Wall clock time and date at job start Tue Mar 31 2020 14:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39872 * 125.90032 * 2 1 4 4 C 1.35322 * 107.91709 * 179.71584 * 3 2 1 5 5 C 1.50703 * 126.12402 * 180.26239 * 4 3 2 6 6 N 1.34943 * 107.74719 * 0.42696 * 4 3 2 7 7 C 1.46500 * 126.03722 * 179.83785 * 6 4 3 8 8 C 1.50706 * 109.47299 * 269.71516 * 7 6 4 9 9 O 1.21281 * 119.99702 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.97438 * 8 7 6 11 11 N 1.40105 * 119.99844 * 179.97438 * 10 8 7 12 12 C 1.34777 * 119.99873 * 179.73003 * 11 10 8 13 13 O 1.21274 * 120.00150 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99735 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.46973 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47298 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47298 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.46973 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00133 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00090 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99854 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00435 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46870 * 59.99843 * 22 20 18 24 24 H 1.48501 * 109.47363 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.46883 * 300.00033 * 22 20 18 26 26 N 1.30843 * 125.89737 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46606 * 269.99776 * 1 2 3 28 28 H 1.08997 * 109.47174 * 29.99564 * 1 2 3 29 29 H 1.08996 * 109.47118 * 149.99562 * 1 2 3 30 30 H 1.07990 * 126.03906 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.47189 * 270.19359 * 5 4 3 32 32 H 1.09000 * 109.46899 * 30.18982 * 5 4 3 33 33 H 1.09002 * 109.46855 * 150.19082 * 5 4 3 34 34 H 1.08995 * 109.47573 * 149.71391 * 7 6 4 35 35 H 1.09001 * 109.46878 * 29.71158 * 7 6 4 36 36 H 0.96996 * 119.99859 * 359.72574 * 10 8 7 37 37 H 0.97005 * 119.99938 * 359.72655 * 11 10 8 38 38 H 1.09000 * 109.47333 * 299.99429 * 14 12 11 39 39 H 1.09002 * 109.47152 * 59.99956 * 14 12 11 40 40 H 1.08996 * 109.47228 * 299.99628 * 15 14 12 41 41 H 1.09002 * 109.46857 * 60.00218 * 15 14 12 42 42 H 1.09001 * 109.46675 * 300.00507 * 16 15 14 43 43 H 1.09006 * 109.46802 * 59.99874 * 16 15 14 44 44 H 1.09000 * 109.46986 * 300.00195 * 17 16 15 45 45 H 1.09002 * 109.46857 * 60.00329 * 17 16 15 46 46 H 0.96999 * 120.00128 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7152 0.0064 5 6 4.8351 1.5988 0.0143 6 7 3.6088 -0.6342 0.0007 7 6 4.7899 -1.5009 0.0012 8 6 5.1957 -1.7979 -1.4195 9 8 4.5611 -1.3310 -2.3416 10 7 6.2644 -2.5813 -1.6653 11 7 6.6413 -2.8578 -2.9861 12 6 7.7133 -3.6368 -3.2319 13 8 8.3519 -4.0981 -2.3099 14 6 8.1190 -3.9337 -4.6525 15 6 9.3573 -4.8324 -4.6520 16 6 9.7689 -5.1344 -6.0944 17 6 11.0068 -6.0335 -6.0939 18 6 11.4125 -6.3304 -7.5145 19 1 10.8445 -5.9186 -8.3357 20 6 12.5088 -7.1278 -7.7661 21 7 13.2008 -7.6289 -6.7662 22 14 13.0123 -7.4953 -9.5271 23 1 13.3248 -6.2240 -10.2280 24 1 14.2129 -8.3691 -9.5266 25 1 11.8987 -8.1854 -10.2265 26 7 2.2742 -1.0599 0.0005 27 1 -0.3632 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 1.9924 2.1597 -0.0004 31 1 5.1330 1.8161 -1.0115 32 1 4.6058 2.5306 0.5312 33 1 5.6494 1.0886 0.5289 34 1 4.5561 -2.4334 0.5147 35 1 5.6091 -0.9983 0.5155 36 1 6.7747 -2.9508 -0.9278 37 1 6.1307 -2.4886 -3.7236 38 1 7.3018 -4.4410 -5.1654 39 1 8.3478 -3.0007 -5.1676 40 1 10.1744 -4.3248 -4.1394 41 1 9.1288 -5.7654 -4.1369 42 1 8.9516 -5.6420 -6.6067 43 1 9.9971 -4.2015 -6.6100 44 1 11.8241 -5.5262 -5.5815 45 1 10.7780 -6.9663 -5.5785 46 1 13.9718 -8.1901 -6.9432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805155708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:34 Heat of formation + Delta-G solvation = 14.273302 kcal Electronic energy + Delta-G solvation = -25470.906912 eV Core-core repulsion = 21591.016918 eV Total energy + Delta-G solvation = -3879.889995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77460 -40.59266 -39.26546 -35.82326 -34.93408 -34.57202 -32.83571 -32.57927 -31.84495 -30.21622 -29.37617 -27.43536 -26.53669 -25.49762 -22.72714 -22.02125 -21.00849 -20.68778 -20.05782 -19.60570 -18.31260 -18.06970 -16.92479 -16.44917 -16.31373 -16.15766 -15.67924 -15.40301 -14.59891 -14.46280 -14.43026 -14.22880 -14.07407 -14.04347 -13.69005 -13.37730 -12.98238 -12.78700 -12.68679 -12.62983 -12.41485 -12.22558 -11.78869 -11.68852 -11.59227 -11.00953 -10.85449 -10.84255 -10.60308 -10.58084 -10.47289 -10.22292 -9.66053 -9.43277 -9.28502 -9.03823 -8.84501 -8.73861 -8.32331 -5.97330 -4.00038 1.11526 1.64487 1.81071 2.06921 2.45590 2.46666 3.34245 3.38741 3.40922 3.51065 3.93915 4.09052 4.18244 4.36164 4.47352 4.50386 4.61664 4.68615 4.95965 5.02640 5.16023 5.22073 5.26169 5.29643 5.34212 5.38113 5.46192 5.54386 5.69126 5.84047 6.04312 6.16437 6.24363 6.26144 6.35599 6.46338 6.58894 6.76093 6.93869 7.12383 7.16499 7.38359 7.45490 7.70794 7.86001 8.02823 8.03979 8.45083 9.07300 9.63805 11.13876 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.037560 B = 0.001526 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.298141 B =18341.555280 C =18509.218467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.078 3.922 3 C -0.270 4.270 4 C 0.097 3.903 5 C -0.096 4.096 6 N -0.360 5.360 7 C 0.127 3.873 8 C 0.494 3.506 9 O -0.520 6.520 10 N -0.520 5.520 11 N -0.530 5.530 12 C 0.516 3.484 13 O -0.533 6.533 14 C -0.128 4.128 15 C -0.103 4.103 16 C -0.111 4.111 17 C 0.020 3.980 18 C -0.522 4.522 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 N -0.287 5.287 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.433 0.567 37 H 0.432 0.568 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.268 19.639 17.868 34.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.299 4.299 4 C -0.029 4.029 5 C -0.154 4.154 6 N -0.142 5.142 7 C -0.001 4.001 8 C 0.277 3.723 9 O -0.394 6.394 10 N -0.268 5.268 11 N -0.281 5.281 12 C 0.304 3.696 13 O -0.407 6.407 14 C -0.169 4.169 15 C -0.141 4.141 16 C -0.149 4.149 17 C -0.017 4.017 18 C -0.561 4.561 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 N -0.109 5.109 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.165 0.835 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.275 0.725 37 H 0.274 0.726 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.945 18.168 17.912 33.653 hybrid contribution 0.423 0.546 -1.008 1.222 sum -21.522 18.714 16.904 33.153 Atomic orbital electron populations 1.20184 0.86556 1.03439 1.02915 1.22344 0.96970 0.90754 0.98791 1.21102 0.90852 0.99796 1.18107 1.21079 0.97522 0.84146 1.00182 1.20507 0.92831 0.98315 1.03729 1.47741 1.04516 1.03620 1.58345 1.21207 0.86929 0.98099 0.93828 1.21091 0.79748 0.78997 0.92442 1.90808 1.52381 1.50924 1.45248 1.44734 1.30717 1.51705 0.99637 1.45325 1.31869 1.53618 0.97284 1.21583 0.77951 0.76610 0.93482 1.90731 1.52655 1.51025 1.46271 1.21797 1.01745 1.03205 0.90174 1.21496 0.94399 0.98587 0.99607 1.21665 1.00226 1.00241 0.92741 1.19090 0.91482 0.94258 0.96859 1.21243 1.11999 1.30235 0.92598 0.92770 1.25033 0.96508 0.95986 0.96956 1.69960 1.18885 1.33933 1.30659 0.86667 0.77941 0.78233 0.85189 1.20278 1.21304 1.20281 1.77362 0.85651 1.22551 1.25313 0.90498 0.90361 0.90878 0.83455 0.89874 0.89324 0.91206 0.85027 0.85390 0.72520 0.72619 0.88355 0.88364 0.91551 0.91552 0.93293 0.93297 0.96562 0.96552 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 36.01 0.38 -0.09 16 2 C 0.08 0.78 7.22 -82.40 -0.59 0.18 16 3 C -0.27 -2.38 10.65 -40.01 -0.43 -2.81 16 4 C 0.10 0.83 6.93 -82.26 -0.57 0.26 16 5 C -0.10 -0.48 10.12 36.01 0.36 -0.11 16 6 N -0.36 -3.46 3.10 -58.31 -0.18 -3.64 16 7 C 0.13 0.80 6.73 -5.19 -0.03 0.76 16 8 C 0.49 4.55 8.02 -10.98 -0.09 4.47 16 9 O -0.52 -6.95 16.27 5.56 0.09 -6.86 16 10 N -0.52 -4.57 6.26 31.22 0.20 -4.37 16 11 N -0.53 -5.43 6.26 31.22 0.20 -5.23 16 12 C 0.52 6.42 7.95 -10.99 -0.09 6.34 16 13 O -0.53 -8.40 15.82 5.56 0.09 -8.31 16 14 C -0.13 -1.53 5.70 -27.89 -0.16 -1.69 16 15 C -0.10 -1.71 4.50 -26.73 -0.12 -1.83 16 16 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 17 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 18 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 19 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 22 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 N -0.29 -3.38 12.58 33.67 0.42 -2.95 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.23 7.08 -51.93 -0.37 -0.13 16 34 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.13 0.31 7.04 -51.93 -0.37 -0.05 16 36 H 0.43 3.11 8.00 -182.60 -1.46 1.65 16 37 H 0.43 4.00 8.00 -182.59 -1.46 2.54 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 41 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 395.51 15.07 5.96 5.96 Total: -1.00 -38.70 395.51 -9.07 -47.78 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -9.53 Total: -2.49 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.03 Total: -10.12 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 1.37 Total: -42.66 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.18 Total: -15.17 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.70 -9.07 -47.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805155708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.049 kcal (2) G-P(sol) polarization free energy of solvation -38.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds