 3.71002 3.87824 4.03141 4.14980 4.18417 4.27724 4.31475 4.41501 4.46317 4.59758 4.73256 4.74567 4.78875 4.87444 4.90679 4.91040 4.94930 4.99147 5.03211 5.04091 5.06177 5.16711 5.23823 5.27438 5.36081 5.54428 5.56208 5.82193 5.87271 5.99257 6.08571 6.28709 6.62344 6.76128 7.14353 7.21233 7.44729 8.73774 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.002384 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.479286 B =11741.703388 C =11956.731776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.086 3.914 3 C -0.296 4.296 4 C 0.292 3.708 5 N -0.637 5.637 6 C 0.713 3.287 7 O -0.598 6.598 8 N -0.713 5.713 9 C 0.163 3.837 10 H 0.095 0.905 11 C -0.157 4.157 12 C 0.079 3.921 13 H 0.104 0.896 14 C -0.155 4.155 15 C -0.149 4.149 16 C 0.043 3.957 17 O -0.393 6.393 18 N -0.361 5.361 19 N -0.344 5.344 20 C 0.276 3.724 21 C -0.553 4.553 22 H 0.049 0.951 23 C 0.023 3.977 24 N -0.918 5.918 25 Si 0.970 3.030 26 H -0.266 1.266 27 H -0.272 1.272 28 H -0.276 1.276 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.167 0.833 33 H 0.419 0.581 34 H 0.410 0.590 35 H 0.038 0.962 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.024 0.976 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.242 23.486 -5.409 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.327 4.327 4 C 0.037 3.963 5 N -0.289 5.289 6 C 0.412 3.588 7 O -0.475 6.475 8 N -0.370 5.370 9 C 0.059 3.941 10 H 0.113 0.887 11 C -0.216 4.216 12 C 0.021 3.979 13 H 0.122 0.878 14 C -0.193 4.193 15 C -0.187 4.187 16 C -0.033 4.033 17 O -0.313 6.313 18 N -0.192 5.192 19 N -0.127 5.127 20 C 0.157 3.843 21 C -0.591 4.591 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.794 3.206 26 H -0.190 1.190 27 H -0.197 1.197 28 H -0.202 1.202 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.184 0.816 33 H 0.256 0.744 34 H 0.246 0.754 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.910 22.608 -5.251 26.559 hybrid contribution 0.395 -0.551 0.617 0.917 sum 13.305 22.057 -4.634 26.173 Atomic orbital electron populations 1.20460 0.85377 1.04190 1.03888 1.21743 0.96634 0.86460 0.99555 1.21394 0.89879 0.99860 1.21580 1.18953 0.88089 0.88898 1.00344 1.41408 1.06987 1.03906 1.76582 1.15777 0.85329 0.80005 0.77652 1.90831 1.25070 1.73796 1.57845 1.44929 1.06979 1.06362 1.78699 1.21110 0.98050 0.77211 0.97774 0.88745 1.22083 1.01405 1.02084 0.95991 1.23346 0.84604 0.99566 0.90344 0.87844 1.23334 0.97034 1.02561 0.96342 1.23110 0.94664 1.03925 0.96990 1.23293 0.89253 1.01880 0.88915 1.88430 1.19150 1.90279 1.33458 1.77164 1.00047 1.09772 1.32174 1.48760 1.01679 1.07480 1.54752 1.19229 0.94898 0.72445 0.97715 1.21411 1.47554 0.98378 0.91800 0.93321 1.25724 0.93962 0.95877 1.02237 1.69992 1.45044 1.07428 1.33146 0.85425 0.78718 0.77704 0.78761 1.19026 1.19675 1.20151 0.89915 0.87569 0.91268 0.81591 0.74393 0.75396 0.94246 0.92072 0.89775 0.90918 0.88664 0.89363 0.89163 0.90545 0.90929 0.92982 0.95798 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.78 10.11 71.24 0.72 -2.05 16 2 C 0.09 3.73 6.93 41.39 0.29 4.02 16 3 C -0.30 -12.47 9.52 22.11 0.21 -12.26 16 4 C 0.29 12.24 8.11 133.32 1.08 13.32 16 5 N -0.64 -20.16 5.45 -321.24 -1.75 -21.91 16 6 C 0.71 20.92 8.50 179.05 1.52 22.45 16 7 O -0.60 -21.48 13.13 -3.99 -0.05 -21.53 16 8 N -0.71 -14.38 4.09 -457.82 -1.87 -16.25 16 9 C 0.16 2.84 2.50 44.99 0.11 2.95 16 10 H 0.09 1.82 7.58 -2.39 -0.02 1.80 16 11 C -0.16 -2.89 9.36 71.98 0.67 -2.21 16 12 C 0.08 0.97 3.20 31.26 0.10 1.07 16 13 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 14 C -0.16 -1.60 6.50 32.06 0.21 -1.39 16 15 C -0.15 -1.11 7.02 31.86 0.22 -0.89 16 16 C 0.04 0.42 7.79 72.45 0.56 0.99 16 17 O -0.39 -5.69 9.97 -148.98 -1.48 -7.17 16 18 N -0.36 -17.33 12.59 -54.44 -0.69 -18.02 16 19 N -0.34 -17.02 3.59 -338.43 -1.22 -18.24 16 20 C 0.28 14.82 5.99 85.63 0.51 15.34 16 21 C -0.55 -31.46 9.39 25.60 0.24 -31.22 16 22 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 23 C 0.02 1.27 5.46 84.66 0.46 1.73 16 24 N -0.92 -52.27 13.29 21.45 0.28 -51.99 16 25 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 29 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 30 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.07 2.40 7.07 -2.39 -0.02 2.39 16 32 H 0.17 6.79 5.91 -2.91 -0.02 6.78 16 33 H 0.42 10.67 8.84 -92.71 -0.82 9.85 16 34 H 0.41 6.65 8.06 -92.71 -0.75 5.90 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.16 7.76 -2.38 -0.02 1.14 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 0.93 7.13 -2.39 -0.02 0.92 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.05 2.76 7.04 -2.39 -0.02 2.74 16 45 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -71.52 378.41 1.61 -69.91 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.56 Total: 27.81 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 6.92 Total: 11.84 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -5.24 Total: -126.41 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -1.54 Total: -28.70 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -71.52 1.61 -69.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271150389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.278 kcal (2) G-P(sol) polarization free energy of solvation -71.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds