Wall clock time and date at job start Tue Mar 31 2020 14:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33890 * 120.00161 * 2 1 4 4 C 1.38682 * 119.99851 * 180.02562 * 2 1 3 5 5 C 1.47130 * 120.74025 * 184.23898 * 4 2 1 6 6 O 1.22301 * 120.63864 * 359.95830 * 5 4 2 7 7 C 1.40277 * 118.71930 * 179.97438 * 5 4 2 8 8 C 1.37325 * 120.17605 * 0.02562 * 7 5 4 9 9 C 1.50699 * 119.20000 * 180.02562 * 8 7 5 10 10 C 1.38866 * 121.59307 * 359.74180 * 8 7 5 11 11 C 1.37664 * 121.31331 * 0.52660 * 10 8 7 12 12 O 1.35486 * 120.15951 * 179.75844 * 11 10 8 13 13 C 1.42893 * 117.00134 * 3.49981 * 12 11 10 14 14 H 1.08999 * 109.47700 * 36.59202 * 13 12 11 15 15 C 1.50703 * 109.47037 * 276.59276 * 13 12 11 16 16 H 1.07998 * 120.00249 * 123.90143 * 15 13 12 17 17 C 1.37881 * 119.99840 * 303.90476 * 15 13 12 18 18 N 1.31509 * 119.99947 * 189.05229 * 17 15 13 19 19 Si 1.86804 * 120.00099 * 9.04975 * 17 15 13 20 20 H 1.48505 * 109.46877 * 93.51754 * 19 17 15 21 21 H 1.48497 * 109.47127 * 213.51746 * 19 17 15 22 22 H 1.48503 * 109.46826 * 333.51922 * 19 17 15 23 23 C 1.53005 * 109.47557 * 156.59516 * 13 12 11 24 24 N 1.46900 * 109.47193 * 194.65800 * 23 13 12 25 25 C 1.46894 * 109.47060 * 59.54307 * 24 23 13 26 26 C 1.46899 * 109.46765 * 179.54098 * 24 23 13 27 27 C 1.46897 * 109.47271 * 299.53976 * 24 23 13 28 28 H 1.09003 * 109.47352 * 238.59548 * 1 2 3 29 29 H 1.09004 * 109.47068 * 358.59534 * 1 2 3 30 30 H 1.09001 * 109.47420 * 118.59471 * 1 2 3 31 31 H 0.96698 * 117.00025 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.90826 * 180.02562 * 7 5 4 33 33 H 1.08995 * 109.47457 * 359.97438 * 9 8 7 34 34 H 1.09001 * 109.47056 * 120.00154 * 9 8 7 35 35 H 1.09000 * 109.46523 * 239.99335 * 9 8 7 36 36 H 1.07995 * 119.34213 * 180.28896 * 10 8 7 37 37 H 0.97005 * 120.00016 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.46651 * 314.66197 * 23 13 12 39 39 H 1.09000 * 109.46862 * 74.65652 * 23 13 12 40 40 H 1.09004 * 109.47568 * 57.24959 * 25 24 23 41 41 H 1.09002 * 109.47353 * 177.25069 * 25 24 23 42 42 H 1.09002 * 109.47226 * 297.24773 * 25 24 23 43 43 H 1.08997 * 109.47295 * 60.00116 * 26 24 23 44 44 H 1.09005 * 109.46837 * 179.97438 * 26 24 23 45 45 H 1.08998 * 109.47420 * 299.99806 * 26 24 23 46 46 H 1.09006 * 109.47063 * 71.23636 * 27 24 23 47 47 H 1.08995 * 109.47214 * 191.24049 * 27 24 23 48 48 H 1.09005 * 109.47362 * 311.23989 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1764 1.1595 0.0000 4 6 2.2003 -1.2010 -0.0005 5 6 3.6685 -1.2219 0.0929 6 8 4.3028 -0.1792 0.1720 7 6 4.3267 -2.4606 0.0893 8 6 3.6049 -3.6255 -0.0008 9 6 4.3345 -4.9441 -0.0022 10 6 2.2188 -3.6178 -0.0846 11 6 1.5090 -2.4384 -0.0918 12 8 0.1571 -2.4580 -0.1794 13 6 -0.4741 -3.7399 -0.1839 14 1 0.0637 -4.4122 0.4845 15 6 -0.4583 -4.3028 -1.5818 16 1 -0.0148 -5.2694 -1.7698 17 6 -1.0099 -3.5836 -2.6208 18 7 -1.1579 -4.1428 -3.8019 19 14 -1.5473 -1.8150 -2.3509 20 1 -0.4421 -0.8985 -2.7304 21 1 -2.7393 -1.5265 -3.1882 22 1 -1.8874 -1.6141 -0.9194 23 6 -1.9213 -3.5976 0.2921 24 7 -2.4604 -4.9234 0.6233 25 6 -1.6449 -5.5331 1.6820 26 6 -3.8462 -4.7855 1.0907 27 6 -2.4294 -5.7771 -0.5717 28 1 -0.3634 -0.5355 0.8771 29 1 -0.3633 1.0274 0.0252 30 1 -0.3634 -0.4918 -0.9023 31 1 1.6498 1.9705 0.0004 32 1 5.4038 -2.4983 0.1574 33 1 5.4071 -4.7661 0.0736 34 1 4.0043 -5.5429 0.8466 35 1 4.1195 -5.4772 -0.9283 36 1 1.6874 -4.5558 -0.1494 37 1 -1.5464 -3.6370 -4.5328 38 1 -1.9518 -2.9616 1.1767 39 1 -2.5215 -3.1486 -0.4992 40 1 -1.6281 -4.8762 2.5517 41 1 -2.0734 -6.4955 1.9620 42 1 -0.6280 -5.6803 1.3181 43 1 -4.4514 -4.3331 0.3051 44 1 -4.2465 -5.7693 1.3360 45 1 -3.8693 -4.1521 1.9774 46 1 -1.3976 -6.0430 -0.8016 47 1 -3.0055 -6.6835 -0.3858 48 1 -2.8621 -5.2382 -1.4147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229761663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:48 Heat of formation + Delta-G solvation = 52.133117 kcal Electronic energy + Delta-G solvation = -30014.137770 eV Core-core repulsion = 26155.366920 eV Total energy + Delta-G solvation = -3858.770849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.185 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.63452 -41.34582 -39.84389 -39.01938 -36.71735 -35.09140 -33.83556 -32.33019 -31.09842 -30.63613 -30.29852 -29.21598 -28.25510 -27.95232 -25.07597 -24.19715 -23.14604 -22.24104 -21.34522 -19.83606 -18.76603 -18.67507 -18.52337 -18.11790 -17.74525 -17.39241 -16.92956 -16.76173 -16.09867 -15.60813 -15.25774 -15.20850 -15.07011 -14.81744 -14.65915 -14.50607 -14.49685 -14.37076 -14.31390 -14.25189 -13.79912 -13.73505 -13.67750 -13.63556 -13.34854 -13.18844 -13.03615 -12.89784 -12.22213 -12.20067 -12.11351 -11.73889 -11.57328 -11.02695 -10.57070 -10.40950 -9.91878 -9.60082 -8.00013 -7.91574 -6.20001 -0.59742 0.03836 1.26756 1.49094 1.65594 1.78141 1.78841 1.99385 2.13713 2.17613 2.43252 2.57495 2.60912 2.96808 3.01257 3.12383 3.15494 3.30666 3.37414 3.40587 3.48551 3.53243 3.57148 3.71525 3.78916 3.80268 3.89510 4.05807 4.18850 4.23986 4.36564 4.44408 4.49618 4.60278 4.63482 4.72653 4.89467 4.95829 5.00052 5.12372 5.29973 5.34477 5.63421 5.83803 5.95272 6.13681 6.38039 6.40848 6.65046 6.95573 7.52787 7.59453 9.06936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.265 3.735 3 O -0.421 6.421 4 C -0.282 4.282 5 C 0.422 3.578 6 O -0.498 6.498 7 C -0.305 4.305 8 C 0.046 3.954 9 C -0.125 4.125 10 C -0.286 4.286 11 C 0.236 3.764 12 O -0.318 6.318 13 C 0.153 3.847 14 H 0.072 0.928 15 C -0.584 4.584 16 H 0.099 0.901 17 C 0.093 3.907 18 N -0.837 5.837 19 Si 0.878 3.122 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.251 1.251 23 C -0.006 4.006 24 N -0.256 5.256 25 C -0.050 4.050 26 C -0.040 4.040 27 C -0.036 4.036 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.410 0.590 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.283 0.717 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.113 0.887 46 H 0.149 0.851 47 H 0.094 0.906 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.577 -6.323 13.276 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.209 3.791 3 O -0.219 6.219 4 C -0.285 4.285 5 C 0.314 3.686 6 O -0.386 6.386 7 C -0.324 4.324 8 C 0.045 3.955 9 C -0.182 4.182 10 C -0.306 4.306 11 C 0.189 3.811 12 O -0.231 6.231 13 C 0.099 3.901 14 H 0.090 0.910 15 C -0.619 4.619 16 H 0.117 0.883 17 C -0.119 4.119 18 N -0.468 5.468 19 Si 0.709 3.291 20 H -0.193 1.193 21 H -0.217 1.217 22 H -0.178 1.178 23 C -0.127 4.127 24 N 0.085 4.915 25 C -0.191 4.191 26 C -0.182 4.182 27 C -0.176 4.176 28 H 0.126 0.874 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.265 0.735 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.151 0.849 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.146 0.854 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.131 0.869 46 H 0.166 0.834 47 H 0.112 0.888 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.987 -5.997 13.059 20.053 hybrid contribution -0.660 1.251 -0.334 1.453 sum -14.647 -4.746 12.725 19.975 Atomic orbital electron populations 1.22407 0.89841 1.04315 1.07120 1.23074 0.92018 0.85501 0.78500 1.84434 1.40191 1.14764 1.82537 1.19606 0.96582 0.88395 1.23883 1.17880 0.85825 0.89679 0.75261 1.90801 1.68217 1.36022 1.43574 1.22218 1.00473 0.92698 1.17002 1.19716 0.93006 0.95099 0.87668 1.20993 1.00251 0.94364 1.02587 1.20384 0.93781 0.96954 1.19456 1.18625 0.81655 0.92129 0.88691 1.86010 1.17316 1.34533 1.85227 1.20794 0.86321 0.82754 1.00241 0.91038 1.21124 1.43775 1.07539 0.89466 0.88335 1.25032 0.93965 0.97973 0.94964 1.69822 1.37552 1.37409 1.02021 0.87310 0.78958 0.85254 0.77593 1.19272 1.21694 1.17753 1.24417 1.01990 0.80894 1.05397 1.45736 1.13959 1.15907 1.15881 1.24157 1.00350 1.02768 0.91853 1.24057 0.80704 1.08182 1.05249 1.24578 1.11528 0.95282 0.86200 0.87370 0.90262 0.87097 0.73470 0.85620 0.91454 0.90991 0.90489 0.84876 0.90589 0.87263 0.85411 0.86910 0.86513 0.85707 0.86460 0.86391 0.86889 0.83352 0.88785 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.14 8.07 36.00 0.29 0.43 16 2 C 0.26 0.80 7.23 -34.15 -0.25 0.55 16 3 O -0.42 -1.10 11.49 -35.31 -0.41 -1.51 16 4 C -0.28 -1.67 5.90 -104.67 -0.62 -2.28 16 5 C 0.42 3.82 6.89 -35.21 -0.24 3.57 16 6 O -0.50 -6.05 16.06 -17.00 -0.27 -6.32 16 7 C -0.30 -2.20 9.58 -39.15 -0.38 -2.57 16 8 C 0.05 0.21 5.86 -104.72 -0.61 -0.40 16 9 C -0.13 -0.21 10.01 36.01 0.36 0.15 16 10 C -0.29 -1.03 8.31 -39.56 -0.33 -1.35 16 11 C 0.24 0.91 6.58 -38.34 -0.25 0.66 16 12 O -0.32 -0.28 3.21 -18.15 -0.06 -0.34 16 13 C 0.15 -0.37 1.55 -27.88 -0.04 -0.41 16 14 H 0.07 -0.33 3.82 -51.93 -0.20 -0.53 16 15 C -0.58 -1.45 5.27 -34.44 -0.18 -1.63 16 16 H 0.10 0.46 7.29 -52.49 -0.38 0.08 16 17 C 0.09 0.56 4.99 -17.82 -0.09 0.47 16 18 N -0.84 -8.16 13.96 55.43 0.77 -7.39 16 19 Si 0.88 3.89 21.54 -169.99 -3.66 0.23 16 20 H -0.27 -1.96 6.67 56.52 0.38 -1.59 16 21 H -0.29 -1.80 7.11 56.52 0.40 -1.40 16 22 H -0.25 0.12 4.22 56.52 0.24 0.36 16 23 C -0.01 0.04 2.91 -3.82 -0.01 0.03 16 24 N -0.26 3.03 0.05 -395.62 -0.02 3.01 16 25 C -0.05 0.67 7.63 60.06 0.46 1.13 16 26 C -0.04 0.59 7.99 60.06 0.48 1.07 16 27 C -0.04 0.33 6.81 60.06 0.41 0.74 16 28 H 0.11 -0.29 7.40 -51.93 -0.38 -0.68 16 29 H 0.08 -0.31 7.81 -51.93 -0.41 -0.72 16 30 H 0.11 0.17 2.08 -51.93 -0.11 0.06 16 31 H 0.41 -1.76 8.74 45.56 0.40 -1.37 16 32 H 0.13 0.85 7.88 -52.49 -0.41 0.44 16 33 H 0.07 0.11 7.81 -51.93 -0.41 -0.30 16 34 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 35 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.13 0.20 5.57 -52.49 -0.29 -0.09 16 37 H 0.28 2.80 8.31 -40.82 -0.34 2.46 16 38 H 0.11 -1.08 8.14 -51.93 -0.42 -1.50 16 39 H 0.13 -0.74 4.47 -51.93 -0.23 -0.97 16 40 H 0.11 -1.64 8.13 -51.93 -0.42 -2.06 16 41 H 0.12 -1.79 8.12 -51.93 -0.42 -2.21 16 42 H 0.12 -1.48 5.86 -51.93 -0.30 -1.78 16 43 H 0.12 -1.64 8.14 -51.93 -0.42 -2.06 16 44 H 0.12 -1.89 8.05 -51.93 -0.42 -2.31 16 45 H 0.11 -1.77 8.14 -51.93 -0.42 -2.20 16 46 H 0.15 -0.98 5.17 -51.93 -0.27 -1.25 16 47 H 0.09 -1.12 7.97 -51.93 -0.41 -1.53 16 48 H 0.12 -0.78 7.32 -51.93 -0.38 -1.16 16 LS Contribution 352.39 15.07 5.31 5.31 Total: 0.00 -24.09 352.39 -5.83 -29.92 By element: Atomic # 1 Polarization: -16.56 SS G_CDS: -6.49 Total: -23.05 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.00 Total: 0.14 kcal Atomic # 7 Polarization: -5.14 SS G_CDS: 0.75 Total: -4.38 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.74 Total: -8.17 kcal Atomic # 14 Polarization: 3.89 SS G_CDS: -3.66 Total: 0.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -24.09 -5.83 -29.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229761663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.051 kcal (2) G-P(sol) polarization free energy of solvation -24.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds