Wall clock time and date at job start Tue Mar 31 2020 13:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35240 * 126.07322 * 2 1 4 4 C 1.40394 * 107.86901 * 180.15368 * 3 2 1 5 5 N 1.40198 * 125.97410 * 179.88405 * 4 3 2 6 6 C 1.34784 * 119.99707 * 359.71932 * 5 4 3 7 7 O 1.21592 * 119.99625 * 359.72505 * 6 5 4 8 8 N 1.34771 * 119.99547 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99515 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.54231 * 325.17176 * 9 8 6 11 11 C 1.54206 * 109.53839 * 204.99950 * 9 8 6 12 12 C 1.46290 * 111.98648 * 162.60649 * 11 9 8 13 13 C 1.54113 * 112.20136 * 61.41573 * 12 11 9 14 14 O 1.40321 * 108.70925 * 280.44025 * 13 12 11 15 15 C 1.43993 * 116.57921 * 95.03942 * 14 13 12 16 16 C 1.50620 * 109.53486 * 85.41841 * 9 8 6 17 17 N 1.31210 * 108.05513 * 359.62831 * 4 3 2 18 18 N 1.34967 * 126.06694 * 179.74645 * 2 1 3 19 19 C 1.46496 * 125.97874 * 359.95368 * 18 2 1 20 20 C 1.50692 * 109.47533 * 270.00461 * 19 18 2 21 21 H 1.08002 * 120.00092 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00083 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00094 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99852 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47465 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47092 * 119.99871 * 24 22 20 27 27 H 1.48503 * 109.47094 * 239.99512 * 24 22 20 28 28 H 1.08994 * 109.47316 * 270.25104 * 1 2 3 29 29 H 1.08998 * 109.47232 * 30.25882 * 1 2 3 30 30 H 1.09006 * 109.47194 * 150.25136 * 1 2 3 31 31 H 1.08007 * 126.06494 * 0.03284 * 3 2 1 32 32 H 0.96999 * 120.00248 * 179.71574 * 5 4 3 33 33 H 0.96999 * 120.00409 * 0.02562 * 8 6 5 34 34 H 1.08996 * 108.98210 * 283.25718 * 11 9 8 35 35 H 1.09004 * 108.97357 * 42.04998 * 11 9 8 36 36 H 1.08998 * 108.93242 * 182.12304 * 12 11 9 37 37 H 1.09001 * 108.93555 * 300.80750 * 12 11 9 38 38 H 1.09008 * 109.59604 * 40.20669 * 13 12 11 39 39 H 1.08998 * 109.59813 * 160.51537 * 13 12 11 40 40 H 1.09000 * 108.69146 * 78.91566 * 15 14 13 41 41 H 1.08999 * 108.69280 * 197.01284 * 15 14 13 42 42 H 1.09000 * 108.88831 * 330.96860 * 16 9 8 43 43 H 1.09003 * 108.88735 * 89.43411 * 16 9 8 44 44 H 1.09000 * 109.47248 * 30.00801 * 19 18 2 45 45 H 1.09007 * 109.46874 * 150.00352 * 19 18 2 46 46 H 0.96998 * 120.00020 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0036 5 7 4.7738 1.4750 -0.0070 6 6 4.6370 2.8159 -0.0128 7 8 3.5277 3.3138 -0.0201 8 7 5.7298 3.6047 -0.0157 9 6 5.5811 5.0621 -0.0225 10 1 4.7057 5.3365 -0.6111 11 6 6.8395 5.7060 -0.6387 12 6 6.6020 7.0903 -1.0480 13 6 6.2149 7.9909 0.1412 14 8 4.8578 7.7891 0.4356 15 6 4.5581 6.8325 1.4692 16 6 5.4161 5.5582 1.3900 17 7 3.6336 -0.6576 0.0024 18 7 2.3016 -1.0910 0.0048 19 6 1.8500 -2.4846 0.0120 20 6 1.6960 -2.9555 1.4351 21 1 1.9132 -2.2840 2.2526 22 6 1.2787 -4.2440 1.6935 23 7 1.0147 -5.0619 0.6981 24 14 1.0885 -4.8280 3.4577 25 1 1.4455 -3.7248 4.3856 26 1 -0.3190 -5.2383 3.6942 27 1 1.9881 -5.9852 3.6958 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3634 -0.8923 -0.5099 31 1 1.9721 2.1211 0.0005 32 1 5.6587 1.0778 -0.0052 33 1 6.6147 3.2074 -0.0139 34 1 7.6438 5.6868 0.0966 35 1 7.1431 5.1269 -1.5109 36 1 7.5081 7.4832 -1.5091 37 1 5.7957 7.1089 -1.7812 38 1 6.8201 7.7301 1.0095 39 1 6.3831 9.0353 -0.1213 40 1 4.7203 7.3034 2.4387 41 1 3.5083 6.5501 1.3900 42 1 4.9432 4.7771 1.9854 43 1 6.4007 5.7696 1.8071 44 1 0.8911 -2.5584 -0.5010 45 1 2.5844 -3.1071 -0.4993 46 1 0.7209 -5.9682 0.8799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272124655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:03 Heat of formation + Delta-G solvation = -0.156217 kcal Electronic energy + Delta-G solvation = -27128.303579 eV Core-core repulsion = 23247.787874 eV Total energy + Delta-G solvation = -3880.515706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85467 -40.15873 -39.09363 -36.10926 -34.70835 -33.65299 -33.31648 -31.97631 -31.18620 -30.63009 -27.12588 -26.57184 -26.30390 -25.55295 -23.11400 -21.84311 -21.39320 -20.68300 -19.80629 -19.53121 -17.72347 -17.15554 -17.03074 -16.66950 -16.07745 -15.64601 -15.30666 -15.23894 -14.72774 -14.48785 -14.28894 -14.22211 -13.96962 -13.67364 -13.37332 -12.99063 -12.78028 -12.46644 -12.25988 -12.15100 -11.94250 -11.65037 -11.60901 -11.37930 -11.20594 -11.06680 -11.03303 -10.83996 -10.78436 -10.40830 -10.24806 -9.99127 -9.83887 -9.63775 -9.50761 -9.22043 -8.63894 -7.89046 -7.38239 -6.24538 -4.31864 2.37074 2.66897 3.11581 3.20521 3.28399 3.34214 3.49865 3.64075 3.85560 4.19896 4.25428 4.34917 4.39341 4.58935 4.72025 4.79428 4.98579 5.09173 5.10701 5.14789 5.25915 5.38497 5.43670 5.56093 5.59206 5.72090 5.74924 5.79424 5.83093 5.92651 5.96087 6.14436 6.24256 6.33571 6.48662 6.62753 6.64840 6.96961 7.07490 7.08668 7.16371 7.54983 7.68668 7.90474 7.97011 8.09388 8.61366 8.69713 8.77831 9.34335 10.82683 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026366 B = 0.002286 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.724975 B =12244.054819 C =12271.611424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.644 5.644 6 C 0.712 3.288 7 O -0.563 6.563 8 N -0.742 5.742 9 C 0.169 3.831 10 H 0.098 0.902 11 C -0.125 4.125 12 C -0.149 4.149 13 C 0.064 3.936 14 O -0.384 6.384 15 C 0.068 3.932 16 C -0.166 4.166 17 N -0.325 5.325 18 N -0.319 5.319 19 C 0.259 3.741 20 C -0.534 4.534 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.405 0.595 33 H 0.395 0.605 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.393 22.973 -1.853 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.028 3.972 5 N -0.294 5.294 6 C 0.411 3.589 7 O -0.438 6.438 8 N -0.398 5.398 9 C 0.064 3.936 10 H 0.116 0.884 11 C -0.163 4.163 12 C -0.188 4.188 13 C -0.013 4.013 14 O -0.303 6.303 15 C -0.009 4.009 16 C -0.205 4.205 17 N -0.155 5.155 18 N -0.101 5.101 19 C 0.141 3.859 20 C -0.572 4.572 21 H 0.083 0.917 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.207 1.207 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.178 0.822 32 H 0.240 0.760 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.850 22.166 -1.998 24.759 hybrid contribution 0.755 -0.517 1.162 1.479 sum 11.605 21.649 -0.835 24.577 Atomic orbital electron populations 1.20327 0.87937 1.02794 1.03123 1.21060 0.94883 0.87176 1.00965 1.21229 0.89676 0.99808 1.21257 1.18663 0.86575 0.89252 1.02677 1.41413 1.07568 1.03751 1.76682 1.15645 0.84834 0.80373 0.77999 1.90877 1.23452 1.73417 1.56090 1.45166 1.07538 1.06202 1.80892 1.20496 0.99576 0.77479 0.96072 0.88379 1.20878 0.97024 0.96885 1.01531 1.21068 1.02770 0.95098 0.99814 1.22357 0.83471 0.99103 0.96366 1.87497 1.24651 1.60524 1.57592 1.22903 1.00274 0.87666 0.90038 1.22418 1.01038 0.98759 0.98300 1.77243 0.99950 1.08344 1.29979 1.48953 1.00898 1.07731 1.52524 1.19674 0.95945 0.71402 0.98892 1.21363 1.46529 0.97915 0.91413 0.91731 1.24932 0.94738 0.96077 0.98115 1.69927 1.45081 1.06943 1.31064 0.86308 0.77861 0.78762 0.83792 1.19599 1.20639 1.20689 0.90467 0.90825 0.90908 0.82222 0.76009 0.77104 0.91614 0.90934 0.90747 0.90594 0.93010 0.89804 0.92993 0.88761 0.89721 0.91736 0.92810 0.93066 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.01 0.36 -1.09 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -6.05 9.52 -39.84 -0.38 -6.43 16 4 C 0.28 5.81 8.11 -154.36 -1.25 4.56 16 5 N -0.64 -10.06 5.46 -15.51 -0.08 -10.15 16 6 C 0.71 10.45 8.34 -86.92 -0.73 9.72 16 7 O -0.56 -10.20 13.13 5.28 0.07 -10.13 16 8 N -0.74 -7.32 5.00 -59.22 -0.30 -7.62 16 9 C 0.17 1.54 2.15 -68.49 -0.15 1.40 16 10 H 0.10 1.17 7.26 -51.93 -0.38 0.79 16 11 C -0.13 -0.79 4.83 -29.29 -0.14 -0.93 16 12 C -0.15 -0.92 5.47 -29.34 -0.16 -1.08 16 13 C 0.06 0.43 6.38 37.74 0.24 0.67 16 14 O -0.38 -3.67 10.17 -33.68 -0.34 -4.01 16 15 C 0.07 0.60 6.67 37.59 0.25 0.85 16 16 C -0.17 -1.44 5.01 -27.49 -0.14 -1.57 16 17 N -0.32 -7.56 12.59 31.44 0.40 -7.17 16 18 N -0.32 -7.65 3.59 -58.33 -0.21 -7.86 16 19 C 0.26 6.69 5.99 -5.20 -0.03 6.66 16 20 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 21 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 24 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.27 7.07 -51.93 -0.37 0.90 16 31 H 0.16 3.29 5.91 -52.48 -0.31 2.98 16 32 H 0.41 5.03 8.84 -40.82 -0.36 4.67 16 33 H 0.40 2.72 8.62 -40.82 -0.35 2.37 16 34 H 0.07 0.33 7.60 -51.93 -0.39 -0.06 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 38 H 0.05 0.29 6.98 -51.92 -0.36 -0.07 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.08 0.89 7.83 -51.93 -0.41 0.49 16 43 H 0.06 0.45 6.84 -51.93 -0.35 0.09 16 44 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 45 H 0.05 1.41 8.14 -51.92 -0.42 0.99 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -33.30 371.79 -9.26 -42.56 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.00 Total: 6.35 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -3.11 Total: 0.67 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.54 Total: -57.22 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.27 Total: -14.14 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.30 -9.26 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272124655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.402 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds