Wall clock time and date at job start Tue Mar 31 2020 13:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34958 * 125.52160 * 2 1 4 4 C 1.41212 * 108.24005 * 180.13941 * 3 2 1 5 5 N 1.32933 * 126.37871 * 179.82313 * 4 3 2 6 6 C 1.33834 * 119.99930 * 359.69298 * 5 4 3 7 7 O 1.21843 * 119.99686 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99948 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99726 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.57728 * 60.15729 * 9 8 6 11 11 C 1.53207 * 109.51938 * 180.32814 * 9 8 6 12 12 C 1.53178 * 109.03992 * 62.92061 * 11 9 8 13 13 C 1.53097 * 109.16320 * 56.98185 * 12 11 9 14 14 O 1.42898 * 109.41490 * 302.39102 * 13 12 11 15 15 C 1.42905 * 114.09851 * 61.15689 * 14 13 12 16 16 N 1.37422 * 107.24094 * 359.56654 * 4 3 2 17 17 H 0.96997 * 126.36052 * 180.29918 * 16 4 3 18 18 N 1.36446 * 125.52748 * 179.65128 * 2 1 3 19 19 C 1.46507 * 125.85082 * 0.02562 * 18 2 1 20 20 C 1.50697 * 109.47129 * 84.97475 * 19 18 2 21 21 H 1.08000 * 120.00489 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00042 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99483 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00140 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47456 * 89.99870 * 24 22 20 26 26 H 1.48502 * 109.47013 * 210.00174 * 24 22 20 27 27 H 1.48501 * 109.47373 * 329.99612 * 24 22 20 28 28 H 1.08998 * 109.46762 * 270.34433 * 1 2 3 29 29 H 1.08997 * 109.47255 * 30.34810 * 1 2 3 30 30 H 1.08997 * 109.46894 * 150.34763 * 1 2 3 31 31 H 1.08001 * 125.87923 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00545 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.46830 * 299.83748 * 10 9 8 34 34 H 1.08999 * 109.47412 * 59.83656 * 10 9 8 35 35 H 1.09000 * 109.47386 * 179.84020 * 10 9 8 36 36 H 1.09004 * 109.54239 * 303.05585 * 11 9 8 37 37 H 1.09000 * 109.61720 * 182.83144 * 11 9 8 38 38 H 1.09003 * 109.52669 * 297.07816 * 12 11 9 39 39 H 1.09005 * 109.57705 * 176.91879 * 12 11 9 40 40 H 1.08995 * 109.47859 * 182.40411 * 13 12 11 41 41 H 1.09000 * 109.48591 * 62.37596 * 13 12 11 42 42 H 1.09002 * 109.48053 * 58.82596 * 15 14 13 43 43 H 1.08999 * 109.48097 * 178.85162 * 15 14 13 44 44 H 1.09003 * 109.46918 * 204.97088 * 19 18 2 45 45 H 1.08995 * 109.46859 * 324.96993 * 19 18 2 46 46 H 0.96998 * 119.99580 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2912 1.0984 0.0000 4 6 3.6396 0.6789 -0.0033 5 7 4.7104 1.4667 -0.0076 6 6 4.5626 2.7968 -0.0154 7 8 3.4465 3.2857 -0.0190 8 7 5.6482 3.5954 -0.0203 9 6 5.4863 5.0514 -0.0283 10 6 4.7172 5.4886 1.2200 11 6 6.8649 5.7197 -0.0409 12 6 7.5942 5.3365 -1.3322 13 6 6.7385 5.7473 -2.5335 14 8 5.4599 5.1155 -2.4441 15 6 4.7123 5.4733 -1.2799 16 7 3.6386 -0.6953 0.0047 17 1 4.4194 -1.2709 0.0088 18 7 2.3000 -1.1104 0.0068 19 6 1.8322 -2.4988 0.0147 20 6 1.5543 -2.9433 -1.3982 21 1 1.7102 -2.2600 -2.2199 22 6 1.1011 -4.2225 -1.6419 23 7 0.9109 -5.0544 -0.6413 24 14 0.7561 -4.7733 -3.3931 25 1 1.9864 -5.3646 -3.9776 26 1 -0.3272 -5.7890 -3.3882 27 1 0.3345 -3.6041 -4.2058 28 1 -0.3633 0.0062 1.0277 29 1 -0.3633 0.8868 -0.5192 30 1 -0.3633 -0.8931 -0.5084 31 1 1.9467 2.1220 0.0004 32 1 6.5367 3.2063 -0.0178 33 1 3.7345 5.0172 1.2250 34 1 5.2690 5.1878 2.1107 35 1 4.6003 6.5723 1.2138 36 1 7.4427 5.3798 0.8187 37 1 6.7472 6.8024 0.0039 38 1 7.7571 4.2590 -1.3527 39 1 8.5542 5.8510 -1.3760 40 1 7.2329 5.4387 -3.4545 41 1 6.6097 6.8297 -2.5350 42 1 4.5571 6.5521 -1.2650 43 1 3.7470 4.9674 -1.2981 44 1 2.5988 -3.1380 0.4525 45 1 0.9185 -2.5709 0.6046 46 1 0.5924 -5.9545 -0.8128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348182754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:38 Heat of formation + Delta-G solvation = 17.782967 kcal Electronic energy + Delta-G solvation = -27794.410504 eV Core-core repulsion = 23914.672700 eV Total energy + Delta-G solvation = -3879.737804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.80916 -40.15923 -38.11695 -35.32685 -34.17055 -33.07437 -32.44659 -32.09718 -31.26464 -30.04770 -27.42984 -26.87609 -26.58572 -25.12216 -23.36227 -22.45927 -21.74898 -20.07950 -19.50856 -18.98512 -17.44049 -16.92450 -16.43912 -16.20718 -15.89308 -15.26582 -14.97698 -14.86364 -14.63926 -14.40080 -14.12144 -13.84850 -13.71747 -12.94145 -12.82170 -12.74110 -12.70848 -12.66829 -12.39489 -12.18017 -11.96356 -11.84813 -11.79204 -11.72951 -11.31172 -11.20153 -11.03455 -10.72064 -10.49454 -10.42501 -10.29226 -9.58394 -9.44228 -9.36309 -8.88963 -8.76469 -8.37963 -8.17817 -6.80131 -6.43565 -4.61693 1.85917 2.15383 3.07954 3.15851 3.19403 3.22856 3.63422 4.01734 4.09562 4.50428 4.57751 4.64222 4.75506 4.79995 4.84776 4.96623 5.12153 5.21576 5.34457 5.45788 5.51471 5.61276 5.64575 5.66537 5.77722 5.80920 5.86024 5.92148 5.98707 6.04865 6.16666 6.21599 6.27380 6.45484 6.49821 6.59841 6.65481 6.84601 7.17016 7.35484 7.42856 7.48166 7.56213 7.75451 7.96314 8.39470 8.50372 8.60133 9.08694 9.74668 10.55997 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002713 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.528958 B =10318.729426 C =10768.631876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.187 3.813 3 C -0.333 4.333 4 C 0.489 3.511 5 N -0.715 5.715 6 C 0.693 3.307 7 O -0.631 6.631 8 N -0.714 5.714 9 C 0.163 3.837 10 C -0.162 4.162 11 C -0.124 4.124 12 C -0.157 4.157 13 C 0.058 3.942 14 O -0.372 6.372 15 C 0.050 3.950 16 N -0.473 5.473 17 H 0.443 0.557 18 N -0.346 5.346 19 C 0.256 3.744 20 C -0.555 4.555 21 H 0.069 0.931 22 C 0.070 3.930 23 N -0.887 5.887 24 Si 0.908 3.092 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.269 1.269 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.183 0.817 32 H 0.394 0.606 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.120 0.880 44 H 0.049 0.951 45 H 0.066 0.934 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.211 16.425 2.337 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.061 3.939 3 C -0.365 4.365 4 C 0.236 3.764 5 N -0.479 5.479 6 C 0.392 3.608 7 O -0.515 6.515 8 N -0.368 5.368 9 C 0.075 3.925 10 C -0.220 4.220 11 C -0.161 4.161 12 C -0.194 4.194 13 C -0.020 4.020 14 O -0.290 6.290 15 C -0.028 4.028 16 N -0.196 5.196 17 H 0.290 0.710 18 N -0.133 5.133 19 C 0.139 3.861 20 C -0.593 4.593 21 H 0.087 0.913 22 C -0.135 4.135 23 N -0.524 5.524 24 Si 0.734 3.266 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.194 1.194 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.200 0.800 32 H 0.228 0.772 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.138 0.862 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.109 15.835 2.258 17.504 hybrid contribution 0.405 -0.533 -0.685 0.958 sum 7.514 15.302 1.573 17.120 Atomic orbital electron populations 1.20628 0.86656 1.04915 1.03448 1.21268 0.94364 0.85631 0.92609 1.22183 0.91109 1.00188 1.23067 1.18680 0.91082 0.81976 0.84639 1.68025 1.28731 1.04079 1.47105 1.16496 0.82937 0.84726 0.76599 1.90631 1.24512 1.78333 1.57993 1.44628 1.08289 1.03762 1.80111 1.20620 0.95052 0.80897 0.95898 1.22178 1.03016 1.00511 0.96322 1.21881 0.95287 1.00679 0.98296 1.22199 0.98999 1.02823 0.95414 1.22543 0.84970 0.96311 0.98133 1.88035 1.28802 1.69512 1.42660 1.23195 0.96729 0.98803 0.84060 1.44383 0.98821 1.04972 1.71417 0.71014 1.47812 0.92590 1.07989 1.64930 1.19971 0.96341 0.70408 0.99347 1.21414 1.47396 0.98681 0.91805 0.91271 1.24948 0.94323 0.95853 0.98356 1.69902 1.44228 1.07036 1.31254 0.86318 0.78324 0.78737 0.83196 1.20236 1.20711 1.19385 0.90010 0.89455 0.89146 0.80021 0.77211 0.89510 0.92731 0.92627 0.90916 0.90604 0.90720 0.91003 0.89302 0.93672 0.93494 0.86206 0.93272 0.91601 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.92 36.01 0.36 -1.07 16 2 C 0.19 3.43 6.92 -81.70 -0.57 2.86 16 3 C -0.33 -6.55 9.41 -39.62 -0.37 -6.93 16 4 C 0.49 9.95 8.07 -155.29 -1.25 8.69 16 5 N -0.72 -14.60 10.59 -15.79 -0.17 -14.77 16 6 C 0.69 13.59 7.89 -87.76 -0.69 12.90 16 7 O -0.63 -13.13 9.47 5.06 0.05 -13.08 16 8 N -0.71 -11.20 4.74 -52.47 -0.25 -11.45 16 9 C 0.16 2.12 0.68 -131.67 -0.09 2.03 16 10 C -0.16 -2.04 8.42 37.16 0.31 -1.73 16 11 C -0.12 -1.19 4.85 -26.53 -0.13 -1.32 16 12 C -0.16 -1.47 5.95 -26.59 -0.16 -1.63 16 13 C 0.06 0.61 6.84 37.21 0.25 0.87 16 14 O -0.37 -5.58 10.67 -35.23 -0.38 -5.96 16 15 C 0.05 0.70 5.40 37.20 0.20 0.91 16 16 N -0.47 -8.94 7.38 31.33 0.23 -8.71 16 17 H 0.44 7.41 8.96 -182.56 -1.64 5.77 16 18 N -0.35 -6.79 3.63 -58.04 -0.21 -7.00 16 19 C 0.26 5.49 5.71 -5.19 -0.03 5.46 16 20 C -0.55 -13.39 9.39 -34.44 -0.32 -13.71 16 21 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 22 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -22.69 13.29 55.43 0.74 -21.95 16 24 Si 0.91 19.47 29.54 -169.99 -5.02 14.45 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.41 7.80 -51.93 -0.40 1.01 16 31 H 0.18 3.70 5.77 -52.49 -0.30 3.40 16 32 H 0.39 5.73 7.63 -40.82 -0.31 5.42 16 33 H 0.09 1.35 6.19 -51.93 -0.32 1.03 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.79 7.11 -51.93 -0.37 0.42 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.12 2.07 6.11 -51.93 -0.32 1.75 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 1.42 7.88 -51.93 -0.41 1.01 16 46 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -29.38 368.68 -10.31 -39.68 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -8.27 Total: 14.27 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -2.59 Total: 8.97 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: 0.34 Total: -63.89 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.33 Total: -19.04 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.38 -10.31 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348182754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.468 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds