Wall clock time and date at job start Tue Mar 31 2020 13:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.24622 * 2 1 4 4 C 1.52726 * 109.25459 * 119.46581 * 2 1 3 5 5 C 1.53334 * 108.38389 * 69.25588 * 4 2 1 6 6 C 1.52741 * 108.36651 * 69.91937 * 5 4 2 7 7 H 1.08997 * 109.25636 * 69.14241 * 6 5 4 8 8 N 1.46499 * 109.25235 * 188.61696 * 6 5 4 9 9 C 1.38829 * 119.99562 * 204.99766 * 8 6 5 10 10 C 1.39795 * 119.58729 * 0.02562 * 9 8 6 11 11 C 1.38588 * 119.49266 * 179.97438 * 10 9 8 12 12 C 1.38395 * 118.68193 * 0.02562 * 11 10 9 13 13 C 1.40553 * 119.14557 * 359.97438 * 12 11 10 14 14 C 1.41322 * 119.78225 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99858 * 0.02562 * 14 13 12 16 16 C 1.40025 * 119.99659 * 180.02562 * 14 13 12 17 17 N 1.30738 * 120.00449 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99430 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47318 * 60.00259 * 18 16 14 20 20 H 1.48501 * 109.46775 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47022 * 299.99476 * 18 16 14 22 22 N 1.31955 * 119.58086 * 179.97438 * 9 8 6 23 23 C 1.50636 * 110.57861 * 308.89700 * 6 5 4 24 24 C 1.38902 * 117.74504 * 197.54946 * 23 6 5 25 25 C 1.37936 * 120.54815 * 180.22704 * 24 23 6 26 26 C 1.38262 * 119.76620 * 0.02723 * 25 24 23 27 27 C 1.37932 * 119.77654 * 359.87646 * 26 25 24 28 28 C 1.37664 * 122.56436 * 17.59906 * 23 6 5 29 29 H 1.08995 * 109.47174 * 300.53306 * 1 2 3 30 30 H 1.08997 * 109.47258 * 60.53623 * 1 2 3 31 31 H 1.09008 * 109.47136 * 180.53558 * 1 2 3 32 32 H 1.08998 * 109.46989 * 179.47015 * 3 2 1 33 33 H 1.08998 * 109.46976 * 299.46656 * 3 2 1 34 34 H 1.08997 * 109.47109 * 59.46527 * 3 2 1 35 35 H 1.09005 * 109.68132 * 309.53516 * 4 2 1 36 36 H 1.08999 * 109.68595 * 188.97721 * 4 2 1 37 37 H 1.08997 * 109.68498 * 310.20077 * 5 4 2 38 38 H 1.08997 * 109.68635 * 189.63872 * 5 4 2 39 39 H 0.96996 * 120.00610 * 25.00182 * 8 6 5 40 40 H 1.08003 * 120.25274 * 359.95879 * 10 9 8 41 41 H 1.08005 * 120.66233 * 179.97438 * 11 10 9 42 42 H 1.08000 * 120.42574 * 179.72632 * 12 11 10 43 43 H 0.96999 * 120.00157 * 180.02562 * 17 16 14 44 44 H 1.08004 * 119.73026 * 0.21487 * 24 23 6 45 45 H 1.07999 * 120.12102 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.11670 * 179.89614 * 26 25 24 47 47 H 1.08001 * 119.73098 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4445 0.0000 4 6 2.0336 -0.7092 1.2553 5 6 1.7065 -2.2022 1.1314 6 6 2.5976 -2.8016 0.0453 7 1 3.6300 -2.8159 0.3947 8 7 2.1630 -4.1724 -0.2341 9 6 3.0612 -5.0921 -0.7582 10 6 4.3784 -4.7009 -1.0155 11 6 5.2736 -5.6208 -1.5382 12 6 4.8317 -6.9076 -1.7915 13 6 3.4951 -7.2400 -1.5114 14 6 3.0295 -8.5499 -1.7654 15 1 3.7001 -9.2918 -2.1729 16 6 1.6986 -8.8857 -1.4885 17 7 0.8866 -7.9874 -0.9956 18 14 1.0834 -10.6174 -1.8236 19 1 1.8722 -11.5868 -1.0217 20 1 -0.3502 -10.7146 -1.4484 21 1 1.2386 -10.9271 -3.2676 22 7 2.6611 -6.3248 -1.0062 23 6 2.5131 -1.9863 -1.2186 24 6 2.9492 -2.5755 -2.3985 25 6 2.9021 -1.8797 -3.5886 26 6 2.4175 -0.5850 -3.6081 27 6 1.9821 0.0012 -2.4379 28 6 2.0266 -0.6987 -1.2386 29 1 -0.3633 0.5221 0.8851 30 1 -0.3633 0.5055 -0.8947 31 1 -0.3634 -1.0277 0.0096 32 1 3.1243 1.4488 0.0095 33 1 1.6768 1.9542 -0.8947 34 1 1.6612 1.9596 0.8851 35 1 1.5379 -0.2965 2.1340 36 1 3.1117 -0.5759 1.3449 37 1 0.6590 -2.3270 0.8572 38 1 1.8998 -2.7005 2.0813 39 1 1.2477 -4.4375 -0.0530 40 1 4.6960 -3.6896 -0.8087 41 1 6.2956 -5.3388 -1.7446 42 1 5.5043 -7.6458 -2.2028 43 1 -0.0353 -8.2202 -0.8036 44 1 3.3285 -3.5866 -2.3839 45 1 3.2434 -2.3444 -4.5018 46 1 2.3797 -0.0344 -4.5364 47 1 1.6034 1.0125 -2.4540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255096700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:01 Heat of formation + Delta-G solvation = 57.270757 kcal Electronic energy + Delta-G solvation = -27466.769315 eV Core-core repulsion = 23999.593093 eV Total energy + Delta-G solvation = -3467.176222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.54941 -38.25998 -36.66038 -35.65751 -33.44185 -31.78101 -30.38425 -29.97536 -29.67753 -28.51281 -27.34835 -25.50973 -25.11699 -22.79590 -22.59812 -21.58220 -20.88283 -19.94933 -18.56948 -17.39228 -16.39610 -16.31833 -15.43818 -15.29279 -14.80136 -14.73309 -14.45689 -14.12218 -13.78121 -13.57426 -13.45432 -13.34358 -12.87144 -12.61821 -12.50137 -12.16645 -11.97237 -11.92794 -11.83829 -11.69553 -11.63198 -11.20366 -11.16938 -11.05104 -10.99640 -10.68287 -10.58673 -10.38097 -10.18651 -10.12616 -9.92302 -9.47124 -8.90886 -8.39804 -8.32265 -7.90130 -7.50816 -6.50420 -6.32750 -4.47272 1.64971 1.74747 2.88168 3.10570 3.13168 3.22978 3.29333 3.97951 3.99372 4.27128 4.58612 4.68556 4.82733 4.89595 5.05012 5.12058 5.25332 5.28937 5.47144 5.48718 5.52421 5.57248 5.64280 5.73645 5.78970 5.84072 5.91234 5.96242 5.99390 6.05348 6.10635 6.15259 6.17685 6.26649 6.36385 6.42805 6.46087 6.61515 6.79545 6.82463 6.89277 6.93988 6.95848 7.06801 7.24924 7.38657 7.59641 7.81116 7.92304 8.16322 8.36256 8.68855 8.79827 9.11721 10.24305 10.40025 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.003595 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.980794 B = 7787.491546 C = 8181.987821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 C -0.140 4.140 4 C -0.105 4.105 5 C -0.126 4.126 6 C 0.205 3.795 7 H 0.085 0.915 8 N -0.730 5.730 9 C 0.414 3.586 10 C -0.371 4.371 11 C -0.031 4.031 12 C -0.317 4.317 13 C 0.293 3.707 14 C -0.434 4.434 15 H 0.082 0.918 16 C 0.072 3.928 17 N -0.714 5.714 18 Si 0.904 3.096 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.266 1.266 22 N -0.530 5.530 23 C -0.089 4.089 24 C -0.103 4.103 25 C -0.130 4.130 26 C -0.125 4.125 27 C -0.132 4.132 28 C -0.065 4.065 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.396 0.604 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.270 0.730 44 H 0.151 0.849 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 15.644 2.051 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 C -0.197 4.197 4 C -0.143 4.143 5 C -0.164 4.164 6 C 0.098 3.902 7 H 0.102 0.898 8 N -0.365 5.365 9 C 0.174 3.826 10 C -0.397 4.397 11 C -0.056 4.056 12 C -0.340 4.340 13 C 0.166 3.834 14 C -0.466 4.466 15 H 0.100 0.900 16 C -0.153 4.153 17 N -0.335 5.335 18 Si 0.729 3.271 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.190 1.190 22 N -0.252 5.252 23 C -0.090 4.090 24 C -0.121 4.121 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.150 4.150 28 C -0.066 4.066 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.231 0.769 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.168 0.832 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.227 15.544 2.306 15.872 hybrid contribution 0.295 -0.587 -0.518 0.837 sum -1.932 14.957 1.788 15.187 Atomic orbital electron populations 1.21939 0.93866 1.02304 1.01460 1.19403 0.95593 0.94710 0.92646 1.21955 1.01248 0.94878 1.01603 1.21596 1.01395 0.94600 0.96677 1.21847 1.00437 0.95386 0.98733 1.19434 0.98980 0.81242 0.90576 0.89761 1.44250 1.12766 1.07424 1.72019 1.18520 0.86405 0.88841 0.88851 1.20639 0.94972 1.00080 1.24027 1.20594 0.96620 0.93301 0.95047 1.21528 0.98275 0.96766 1.17444 1.18185 0.86840 0.91827 0.86518 1.19563 0.95386 0.95216 1.36393 0.89959 1.26036 0.97023 0.98518 0.93762 1.70133 1.04600 1.33184 1.25625 0.86448 0.78093 0.82726 0.79858 1.19008 1.20352 1.19020 1.68238 1.35553 0.98676 1.22700 1.20268 0.98856 0.93521 0.96394 1.22104 0.96557 1.01855 0.91571 1.21128 1.00687 0.94767 0.98237 1.21006 1.00029 0.95614 0.97663 1.21023 1.02020 0.99577 0.92371 1.19435 0.99252 0.93616 0.94276 0.92537 0.92702 0.92099 0.92485 0.92406 0.92566 0.91253 0.91414 0.90905 0.90889 0.76877 0.88884 0.88980 0.88775 0.91871 0.83200 0.86646 0.86883 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.18 37.16 0.30 -1.12 16 2 C -0.02 -0.26 0.63 -155.83 -0.10 -0.36 16 3 C -0.14 -1.29 7.98 37.16 0.30 -0.99 16 4 C -0.10 -1.12 4.69 -26.70 -0.13 -1.25 16 5 C -0.13 -1.62 5.38 -26.69 -0.14 -1.76 16 6 C 0.20 3.31 2.37 -69.25 -0.16 3.14 16 7 H 0.08 1.43 6.45 -51.93 -0.34 1.09 16 8 N -0.73 -14.49 4.99 -55.19 -0.28 -14.77 16 9 C 0.41 9.83 6.44 -155.32 -1.00 8.83 16 10 C -0.37 -8.33 6.82 -38.87 -0.27 -8.59 16 11 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 12 C -0.32 -7.95 9.83 -38.65 -0.38 -8.33 16 13 C 0.29 8.08 6.55 -85.00 -0.56 7.52 16 14 C -0.43 -11.71 9.14 -37.74 -0.34 -12.06 16 15 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 16 C 0.07 1.84 5.50 -17.35 -0.10 1.74 16 17 N -0.71 -18.91 11.46 55.55 0.64 -18.27 16 18 Si 0.90 18.74 29.56 -169.99 -5.02 13.72 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 N -0.53 -14.41 7.89 -10.32 -0.08 -14.49 16 23 C -0.09 -1.44 5.52 -104.62 -0.58 -2.02 16 24 C -0.10 -1.87 8.46 -39.45 -0.33 -2.20 16 25 C -0.13 -2.09 10.05 -39.68 -0.40 -2.49 16 26 C -0.12 -1.73 10.05 -39.68 -0.40 -2.13 16 27 C -0.13 -1.74 8.88 -39.44 -0.35 -2.09 16 28 C -0.07 -0.90 4.70 -104.61 -0.49 -1.39 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.55 8.04 -51.93 -0.42 0.13 16 31 H 0.06 0.70 6.43 -51.92 -0.33 0.36 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.50 6.36 -51.93 -0.33 0.17 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 36 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.07 0.94 6.26 -51.93 -0.32 0.62 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.40 7.99 8.71 -40.82 -0.36 7.63 16 40 H 0.09 1.92 5.69 -52.48 -0.30 1.62 16 41 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 42 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 43 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 44 H 0.15 3.16 3.85 -52.48 -0.20 2.95 16 45 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 46 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.11 1.25 6.32 -52.49 -0.33 0.91 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -28.89 361.79 -11.52 -40.41 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -6.70 Total: 14.60 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -5.52 Total: -26.65 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.28 Total: -47.53 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.89 -11.52 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.678 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds