Wall clock time and date at job start Tue Mar 31 2020 13:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34958 * 125.52160 * 2 1 4 4 C 1.41212 * 108.24005 * 180.13941 * 3 2 1 5 5 N 1.32933 * 126.37871 * 179.82313 * 4 3 2 6 6 C 1.33834 * 119.99930 * 359.69298 * 5 4 3 7 7 O 1.21843 * 119.99686 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99948 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99726 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.57728 * 60.15729 * 9 8 6 11 11 C 1.53207 * 109.51938 * 180.32814 * 9 8 6 12 12 C 1.53178 * 109.03992 * 62.92061 * 11 9 8 13 13 C 1.53097 * 109.16320 * 56.98185 * 12 11 9 14 14 O 1.42898 * 109.41490 * 302.39102 * 13 12 11 15 15 C 1.42905 * 114.09851 * 61.15689 * 14 13 12 16 16 N 1.37422 * 107.24094 * 359.56654 * 4 3 2 17 17 H 0.96997 * 126.36052 * 180.29918 * 16 4 3 18 18 N 1.36446 * 125.52748 * 179.65128 * 2 1 3 19 19 C 1.46507 * 125.85082 * 0.02562 * 18 2 1 20 20 C 1.50697 * 109.47129 * 84.97475 * 19 18 2 21 21 H 1.08000 * 120.00489 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00042 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99483 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00140 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47456 * 89.99870 * 24 22 20 26 26 H 1.48502 * 109.47013 * 210.00174 * 24 22 20 27 27 H 1.48501 * 109.47373 * 329.99612 * 24 22 20 28 28 H 1.08998 * 109.46762 * 270.34433 * 1 2 3 29 29 H 1.08997 * 109.47255 * 30.34810 * 1 2 3 30 30 H 1.08997 * 109.46894 * 150.34763 * 1 2 3 31 31 H 1.08001 * 125.87923 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00545 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.46830 * 299.83748 * 10 9 8 34 34 H 1.08999 * 109.47412 * 59.83656 * 10 9 8 35 35 H 1.09000 * 109.47386 * 179.84020 * 10 9 8 36 36 H 1.09004 * 109.54239 * 303.05585 * 11 9 8 37 37 H 1.09000 * 109.61720 * 182.83144 * 11 9 8 38 38 H 1.09003 * 109.52669 * 297.07816 * 12 11 9 39 39 H 1.09005 * 109.57705 * 176.91879 * 12 11 9 40 40 H 1.08995 * 109.47859 * 182.40411 * 13 12 11 41 41 H 1.09000 * 109.48591 * 62.37596 * 13 12 11 42 42 H 1.09002 * 109.48053 * 58.82596 * 15 14 13 43 43 H 1.08999 * 109.48097 * 178.85162 * 15 14 13 44 44 H 1.09003 * 109.46918 * 204.97088 * 19 18 2 45 45 H 1.08995 * 109.46859 * 324.96993 * 19 18 2 46 46 H 0.96998 * 119.99580 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2912 1.0984 0.0000 4 6 3.6396 0.6789 -0.0033 5 7 4.7104 1.4667 -0.0076 6 6 4.5626 2.7968 -0.0154 7 8 3.4465 3.2857 -0.0190 8 7 5.6482 3.5954 -0.0203 9 6 5.4863 5.0514 -0.0283 10 6 4.7172 5.4886 1.2200 11 6 6.8649 5.7197 -0.0409 12 6 7.5942 5.3365 -1.3322 13 6 6.7385 5.7473 -2.5335 14 8 5.4599 5.1155 -2.4441 15 6 4.7123 5.4733 -1.2799 16 7 3.6386 -0.6953 0.0047 17 1 4.4194 -1.2709 0.0088 18 7 2.3000 -1.1104 0.0068 19 6 1.8322 -2.4988 0.0147 20 6 1.5543 -2.9433 -1.3982 21 1 1.7102 -2.2600 -2.2199 22 6 1.1011 -4.2225 -1.6419 23 7 0.9109 -5.0544 -0.6413 24 14 0.7561 -4.7733 -3.3931 25 1 1.9864 -5.3646 -3.9776 26 1 -0.3272 -5.7890 -3.3882 27 1 0.3345 -3.6041 -4.2058 28 1 -0.3633 0.0062 1.0277 29 1 -0.3633 0.8868 -0.5192 30 1 -0.3633 -0.8931 -0.5084 31 1 1.9467 2.1220 0.0004 32 1 6.5367 3.2063 -0.0178 33 1 3.7345 5.0172 1.2250 34 1 5.2690 5.1878 2.1107 35 1 4.6003 6.5723 1.2138 36 1 7.4427 5.3798 0.8187 37 1 6.7472 6.8024 0.0039 38 1 7.7571 4.2590 -1.3527 39 1 8.5542 5.8510 -1.3760 40 1 7.2329 5.4387 -3.4545 41 1 6.6097 6.8297 -2.5350 42 1 4.5571 6.5521 -1.2650 43 1 3.7470 4.9674 -1.2981 44 1 2.5988 -3.1380 0.4525 45 1 0.9185 -2.5709 0.6046 46 1 0.5924 -5.9545 -0.8128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348182754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:37 Heat of formation + Delta-G solvation = -1.947148 kcal Electronic energy + Delta-G solvation = -27795.266066 eV Core-core repulsion = 23914.672700 eV Total energy + Delta-G solvation = -3880.593366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32707 -41.29890 -39.42550 -36.54097 -35.79027 -34.71919 -33.64473 -33.35360 -32.64917 -31.48928 -28.77378 -28.32345 -27.81913 -26.06579 -25.04227 -23.73406 -22.89165 -21.42304 -20.94881 -20.18707 -19.01610 -18.65399 -17.80737 -17.40040 -16.90683 -16.67847 -16.48932 -16.34255 -15.90501 -15.70794 -15.37421 -15.11973 -14.85778 -14.40037 -14.28057 -14.19784 -13.82829 -13.69581 -13.64800 -13.52653 -13.28541 -13.14211 -12.94851 -12.78958 -12.76313 -12.73891 -12.29371 -12.09386 -11.97365 -11.64981 -11.36932 -11.03676 -10.91630 -10.76964 -10.55162 -10.25841 -9.72621 -9.63774 -8.52008 -8.16595 -6.55082 0.33494 0.62522 1.37672 1.41875 1.50862 1.69378 2.30028 2.38851 2.92866 3.00526 3.11654 3.24093 3.67184 3.73735 3.90822 3.93841 4.04052 4.25180 4.36648 4.38158 4.43365 4.51169 4.65792 4.75198 4.77814 4.80629 4.82997 4.85518 4.90751 4.93414 4.97821 4.99618 5.05183 5.14205 5.23639 5.29520 5.36775 5.44749 5.52544 5.72024 5.88634 6.05290 6.21064 6.37208 6.40073 6.62424 6.97493 7.14877 7.18678 8.25235 8.67348 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002713 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.528958 B =10318.729426 C =10768.631876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.194 3.806 3 C -0.346 4.346 4 C 0.474 3.526 5 N -0.727 5.727 6 C 0.678 3.322 7 O -0.648 6.648 8 N -0.705 5.705 9 C 0.156 3.844 10 C -0.156 4.156 11 C -0.116 4.116 12 C -0.152 4.152 13 C 0.049 3.951 14 O -0.406 6.406 15 C 0.052 3.948 16 N -0.471 5.471 17 H 0.450 0.550 18 N -0.353 5.353 19 C 0.270 3.730 20 C -0.562 4.562 21 H 0.056 0.944 22 C 0.032 3.968 23 N -0.912 5.912 24 Si 0.962 3.038 25 H -0.277 1.277 26 H -0.275 1.275 27 H -0.270 1.270 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.175 0.825 32 H 0.399 0.601 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 17.937 2.218 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.068 3.932 3 C -0.379 4.379 4 C 0.221 3.779 5 N -0.492 5.492 6 C 0.378 3.622 7 O -0.533 6.533 8 N -0.358 5.358 9 C 0.069 3.931 10 C -0.214 4.214 11 C -0.154 4.154 12 C -0.190 4.190 13 C -0.027 4.027 14 O -0.326 6.326 15 C -0.026 4.026 16 N -0.195 5.195 17 H 0.298 0.702 18 N -0.140 5.140 19 C 0.152 3.848 20 C -0.600 4.600 21 H 0.074 0.926 22 C -0.170 4.170 23 N -0.550 5.550 24 Si 0.787 3.213 25 H -0.203 1.203 26 H -0.200 1.200 27 H -0.195 1.195 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.192 0.808 32 H 0.234 0.766 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.959 17.379 2.143 19.235 hybrid contribution 0.188 -0.924 -0.664 1.154 sum 8.147 16.455 1.479 18.421 Atomic orbital electron populations 1.20789 0.83894 1.05384 1.05270 1.21819 0.95924 0.84621 0.90809 1.22099 0.91251 1.00191 1.24316 1.18904 0.91579 0.82430 0.84975 1.68082 1.28966 1.04692 1.47424 1.16808 0.83745 0.84797 0.76886 1.90621 1.25414 1.78546 1.58724 1.44684 1.07461 1.04865 1.78776 1.20907 0.97395 0.79338 0.95449 1.22100 1.00985 1.02050 0.96276 1.21888 0.92845 1.01758 0.98875 1.22183 1.00088 1.02122 0.94617 1.22817 0.83368 0.97380 0.99177 1.87978 1.30849 1.70720 1.43014 1.23050 0.95282 0.99693 0.84538 1.44356 0.98897 1.04702 1.71538 0.70189 1.47709 0.93070 1.07783 1.65460 1.19658 0.96058 0.71048 0.97990 1.21546 1.47246 0.98640 0.92594 0.92619 1.25573 0.94188 0.95939 1.01314 1.69962 1.44976 1.07380 1.32693 0.85483 0.78123 0.78248 0.79475 1.20312 1.20021 1.19486 0.87420 0.87390 0.90079 0.80821 0.76650 0.93013 0.92363 0.89739 0.89750 0.88050 0.92438 0.87931 0.88628 0.91532 0.90958 0.90240 0.94169 0.91395 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.67 9.92 71.24 0.71 -1.96 16 2 C 0.19 7.09 6.92 41.09 0.28 7.37 16 3 C -0.35 -13.90 9.41 22.25 0.21 -13.69 16 4 C 0.47 19.73 8.07 133.95 1.08 20.82 16 5 N -0.73 -30.42 10.59 -322.54 -3.42 -33.84 16 6 C 0.68 27.31 7.89 179.35 1.42 28.73 16 7 O -0.65 -28.03 9.47 -4.81 -0.05 -28.08 16 8 N -0.70 -22.11 4.74 -438.06 -2.08 -24.19 16 9 C 0.16 3.87 0.68 3.70 0.00 3.88 16 10 C -0.16 -3.76 8.42 71.98 0.61 -3.16 16 11 C -0.12 -1.87 4.85 30.72 0.15 -1.72 16 12 C -0.15 -2.43 5.95 30.69 0.18 -2.25 16 13 C 0.05 0.93 6.84 72.01 0.49 1.43 16 14 O -0.41 -12.01 10.67 -148.98 -1.59 -13.60 16 15 C 0.05 1.45 5.40 72.01 0.39 1.84 16 16 N -0.47 -18.10 7.38 -54.78 -0.40 -18.51 16 17 H 0.45 15.36 8.96 -213.29 -1.91 13.45 16 18 N -0.35 -13.92 3.63 -337.53 -1.23 -15.15 16 19 C 0.27 11.62 5.71 85.63 0.49 12.11 16 20 C -0.56 -27.12 9.39 25.60 0.24 -26.88 16 21 H 0.06 2.81 7.81 -2.91 -0.02 2.78 16 22 C 0.03 1.57 5.46 84.66 0.46 2.03 16 23 N -0.91 -46.36 13.29 21.45 0.28 -46.08 16 24 Si 0.96 39.53 29.54 68.60 2.03 41.56 16 25 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 28 H 0.11 2.47 8.14 -2.39 -0.02 2.46 16 29 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.08 2.46 7.80 -2.39 -0.02 2.44 16 31 H 0.17 7.30 5.77 -2.91 -0.02 7.29 16 32 H 0.40 11.50 7.63 -92.71 -0.71 10.79 16 33 H 0.05 1.63 6.19 -2.39 -0.01 1.62 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.12 7.11 -2.39 -0.02 1.11 16 39 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.08 2.87 6.11 -2.39 -0.01 2.85 16 44 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.07 2.92 7.88 -2.39 -0.02 2.90 16 46 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -64.45 368.68 -1.35 -65.79 By element: Atomic # 1 Polarization: 45.15 SS G_CDS: -1.61 Total: 43.54 kcal Atomic # 6 Polarization: 21.83 SS G_CDS: 6.71 Total: 28.55 kcal Atomic # 7 Polarization: -130.92 SS G_CDS: -6.84 Total: -137.76 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.64 Total: -41.68 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -64.45 -1.35 -65.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348182754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.844 kcal (2) G-P(sol) polarization free energy of solvation -64.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds