Wall clock time and date at job start Tue Mar 31 2020 13:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35240 * 126.07322 * 2 1 4 4 C 1.40394 * 107.86901 * 180.15368 * 3 2 1 5 5 N 1.40198 * 125.97410 * 179.88405 * 4 3 2 6 6 C 1.34784 * 119.99707 * 359.71932 * 5 4 3 7 7 O 1.21592 * 119.99625 * 359.72505 * 6 5 4 8 8 N 1.34771 * 119.99547 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99515 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.54231 * 325.17176 * 9 8 6 11 11 C 1.54206 * 109.53839 * 204.99950 * 9 8 6 12 12 C 1.46290 * 111.98648 * 162.60649 * 11 9 8 13 13 C 1.54113 * 112.20136 * 61.41573 * 12 11 9 14 14 O 1.40321 * 108.70925 * 280.44025 * 13 12 11 15 15 C 1.43993 * 116.57921 * 95.03942 * 14 13 12 16 16 C 1.50620 * 109.53486 * 85.41841 * 9 8 6 17 17 N 1.31210 * 108.05513 * 359.62831 * 4 3 2 18 18 N 1.34967 * 126.06694 * 179.74645 * 2 1 3 19 19 C 1.46496 * 125.97874 * 359.95368 * 18 2 1 20 20 C 1.50692 * 109.47533 * 270.00461 * 19 18 2 21 21 H 1.08002 * 120.00092 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00083 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00094 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99852 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47465 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47092 * 119.99871 * 24 22 20 27 27 H 1.48503 * 109.47094 * 239.99512 * 24 22 20 28 28 H 1.08994 * 109.47316 * 270.25104 * 1 2 3 29 29 H 1.08998 * 109.47232 * 30.25882 * 1 2 3 30 30 H 1.09006 * 109.47194 * 150.25136 * 1 2 3 31 31 H 1.08007 * 126.06494 * 0.03284 * 3 2 1 32 32 H 0.96999 * 120.00248 * 179.71574 * 5 4 3 33 33 H 0.96999 * 120.00409 * 0.02562 * 8 6 5 34 34 H 1.08996 * 108.98210 * 283.25718 * 11 9 8 35 35 H 1.09004 * 108.97357 * 42.04998 * 11 9 8 36 36 H 1.08998 * 108.93242 * 182.12304 * 12 11 9 37 37 H 1.09001 * 108.93555 * 300.80750 * 12 11 9 38 38 H 1.09008 * 109.59604 * 40.20669 * 13 12 11 39 39 H 1.08998 * 109.59813 * 160.51537 * 13 12 11 40 40 H 1.09000 * 108.69146 * 78.91566 * 15 14 13 41 41 H 1.08999 * 108.69280 * 197.01284 * 15 14 13 42 42 H 1.09000 * 108.88831 * 330.96860 * 16 9 8 43 43 H 1.09003 * 108.88735 * 89.43411 * 16 9 8 44 44 H 1.09000 * 109.47248 * 30.00801 * 19 18 2 45 45 H 1.09007 * 109.46874 * 150.00352 * 19 18 2 46 46 H 0.96998 * 120.00020 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0036 5 7 4.7738 1.4750 -0.0070 6 6 4.6370 2.8159 -0.0128 7 8 3.5277 3.3138 -0.0201 8 7 5.7298 3.6047 -0.0157 9 6 5.5811 5.0621 -0.0225 10 1 4.7057 5.3365 -0.6111 11 6 6.8395 5.7060 -0.6387 12 6 6.6020 7.0903 -1.0480 13 6 6.2149 7.9909 0.1412 14 8 4.8578 7.7891 0.4356 15 6 4.5581 6.8325 1.4692 16 6 5.4161 5.5582 1.3900 17 7 3.6336 -0.6576 0.0024 18 7 2.3016 -1.0910 0.0048 19 6 1.8500 -2.4846 0.0120 20 6 1.6960 -2.9555 1.4351 21 1 1.9132 -2.2840 2.2526 22 6 1.2787 -4.2440 1.6935 23 7 1.0147 -5.0619 0.6981 24 14 1.0885 -4.8280 3.4577 25 1 1.4455 -3.7248 4.3856 26 1 -0.3190 -5.2383 3.6942 27 1 1.9881 -5.9852 3.6958 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3634 -0.8923 -0.5099 31 1 1.9721 2.1211 0.0005 32 1 5.6587 1.0778 -0.0052 33 1 6.6147 3.2074 -0.0139 34 1 7.6438 5.6868 0.0966 35 1 7.1431 5.1269 -1.5109 36 1 7.5081 7.4832 -1.5091 37 1 5.7957 7.1089 -1.7812 38 1 6.8201 7.7301 1.0095 39 1 6.3831 9.0353 -0.1213 40 1 4.7203 7.3034 2.4387 41 1 3.5083 6.5501 1.3900 42 1 4.9432 4.7771 1.9854 43 1 6.4007 5.7696 1.8071 44 1 0.8911 -2.5584 -0.5010 45 1 2.5844 -3.1071 -0.4993 46 1 0.7209 -5.9682 0.8799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272124655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:02 Heat of formation + Delta-G solvation = -22.846060 kcal Electronic energy + Delta-G solvation = -27129.287485 eV Core-core repulsion = 23247.787874 eV Total energy + Delta-G solvation = -3881.499611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.32907 -41.28417 -40.02915 -37.01129 -36.17178 -35.31611 -34.28780 -33.20485 -32.66862 -32.14376 -28.63305 -27.87599 -27.55324 -26.36878 -24.96097 -23.12783 -22.04228 -21.51010 -21.23148 -21.00952 -19.02197 -18.76018 -17.99552 -17.78485 -17.43009 -16.93448 -16.63795 -16.27958 -16.15283 -15.77810 -15.64834 -15.29787 -14.92186 -14.65967 -14.41883 -14.29380 -13.93896 -13.79980 -13.73986 -13.55903 -13.39596 -13.12311 -12.86009 -12.67546 -12.60508 -12.26809 -12.18452 -12.08245 -11.79067 -11.64163 -11.56566 -11.37439 -11.34114 -11.11849 -10.73496 -10.49315 -10.14600 -9.55961 -9.07568 -8.32403 -6.50083 1.02136 1.11213 1.36883 1.38486 1.51336 1.66971 2.07476 2.35190 2.39269 2.91688 2.96926 3.14186 3.58065 3.85086 3.86347 3.98811 4.09193 4.17336 4.21071 4.32025 4.44458 4.55825 4.61978 4.64482 4.72381 4.77547 4.81760 4.89999 4.90394 4.98602 5.02175 5.08289 5.10318 5.15054 5.18342 5.23119 5.27505 5.37459 5.54215 5.55102 5.81571 5.88722 5.98184 6.27563 6.50223 6.62080 6.76495 7.14012 7.20813 7.44170 8.73517 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026366 B = 0.002286 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.724975 B =12244.054819 C =12271.611424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.292 3.708 5 N -0.636 5.636 6 C 0.710 3.290 7 O -0.599 6.599 8 N -0.718 5.718 9 C 0.166 3.834 10 H 0.066 0.934 11 C -0.117 4.117 12 C -0.147 4.147 13 C 0.056 3.944 14 O -0.406 6.406 15 C 0.069 3.931 16 C -0.160 4.160 17 N -0.360 5.360 18 N -0.344 5.344 19 C 0.275 3.725 20 C -0.551 4.551 21 H 0.049 0.951 22 C 0.022 3.978 23 N -0.918 5.918 24 Si 0.972 3.028 25 H -0.274 1.274 26 H -0.267 1.267 27 H -0.274 1.274 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.165 0.835 32 H 0.421 0.579 33 H 0.414 0.586 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.024 0.976 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.908 24.325 -0.965 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.329 4.329 4 C 0.037 3.963 5 N -0.288 5.288 6 C 0.410 3.590 7 O -0.476 6.476 8 N -0.374 5.374 9 C 0.061 3.939 10 H 0.084 0.916 11 C -0.155 4.155 12 C -0.185 4.185 13 C -0.021 4.021 14 O -0.325 6.325 15 C -0.008 4.008 16 C -0.199 4.199 17 N -0.190 5.190 18 N -0.126 5.126 19 C 0.156 3.844 20 C -0.589 4.589 21 H 0.067 0.933 22 C -0.179 4.179 23 N -0.557 5.557 24 Si 0.796 3.204 25 H -0.199 1.199 26 H -0.192 1.192 27 H -0.199 1.199 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.182 0.818 32 H 0.258 0.742 33 H 0.251 0.749 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.429 23.551 -1.123 26.653 hybrid contribution 0.346 -0.782 0.828 1.191 sum 12.776 22.769 -0.295 26.110 Atomic orbital electron populations 1.20462 0.85407 1.04162 1.03927 1.21731 0.96633 0.86474 0.99534 1.21387 0.90014 0.99808 1.21647 1.18951 0.88101 0.88905 1.00352 1.41397 1.07022 1.03807 1.76537 1.15836 0.85453 0.80063 0.77692 1.90849 1.25298 1.73862 1.57615 1.45013 1.07138 1.06231 1.79005 1.20632 1.00192 0.76686 0.96366 0.91563 1.20854 0.95761 0.96654 1.02239 1.21064 1.03154 0.95037 0.99291 1.22598 0.82274 1.00062 0.97119 1.87474 1.26682 1.60545 1.57835 1.22851 0.99274 0.87958 0.90732 1.22354 1.02111 0.97940 0.97517 1.77163 1.00019 1.09715 1.32141 1.48760 1.01693 1.07471 1.54725 1.19242 0.94914 0.72428 0.97783 1.21455 1.47381 0.98327 0.91742 0.93320 1.25739 0.93987 0.95906 1.02275 1.70006 1.45174 1.07422 1.33051 0.85298 0.78477 0.78069 0.78556 1.19880 1.19197 1.19944 0.89821 0.87683 0.91242 0.81767 0.74155 0.74865 0.89201 0.90261 0.88323 0.92546 0.91442 0.88584 0.91413 0.90864 0.91810 0.89123 0.93023 0.95748 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.81 10.11 71.24 0.72 -2.09 16 2 C 0.09 3.75 6.92 41.39 0.29 4.04 16 3 C -0.30 -12.57 9.52 22.10 0.21 -12.36 16 4 C 0.29 12.13 8.11 133.31 1.08 13.21 16 5 N -0.64 -19.51 5.46 -321.23 -1.75 -21.26 16 6 C 0.71 20.43 8.34 179.05 1.49 21.92 16 7 O -0.60 -21.85 13.13 -4.00 -0.05 -21.90 16 8 N -0.72 -13.02 5.00 -459.54 -2.30 -15.32 16 9 C 0.17 2.81 2.15 44.63 0.10 2.91 16 10 H 0.07 1.60 7.26 -2.39 -0.02 1.58 16 11 C -0.12 -1.14 4.83 28.94 0.14 -1.00 16 12 C -0.15 -1.46 5.47 28.90 0.16 -1.30 16 13 C 0.06 0.62 6.38 72.36 0.46 1.08 16 14 O -0.41 -7.42 10.17 -143.45 -1.46 -8.88 16 15 C 0.07 1.17 6.67 72.26 0.48 1.65 16 16 C -0.16 -2.54 5.01 30.10 0.15 -2.39 16 17 N -0.36 -17.14 12.59 -54.44 -0.69 -17.83 16 18 N -0.34 -16.97 3.59 -338.46 -1.22 -18.19 16 19 C 0.28 14.74 5.99 85.63 0.51 15.25 16 20 C -0.55 -31.18 9.39 25.60 0.24 -30.94 16 21 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 22 C 0.02 1.20 5.46 84.66 0.46 1.66 16 23 N -0.92 -52.10 13.29 21.45 0.28 -51.82 16 24 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.07 2.43 7.07 -2.38 -0.02 2.41 16 31 H 0.17 6.81 5.91 -2.91 -0.02 6.79 16 32 H 0.42 9.99 8.84 -92.71 -0.82 9.17 16 33 H 0.41 4.58 8.62 -92.71 -0.80 3.78 16 34 H 0.09 0.50 7.60 -2.39 -0.02 0.49 16 35 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 37 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 38 H 0.07 0.53 6.98 -2.38 -0.02 0.52 16 39 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.30 7.83 -2.39 -0.02 1.28 16 43 H 0.09 0.96 6.84 -2.39 -0.02 0.95 16 44 H 0.05 2.74 7.04 -2.39 -0.02 2.72 16 45 H 0.02 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -73.81 371.79 0.74 -73.07 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.60 Total: 25.13 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 6.50 Total: 11.66 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -5.67 Total: -124.42 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.51 Total: -30.78 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -73.81 0.74 -73.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272124655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.223 kcal (2) G-P(sol) polarization free energy of solvation -73.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds